Rh7BG414000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000253
Physical Location & Seq
Reverse (-)
46641739 .. 46642071
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG414000.1

Sequence Viewer

Length: 333 bp
ATGCATGCTCAGGGATTTCTTTGCTCCGAGAGGGCTCCAAAGAGGCCAAGAAAAGATCTTGACTACGGTCCCGAATACCAAAGATCACTACCTTTGAACTCAATTAATCTCAATGTGTCCCTTGAGAGTTGGTCTACGTGGGTTGCAACTGCTAAATTGAACTCTGGCCACCTAGATTTTGATCCTCATGCTGAATACGGTGTCATAAAGAATGTTCGTTATTTTGGTGCTCGGTTTGATGTTGATACATTGATGAAGGTGAACAATGATGAGGAAGATGATTGCAATTTCCAGTTGGAGAAGATTTTTACCCTGCCCTTCATAGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.73

Weight (kDa)

5.07

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 134
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 166
AgsI TTSAA 2 cut(s) 97, 160
Alw21I GWGCWC 1 cut(s) 232
AlwI GGATC 1 cut(s) 176
AoxI GGCC 2 cut(s) 44, 166
AseI ATTAAT 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 168
BanII GRGCYC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 232
BfaI CTAG 1 cut(s) 173
BglII AGATCT 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 36, 70
BoxI GACNNNNGTC 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 180
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 292
BshFI GGCC 2 cut(s) 46, 168
BsiHKAI GWGCWC 1 cut(s) 232
BslFI GGGAC 2 cut(s) 54, 103
BsmFI GGGAC 2 cut(s) 54, 103
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 2 cut(s) 46, 168
Bsp1286I GDGCHC 2 cut(s) 37, 232
Bsp143I GATC 3 cut(s) 55, 83, 181
BspANI GGCC 2 cut(s) 46, 168
BspCNI CTCAG 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 36, 70
BspPI GGATC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 292
BssMI GATC 3 cut(s) 55, 83, 181
Bst4CI ACNGT 2 cut(s) 68, 200
BstBAI YACGTR 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 9
BstKTI GATC 3 cut(s) 58, 86, 184
BstMBI GATC 3 cut(s) 55, 83, 181
BstNSI RCATGY 1 cut(s) 8
BstPAI GACNNNNGTC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 2 cut(s) 46, 168
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 68
CviAII CATG 2 cut(s) 5, 188
CviJI RGCY 3 cut(s) 35, 46, 168
CviKI_1 RGCY 3 cut(s) 35, 46, 168
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 57, 85, 183
DpnII GATC 3 cut(s) 55, 83, 181
EaeI YGGCCR 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 37
FaeI CATG 2 cut(s) 8, 191
FaiI YATR 4 cut(s) 6, 189, 206, 323
FaqI GGGAC 2 cut(s) 54, 103
FatI CATG 2 cut(s) 4, 187
FblI GTMKAC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 37
FspBI CTAG 1 cut(s) 173
HaeIII GGCC 2 cut(s) 46, 168
Hin1II CATG 2 cut(s) 8, 191
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 135, 262
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 59, 71
Hpy8I GTNNAC 2 cut(s) 135, 262
HpyAV CCTTC 2 cut(s) 250, 328
HpyCH4III ACNGT 2 cut(s) 68, 200
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 4, 146, 285
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 2 cut(s) 8, 191
Kzo9I GATC 3 cut(s) 55, 83, 181
LmnI GCTCC 2 cut(s) 29, 40
LpnPI CCDG 3 cut(s) 150, 305, 326
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 137
MalI GATC 3 cut(s) 57, 85, 183
MboI GATC 3 cut(s) 55, 83, 181
MboII GAAGA 2 cut(s) 287, 313
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 37, 232
MlsI TGGCCA 1 cut(s) 168
MluCI AATT 3 cut(s) 102, 155, 286
MluNI TGGCCA 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 4 cut(s) 24, 36, 195, 265
Mox20I TGGCCA 1 cut(s) 168
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 168
MseI TTAA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 332
NdeII GATC 3 cut(s) 55, 83, 181
NlaIII CATG 2 cut(s) 8, 191
NlaIV GGNNCC 2 cut(s) 36, 70
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PctI GAATGC 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 138
PshAI GACNNNNGTC 1 cut(s) 66
PshBI ATTAAT 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 36, 70
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 1 cut(s) 55
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 3 cut(s) 55, 83, 181
Sau96I GGNCC 1 cut(s) 68
SduI GDGCHC 2 cut(s) 37, 232
SetI ASST 4 cut(s) 94, 140, 174, 261
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 102, 155, 286
SspMI CTAG 1 cut(s) 173
TaaI ACNGT 2 cut(s) 68, 200
TaiI ACGT 1 cut(s) 140
TasI AATT 3 cut(s) 102, 155, 286
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TspDTI ATGAA 2 cut(s) 269, 310
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 1 cut(s) 105
XceI RCATGY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 134
XspI CTAG 1 cut(s) 173
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.