Rh1CG031600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000253
Physical Location & Seq
Reverse (-)
6233450 .. 6252806
19357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG031600.1

Sequence Viewer

Length: 960 bp
ATGAAAGATCAAGCCATAAAGACTTGTCGCTCTATATTTCCAGCTTGCACCCTTGAGAAAGTTAATAATGAAGAGGATGGGGATTCCTTCACTCACCAAGAGAACTTTTATCCTGTTCTTTATAAAATGTTGAAAGACAAACAAGACTGGGGAGTTCATCACTACTTTCAAGGTCGTGCTACCTTTGAGCCTGGAGTGATGGAATTGACAGAATCAATATTAGATCATTTCAAGTGGAAACTGGACCAAGCAGGAATATATGGTGCTGTCGGTGTCTCTCGCTTCCCCTATCATTTTTGTGGGAACACATGGAGAGCATTCTGTGAACTCTGGAGTCCTTTGACTAATACTTTACACCATGGGAATGGAAAGATGAGTGTGTCCCTGTATGACTTAAGGCTTATTGGTTGCTTACCCATCCTGGGCGTCCCATATGAAGAATTCATTCCTGCGAATAAAGAATTACATAGTAATGGGAGATATCCGTATACCATTGTTGAGCTTCTGCGAATACATTCTGAATTGAGTGCACCCAATAGCAAGACTTATGTTTCCTGGAGGCAATGGCTTGCTCATTTTTATCGGGGACGCTTCGTATACGTAGCCTATGGAGAGACTATATACCGGGGAGATCAAATGCAACAAAATATGTTTATGGGTAGGAAACCAGCTCTGGACATTTCAAAAGAAGGAGAACTTGCTGCTTTTCTAGCATTTTGGCTCAGCAGGTTTGTTTTGCCTTCTCATGACCATAGAATCAGACCTGAAACCTTTTATATGGCAGGCTTAATGGCCCAGGGGGTCAGGGTCCCTCTTGCACCGTCAGTTTTAGGCTATATTTATCATGGCCTTGGTGAGTTTGTGACTGATCCGAGAGGGCCTAAAGAGTCTCAAAGTTGTCTGCCTGTTCATTACATGATCGGTTGGTTAATTAAGAGAGCACTTTACTTGTTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

319

Amino Acids

36.91

Weight (kDa)

8.13

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 85 - 290 1e-17 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
Acc36I ACCTGC 1 cut(s) 717
AccI GTMKAC 2 cut(s) 488, 597
AclWI GGATC 1 cut(s) 863
AcsI RAATTY 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 422
AflII CTTAAG 1 cut(s) 394
AgsI TTSAA 4 cut(s) 133, 170, 232, 684
AjnI CCWGG 4 cut(s) 190, 420, 554, 795
AluBI AGCT 3 cut(s) 44, 502, 671
AluI AGCT 3 cut(s) 44, 502, 671
Alw21I GWGCWC 2 cut(s) 532, 943
Alw26I GTCTC 3 cut(s) 280, 608, 894
Alw44I GTGCAC 1 cut(s) 528
AlwI GGATC 1 cut(s) 863
AoxI GGCC 3 cut(s) 792, 847, 878
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 1 cut(s) 440
Asp700I GAANNNNTTC 2 cut(s) 444, 514
AspS9I GGNCC 4 cut(s) 244, 793, 808, 878
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 2 cut(s) 86, 866
AvaII GGWCC 2 cut(s) 244, 808
BaeGI GKGCMC 1 cut(s) 532
Bbv12I GWGCWC 2 cut(s) 532, 943
BbvI GCAGC 1 cut(s) 688
BccI CCATC 3 cut(s) 71, 193, 425
BciT130I CCWGG 4 cut(s) 192, 422, 556, 797
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 3 cut(s) 280, 608, 894
BfaI CTAG 1 cut(s) 710
BfrI CTTAAG 1 cut(s) 394
BfuAI ACCTGC 1 cut(s) 717
BisI GCNGC 1 cut(s) 702
BlpI GCTNAGC 1 cut(s) 722
BlsI GCNGC 1 cut(s) 703
Bme1390I CCNGG 5 cut(s) 192, 422, 556, 626, 797
Bme18I GGWCC 2 cut(s) 244, 808
BmgT120I GGNCC 4 cut(s) 244, 793, 808, 878
BmiI GGNNCC 2 cut(s) 809, 810
BmrFI CCNGG 5 cut(s) 192, 422, 556, 626, 797
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpmI CTGGAG 3 cut(s) 213, 352, 577
Bpu1102I GCTNAGC 1 cut(s) 722
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 626
BsaAI YACGTR 1 cut(s) 601
BsaHI GRCGYC 1 cut(s) 426
BsaJI CCNNGG 6 cut(s) 358, 421, 625, 795, 796, 850
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 152, 246
Bse3DI GCAATG 1 cut(s) 569
BseBI CCWGG 4 cut(s) 192, 422, 556, 797
BseDI CCNNGG 6 cut(s) 358, 421, 625, 795, 796, 850
BseGI GGATG 2 cut(s) 82, 417
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 1 cut(s) 736
BseNI ACTGG 2 cut(s) 152, 246
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 1 cut(s) 688
BshFI GGCC 3 cut(s) 794, 849, 880
BsiHKAI GWGCWC 2 cut(s) 532, 943
BsiSI CCGG 1 cut(s) 625
BslFI GGGAC 4 cut(s) 367, 413, 600, 794
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 3 cut(s) 280, 608, 894
BsmFI GGGAC 4 cut(s) 367, 413, 600, 794
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 3 cut(s) 794, 849, 880
Bsp1286I GDGCHC 2 cut(s) 532, 943
Bsp143I GATC 5 cut(s) 7, 223, 631, 868, 918
Bsp1720I GCTNAGC 1 cut(s) 722
Bsp19I CCATGG 1 cut(s) 358
BspANI GGCC 3 cut(s) 794, 849, 880
BspCNI CTCAG 1 cut(s) 735
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 809, 810
BspMI ACCTGC 1 cut(s) 717
BspPI GGATC 1 cut(s) 863
BspTI CTTAAG 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 569
BsrI ACTGG 2 cut(s) 152, 246
BssECI CCNNGG 6 cut(s) 358, 421, 625, 795, 796, 850
BssMI GATC 5 cut(s) 7, 223, 631, 868, 918
BssNAI GTATAC 2 cut(s) 489, 598
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 2 cut(s) 358, 850
Bst1107I GTATAC 2 cut(s) 489, 598
Bst2UI CCWGG 4 cut(s) 192, 422, 556, 797
Bst4CI ACNGT 1 cut(s) 822
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 426
BstAFI CTTAAG 1 cut(s) 394
BstBAI YACGTR 1 cut(s) 601
BstC8I GCNNGC 3 cut(s) 46, 570, 784
BstDEI CTNAG 1 cut(s) 722
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 2 cut(s) 82, 417
BstKTI GATC 5 cut(s) 10, 226, 634, 871, 921
BstMAI GTCTC 3 cut(s) 280, 608, 894
BstMBI GATC 5 cut(s) 7, 223, 631, 868, 918
BstMWI GCNNNNNNNGC 1 cut(s) 710
BstNI CCWGG 4 cut(s) 192, 422, 556, 797
BstSCI CCNGG 5 cut(s) 190, 420, 554, 624, 795
BstSLI GKGCMC 1 cut(s) 532
BstSNI TACGTA 1 cut(s) 601
BstV1I GCAGC 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 365
BstZ17I GTATAC 2 cut(s) 489, 598
BsuRI GGCC 3 cut(s) 794, 849, 880
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 2 cut(s) 82, 417
BveI ACCTGC 1 cut(s) 717
Cac8I GCNNGC 3 cut(s) 46, 570, 784
CciI TCATGA 1 cut(s) 745
Cfr13I GGNCC 4 cut(s) 244, 793, 808, 878
CseI GACGC 2 cut(s) 415, 597
CviAII CATG 5 cut(s) 309, 359, 746, 845, 916
DdeI CTNAG 1 cut(s) 722
DpnI GATC 5 cut(s) 9, 225, 633, 870, 920
DpnII GATC 5 cut(s) 7, 223, 631, 868, 918
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco105I TACGTA 1 cut(s) 601
Eco130I CCWWGG 2 cut(s) 358, 850
Eco32I GATATC 1 cut(s) 482
Eco47I GGWCC 2 cut(s) 244, 808
EcoO109I RGGNCCY 2 cut(s) 808, 878
EcoRI GAATTC 1 cut(s) 440
EcoRII CCWGG 4 cut(s) 190, 420, 554, 795
EcoRV GATATC 1 cut(s) 482
EcoT14I CCWWGG 2 cut(s) 358, 850
ErhI CCWWGG 2 cut(s) 358, 850
FaeI CATG 5 cut(s) 312, 362, 749, 848, 919
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FaqI GGGAC 4 cut(s) 367, 413, 600, 794
FatI CATG 5 cut(s) 308, 358, 745, 844, 915
FauNDI CATATG 1 cut(s) 433
FblI GTMKAC 2 cut(s) 488, 597
Fnu4HI GCNGC 1 cut(s) 702
FokI GGATG 2 cut(s) 89, 404
Fsp4HI GCNGC 1 cut(s) 702
FspBI CTAG 1 cut(s) 710
GluI GCNGC 1 cut(s) 702
GsuI CTGGAG 3 cut(s) 213, 352, 577
HaeIII GGCC 3 cut(s) 794, 849, 880
HapII CCGG 1 cut(s) 625
HgaI GACGC 2 cut(s) 415, 597
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 5 cut(s) 312, 362, 749, 848, 919
HinfI GANTC 5 cut(s) 83, 212, 334, 756, 887
HpaII CCGG 1 cut(s) 625
HphI GGTGA 2 cut(s) 86, 866
Hpy166II GTNNAC 4 cut(s) 326, 489, 530, 598
Hpy188I TCNGA 3 cut(s) 520, 761, 873
Hpy188III TCNNGA 3 cut(s) 331, 674, 746
Hpy8I GTNNAC 4 cut(s) 326, 489, 530, 598
HpyAV CCTTC 3 cut(s) 97, 683, 750
HpyCH4III ACNGT 1 cut(s) 822
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 4 cut(s) 48, 530, 640, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 710
HpyF3I CTNAG 1 cut(s) 722
HpySE526I ACGT 1 cut(s) 600
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 5 cut(s) 312, 362, 749, 848, 919
KflI GGGWCCC 1 cut(s) 808
Kzo9I GATC 5 cut(s) 7, 223, 631, 868, 918
Lsp1109I GCAGC 1 cut(s) 688
MaeI CTAG 1 cut(s) 710
MaeII ACGT 1 cut(s) 600
MaeIII GTNAC 1 cut(s) 862
MalI GATC 5 cut(s) 9, 225, 633, 870, 920
MboI GATC 5 cut(s) 7, 223, 631, 868, 918
MboII GAAGA 2 cut(s) 83, 449
MhlI GDGCHC 2 cut(s) 532, 943
MluCI AATT 5 cut(s) 203, 440, 461, 521, 930
MlyI GAGTC 2 cut(s) 343, 896
MnlI CCTC 4 cut(s) 67, 552, 822, 869
MroXI GAANNNNTTC 2 cut(s) 444, 514
MseI TTAA 5 cut(s) 63, 395, 788, 929, 933
MslI CAYNNNNRTG 3 cut(s) 297, 363, 471
MspCI CTTAAG 1 cut(s) 394
MspI CCGG 1 cut(s) 625
MspR9I CCNGG 5 cut(s) 192, 422, 556, 626, 797
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 4 cut(s) 192, 422, 556, 797
MwoI GCNNNNNNNGC 1 cut(s) 710
NciI CCSGG 1 cut(s) 626
NcoI CCATGG 1 cut(s) 358
NdeI CATATG 1 cut(s) 433
NdeII GATC 5 cut(s) 7, 223, 631, 868, 918
NlaIII CATG 5 cut(s) 312, 362, 749, 848, 919
NlaIV GGNNCC 2 cut(s) 809, 810
NmuCI GTSAC 1 cut(s) 862
PacI TTAATTAA 1 cut(s) 933
PagI TCATGA 1 cut(s) 745
PasI CCCWGGG 1 cut(s) 796
PctI GAATGC 1 cut(s) 317
PdmI GAANNNNTTC 2 cut(s) 444, 514
PfeI GAWTC 3 cut(s) 83, 212, 756
PfoI TCCNGGA 1 cut(s) 554
PkrI GCNGC 1 cut(s) 703
PleI GAGTC 2 cut(s) 342, 895
PpsI GAGTC 2 cut(s) 342, 895
Ppu21I YACGTR 1 cut(s) 601
PpuMI RGGWCCY 1 cut(s) 808
PsiI TTATAA 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 808
Psp6I CCWGG 4 cut(s) 190, 420, 554, 795
PspGI CCWGG 4 cut(s) 190, 420, 554, 795
PspN4I GGNNCC 2 cut(s) 809, 810
PspPI GGNCC 4 cut(s) 244, 793, 808, 878
PspPPI RGGWCCY 1 cut(s) 808
RseI CAYNNNNRTG 3 cut(s) 297, 363, 471
SaqAI TTAA 5 cut(s) 63, 395, 788, 929, 933
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 5 cut(s) 7, 223, 631, 868, 918
Sau96I GGNCC 4 cut(s) 244, 793, 808, 878
SchI GAGTC 2 cut(s) 343, 896
ScrFI CCNGG 5 cut(s) 192, 422, 556, 626, 797
SduI GDGCHC 2 cut(s) 532, 943
SetI ASST 9 cut(s) 46, 175, 185, 504, 603, 673, 731, 766, 773
SinI GGWCC 2 cut(s) 244, 808
SmiMI CAYNNNNRTG 3 cut(s) 297, 363, 471
SmlI CTYRAG 2 cut(s) 53, 394
SmoI CTYRAG 2 cut(s) 53, 394
SnaBI TACGTA 1 cut(s) 601
Sse9I AATT 5 cut(s) 203, 440, 461, 521, 930
SspI AATATT 1 cut(s) 219
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 5 cut(s) 190, 420, 554, 624, 795
StyI CCWWGG 2 cut(s) 358, 850
TaaI ACNGT 1 cut(s) 822
TaiI ACGT 1 cut(s) 603
TasI AATT 5 cut(s) 203, 440, 461, 521, 930
TfiI GAWTC 3 cut(s) 83, 212, 756
Tru1I TTAA 5 cut(s) 63, 395, 788, 929, 933
Tru9I TTAA 5 cut(s) 63, 395, 788, 929, 933
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 1 cut(s) 701
Tsp45I GTSAC 1 cut(s) 862
TspDTI ATGAA 6 cut(s) 17, 84, 146, 433, 450, 899
TspGWI ACGGA 1 cut(s) 474
Vha464I CTTAAG 1 cut(s) 394
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 2 cut(s) 244, 808
XapI RAATTY 1 cut(s) 440
XmiI GTMKAC 2 cut(s) 488, 597
XmnI GAANNNNTTC 2 cut(s) 444, 514
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.