Rw5G042140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000253
Physical Location & Seq
Reverse (-)
73911429 .. 73912769
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G042140.1

Sequence Viewer

Length: 954 bp
ATGCGGAAAGAGGTCTTGTTTTCAGAAGAGGACATAAGTAGGTCGGCCGCTTATGACAAGAATCCCCAACCTGCTAAAAGGACGAACAGGTCGGGTGAATATCGAAAAGCTAGGCATTCAAAACGACACCACAACGAGCGACATGACATCAAAGAAACTACCAGAGCACCATTTCAAAATAGTGGGGCAGCAAAGACTCTCAAGTGTGCTCAATTTGAGAGATACACTGTGGAGACACAGCTAAAGGACTTGGAACAAAAGTTAAGGAGACCACTTGAATCAGAGCCAGAAAATTTGGAACCAAAATCAATTTGCTCAACGTCTAAAGAATGTGATGTAGGGGTACTAGTAGAGACCCCAGCGTTGGAGACGAATAATTCTGAACCAAACCTGCAGCAATCAGAGCCTAGGTTGAAAGATTCCAAAATCCTAGCTGAAGATGTCCATGACTCTGTTAGTGGAGCCACTGAACCTATCGATTCCAACGCCTTCGAGCATATTGATAAAGCTCAGCTTTCTCAAGACATGAGCATTATTGAGAAAGATTATGGATTGGACATTGAGCGCATCAATGAGTTAATTCAAAACCATAAAAAGTGTCAAGCTGCCAAGAAAGTCCTTGATTCGGAATTATTGAGCCTTAATCAGGAACTTGAAAGTTTAAAGGCCACCGAACGAAGTATTATTGAGGTAGAAGAGAAAGCTCAACAGCTGCGCAAGGATTATGAGACTGCAAAAAGTCACCTTGAAAAGAAAATAAGTTGGTCCGAGGCTTCTCTTGAGCGTCAAAACAAACTGGATGAAGAGCTTCGTCAGGCAAGGATTGAGGCTCGAGAGGATAAACTTGCAGAATTTAAGAATGTCCAGAGCTTATTTAAAGTCCGGCAAGAGGAGCTTGAGAAGCAAATAGACATTTTGAAGTCGTTTGGTCGACAGCTTAAGCAAAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

36.69

Weight (kDa)

6.02

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 88
Acc16I TGCGCA 1 cut(s) 716
Acc36I ACCTGC 2 cut(s) 79, 399
AccI GTMKAC 1 cut(s) 931
AciI CCGC 2 cut(s) 4, 48
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 2 cut(s) 292, 851
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 4 cut(s) 364, 625, 646, 889
AflII CTTAAG 1 cut(s) 938
AgsI TTSAA 8 cut(s) 120, 176, 278, 415, 584, 656, 749, 919
AhlI ACTAGT 1 cut(s) 346
Alw21I GWGCWC 2 cut(s) 169, 211
Alw26I GTCTC 5 cut(s) 227, 262, 347, 362, 722
Ama87I CYCGRG 1 cut(s) 831
AoxI GGCC 2 cut(s) 45, 666
ApeKI GCWGC 4 cut(s) 188, 394, 605, 712
ApoI RAATTY 2 cut(s) 292, 851
Asp700I GAANNNNTTC 1 cut(s) 807
AspA2I CCTAGG 1 cut(s) 407
AspLEI GCGC 2 cut(s) 567, 717
AspS9I GGNCC 1 cut(s) 765
AsuHPI GGTGA 2 cut(s) 107, 734
AvaI CYCGRG 1 cut(s) 831
AvaII GGWCC 1 cut(s) 765
AvrII CCTAGG 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 169, 211
BbvI GCAGC 4 cut(s) 200, 406, 592, 699
BcoDI GTCTC 5 cut(s) 227, 262, 347, 362, 722
BcuI ACTAGT 1 cut(s) 346
BfaI CTAG 5 cut(s) 111, 347, 408, 431, 952
BfmI CTRYAG 1 cut(s) 392
BfrI CTTAAG 1 cut(s) 938
BfuAI ACCTGC 2 cut(s) 79, 399
BisI GCNGC 5 cut(s) 48, 189, 395, 606, 713
BlnI CCTAGG 1 cut(s) 407
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 5 cut(s) 49, 190, 396, 607, 714
Bme18I GGWCC 1 cut(s) 765
BmeT110I CYCGRG 1 cut(s) 831
BmgT120I GGNCC 1 cut(s) 765
BmiI GGNNCC 2 cut(s) 300, 463
BmsI GCATC 1 cut(s) 576
Bpu1102I GCTNAGC 1 cut(s) 510
BpuEI CTTGAG 4 cut(s) 185, 504, 800, 917
Bsa29I ATCGAT 1 cut(s) 477
BsaI GGTCTC 2 cut(s) 262, 347
BsaJI CCNNGG 2 cut(s) 407, 768
Bsc4I CCNNNNNNNGG 4 cut(s) 364, 625, 646, 889
Bse1I ACTGG 1 cut(s) 801
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 407, 768
BseGI GGATG 1 cut(s) 805
BseLI CCNNNNNNNGG 4 cut(s) 364, 625, 646, 889
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 1 cut(s) 801
BseRI GAGGAG 1 cut(s) 905
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 200, 406, 592, 699
BseYI CCCAGC 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 47, 668
BshVI ATCGAT 1 cut(s) 477
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 169, 211
BsiHKCI CYCGRG 1 cut(s) 831
BsiSI CCGG 1 cut(s) 883
BslI CCNNNNNNNGG 4 cut(s) 364, 625, 646, 889
BsmAI GTCTC 5 cut(s) 227, 262, 347, 362, 722
BsmBI CGTCTC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 2 cut(s) 47, 668
Bso31I GGTCTC 2 cut(s) 262, 347
BsoBI CYCGRG 1 cut(s) 831
Bsp1286I GDGCHC 2 cut(s) 169, 211
Bsp1720I GCTNAGC 1 cut(s) 510
BspACI CCGC 2 cut(s) 4, 48
BspANI GGCC 2 cut(s) 47, 668
BspCNI CTCAG 1 cut(s) 523
BspDI ATCGAT 1 cut(s) 477
BspLI GGNNCC 2 cut(s) 300, 463
BspMAI CTGCAG 1 cut(s) 396
BspMI ACCTGC 2 cut(s) 79, 399
BspQI GCTCTTC 1 cut(s) 798
BspTI CTTAAG 1 cut(s) 938
BspTNI GGTCTC 2 cut(s) 262, 347
BsrI ACTGG 1 cut(s) 801
BssECI CCNNGG 2 cut(s) 407, 768
BssT1I CCWWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 3 cut(s) 21, 690, 798
BstAFI CTTAAG 1 cut(s) 938
BstDEI CTNAG 1 cut(s) 510
BstENI CCTNNNNNAGG 1 cut(s) 644
BstF5I GGATG 1 cut(s) 805
BstHHI GCGC 2 cut(s) 567, 717
BstMAI GTCTC 5 cut(s) 227, 262, 347, 362, 722
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 403, 892, 901
BstSFI CTRYAG 1 cut(s) 392
BstV1I GCAGC 4 cut(s) 200, 406, 592, 699
BstZI CGGCCG 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 2 cut(s) 47, 668
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 1 cut(s) 805
BtsIMutI CAGTG 2 cut(s) 225, 465
BveI ACCTGC 2 cut(s) 79, 399
CfoI GCGC 2 cut(s) 567, 717
Cfr13I GGNCC 1 cut(s) 765
ClaI ATCGAT 1 cut(s) 477
CseI GACGC 1 cut(s) 773
Csp6I GTAC 1 cut(s) 344
CviAII CATG 3 cut(s) 143, 446, 526
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 1 cut(s) 510
DraI TTTAAA 2 cut(s) 663, 877
DrdI GACNNNNNNGTC 1 cut(s) 88
DseDI GACNNNNNNGTC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
Eam1104I CTCTTC 3 cut(s) 21, 690, 798
EarI CTCTTC 3 cut(s) 21, 690, 798
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 407
Eco31I GGTCTC 2 cut(s) 262, 347
Eco47I GGWCC 1 cut(s) 765
Eco52I CGGCCG 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 831
EcoNI CCTNNNNNAGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 407
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 3 cut(s) 146, 449, 529
FaiI YATR 9 cut(s) 35, 54, 144, 447, 498, 527, 549, 591, 726
FalI AAGNNNNNCTT 4 cut(s) 498, 530, 879, 911
FatI CATG 3 cut(s) 142, 445, 525
FblI GTMKAC 1 cut(s) 931
Fnu4HI GCNGC 5 cut(s) 48, 189, 395, 606, 713
FokI GGATG 1 cut(s) 812
Fsp4HI GCNGC 5 cut(s) 48, 189, 395, 606, 713
FspBI CTAG 5 cut(s) 111, 347, 408, 431, 952
FspI TGCGCA 1 cut(s) 716
GlaI GCGC 2 cut(s) 566, 716
GluI GCNGC 5 cut(s) 48, 189, 395, 606, 713
GsaI CCCAGC 1 cut(s) 362
HaeIII GGCC 2 cut(s) 47, 668
HapII CCGG 1 cut(s) 883
HgaI GACGC 1 cut(s) 773
HhaI GCGC 2 cut(s) 567, 717
Hin1II CATG 3 cut(s) 146, 449, 529
Hin6I GCGC 2 cut(s) 565, 715
HinP1I GCGC 2 cut(s) 565, 715
HincII GTYRAC 1 cut(s) 932
HindII GTYRAC 1 cut(s) 932
HinfI GANTC 7 cut(s) 61, 196, 278, 419, 449, 479, 623
HpaII CCGG 1 cut(s) 883
HphI GGTGA 2 cut(s) 107, 734
Hpy166II GTNNAC 1 cut(s) 932
Hpy188I TCNGA 6 cut(s) 25, 283, 382, 403, 628, 769
Hpy188III TCNNGA 5 cut(s) 521, 647, 779, 833, 865
Hpy8I GTNNAC 1 cut(s) 932
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 394, 734, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 403, 892, 901
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 3 cut(s) 146, 449, 529
HspAI GCGC 2 cut(s) 565, 715
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 2 cut(s) 461, 892
Lsp1109I GCAGC 4 cut(s) 200, 406, 592, 699
LweI GCATC 1 cut(s) 576
MaeI CTAG 5 cut(s) 111, 347, 408, 431, 952
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 740
MboII GAAGA 4 cut(s) 38, 449, 707, 815
MhlI GDGCHC 2 cut(s) 169, 211
MluCI AATT 7 cut(s) 212, 292, 309, 376, 579, 629, 851
MlyI GAGTC 2 cut(s) 190, 443
MmeI TCCRAC 2 cut(s) 345, 507
MnlI CCTC 7 cut(s) 4, 22, 682, 763, 820, 829, 883
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 7 cut(s) 263, 578, 642, 662, 855, 876, 939
MspA1I CMGCKG 1 cut(s) 712
MspCI CTTAAG 1 cut(s) 938
MspI CCGG 1 cut(s) 883
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 403, 892, 901
NlaIII CATG 3 cut(s) 146, 449, 529
NlaIV GGNNCC 2 cut(s) 300, 463
NmuCI GTSAC 1 cut(s) 740
NsbI TGCGCA 1 cut(s) 716
PaeR7I CTCGAG 1 cut(s) 831
PciSI GCTCTTC 1 cut(s) 798
PctI GAATGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 5 cut(s) 61, 278, 419, 479, 623
PkrI GCNGC 5 cut(s) 49, 190, 396, 607, 714
PleI GAGTC 2 cut(s) 190, 443
PpsI GAGTC 2 cut(s) 190, 443
PspFI CCCAGC 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 300, 463
PspPI GGNCC 1 cut(s) 765
PstI CTGCAG 1 cut(s) 396
PvuII CAGCTG 1 cut(s) 712
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
SalI GTCGAC 1 cut(s) 930
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 7 cut(s) 263, 578, 642, 662, 855, 876, 939
SatI GCNGC 5 cut(s) 48, 189, 395, 606, 713
Sau96I GGNCC 1 cut(s) 765
SchI GAGTC 2 cut(s) 190, 443
SduI GDGCHC 2 cut(s) 169, 211
SfaNI GCATC 1 cut(s) 576
SfcI CTRYAG 1 cut(s) 392
Sfr274I CTCGAG 1 cut(s) 831
SinI GGWCC 1 cut(s) 765
SlaI CTCGAG 1 cut(s) 831
SmlI CTYRAG 6 cut(s) 200, 519, 779, 831, 896, 938
SmoI CTYRAG 6 cut(s) 200, 519, 779, 831, 896, 938
SpeI ACTAGT 1 cut(s) 346
Sse9I AATT 7 cut(s) 212, 292, 309, 376, 579, 629, 851
SsiI CCGC 2 cut(s) 4, 48
SspMI CTAG 5 cut(s) 111, 347, 408, 431, 952
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 323
TaqI TCGA 5 cut(s) 103, 477, 492, 832, 931
TasI AATT 7 cut(s) 212, 292, 309, 376, 579, 629, 851
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 5 cut(s) 61, 278, 419, 479, 623
Tru1I TTAA 7 cut(s) 263, 578, 642, 662, 855, 876, 939
Tru9I TTAA 7 cut(s) 263, 578, 642, 662, 855, 876, 939
TscAI CASTG 2 cut(s) 232, 472
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 4 cut(s) 188, 394, 605, 712
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 1 cut(s) 816
TspRI CASTG 2 cut(s) 232, 472
Vha464I CTTAAG 1 cut(s) 938
VpaK11BI GGWCC 1 cut(s) 765
XagI CCTNNNNNAGG 1 cut(s) 644
XapI RAATTY 2 cut(s) 292, 851
XhoI CTCGAG 1 cut(s) 831
XmaJI CCTAGG 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 931
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 5 cut(s) 111, 347, 408, 431, 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.