Rmu_sc0012566.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012566.1
OG0000253
Physical Location & Seq
Reverse (-)
1 .. 2362
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012566.1_g000001.1.cds

Sequence Viewer

Length: 1229 bp
atgcacttggtgaaatctcctgagcctgatcatcgtgtctttatagtgaacaaacttgctgaagtttctgcggatttgagaaaagaagttcagatttcatctttaccgagaccagagagtcagaattttcaaacgagccttagcaaggttgggccagatggtgataaccttgtcagtagtgagcatattaaccatgataaggtggcgacccttaaagggacattatccagagaggtgaatcttcctaagacaagatctggcactcaagatgcccaaaaggcactcaagaggaaacctgacagtttacatccttctaatccttcaacagctagtcaaaatgtccaacaaacagaaagtggatttagctctaatactgatccttctagagcagaaattgcagctcgaacttctaaaaggcaacctgtagagcgtcagagcaatgggcgtccccaaagggctcaaactactattgatcaaggcgttaagaaaacagttgtgcctcagaaagcctgtatttctagcaaagatctctcaaccaagtgcatgccaactgtagaggatgtagggagctttcgctgtagagcaatgggcgtccccaaagggctcaaactactattgatcaaagcattaagaaaacagaactatcttattggtcatgtgagtgacatttttgtgaaagtttcttcctcaaagacaccagaagatttattggcccatcgtgaagaaatccaattagctttaggtatgctccatcccgtcattgagtctttgaagtctggtaaagatttgttcgagaaatttacctctaccattagagatatgctagcggcagtaggtgattcttcgagaactattgcacttctgaaagagagcacaggagttgatgttgagtttgctgataacctgatttctgactatgaggcgtgtatgaaagtcaaacaggacttagactcccggttggcagattcttccaagaagctccaagacttgcaagctacagaacttgatatcaaagctgacgaggagcgggttaggaagcgtcgtcggaaacatgacagtcagaaggcctctattgagaacaccataaagttgctgaaggaatccataaaagagcaggaggatcaagggcggcaacttcttaaagagaagtcagactgtgtaaaggacaagcttccagagatcgaacaggctatatcttcaagcaagttggagcgagaaaaatatcagaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

409

Amino Acids

45.61

Weight (kDa)

9.17

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 117
AccBSI CCGCTC 1 cut(s) 1027
AciI CCGC 4 cut(s) 71, 827, 1027, 1129
AclWI GGATC 2 cut(s) 371, 1128
AcsI RAATTY 2 cut(s) 124, 797
AcuI CTGAAG 2 cut(s) 81, 1115
AcyI GRCGYC 2 cut(s) 445, 591
AdeI CACNNNGTG 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 145, 199, 216
AgsI TTSAA 4 cut(s) 131, 324, 772, 1200
AluBI AGCT 9 cut(s) 329, 366, 401, 570, 737, 979, 995, 1016, 1171
AluI AGCT 9 cut(s) 329, 366, 401, 570, 737, 979, 995, 1016, 1171
Alw21I GWGCWC 1 cut(s) 875
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 2 cut(s) 371, 1128
AoxI GGCC 3 cut(s) 152, 711, 1065
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 2 cut(s) 124, 797
AspS9I GGNCC 2 cut(s) 152, 712
AsuC2I CCSGG 1 cut(s) 955
AsuHPI GGTGA 4 cut(s) 22, 173, 247, 848
AsuNHI GCTAGC 1 cut(s) 823
BanII GRGCYC 2 cut(s) 460, 606
Bbv12I GWGCWC 1 cut(s) 875
BbvI GCAGC 1 cut(s) 410
BccI CCATC 3 cut(s) 152, 723, 759
BclI TGATCA 3 cut(s) 28, 472, 618
BcnI CCSGG 1 cut(s) 955
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 4 cut(s) 330, 384, 519, 824
BfmI CTRYAG 4 cut(s) 423, 552, 577, 996
BglI GCCNNNNNGGC 1 cut(s) 278
BglII AGATCT 2 cut(s) 254, 526
BisI GCNGC 3 cut(s) 399, 828, 1130
BlsI GCNGC 3 cut(s) 400, 829, 1131
Bme1390I CCNGG 1 cut(s) 955
BmgT120I GGNCC 2 cut(s) 152, 712
BmrFI CCNGG 1 cut(s) 955
BmsI GCATC 1 cut(s) 259
BmtI GCTAGC 1 cut(s) 827
Bpu10I CCTNAGC 2 cut(s) 21, 140
BpuEI CTTGAG 2 cut(s) 249, 269
BpuMI CCSGG 1 cut(s) 955
BsaHI GRCGYC 2 cut(s) 445, 591
BsaI GGTCTC 1 cut(s) 103
BsaXI ACNNNNNCTCC 4 cut(s) 870, 900, 935, 965
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 199, 216
Bse3DI GCAATG 2 cut(s) 445, 591
BseGI GGATG 3 cut(s) 307, 565, 751
BseLI CCNNNNNNNGG 3 cut(s) 145, 199, 216
BseMI GCAATG 2 cut(s) 445, 591
BseMII CTCAG 2 cut(s) 12, 515
BseRI GAGGAG 1 cut(s) 1037
BseXI GCAGC 1 cut(s) 410
BshFI GGCC 3 cut(s) 154, 713, 1067
BsiHKAI GWGCWC 1 cut(s) 875
BsiSI CCGG 1 cut(s) 955
BslFI GGGAC 3 cut(s) 232, 432, 578
BslI CCNNNNNNNGG 3 cut(s) 145, 199, 216
BsmAI GTCTC 1 cut(s) 103
BsmFI GGGAC 3 cut(s) 232, 432, 578
BsnI GGCC 3 cut(s) 154, 713, 1067
Bso31I GGTCTC 1 cut(s) 103
Bsp1286I GDGCHC 3 cut(s) 460, 606, 875
Bsp143I GATC 8 cut(s) 28, 254, 376, 472, 526, 618, 1120, 1179
BspACI CCGC 4 cut(s) 71, 827, 1027, 1129
BspANI GGCC 3 cut(s) 154, 713, 1067
BspCNI CTCAG 2 cut(s) 13, 514
BspOI GCTAGC 1 cut(s) 827
BspPI GGATC 2 cut(s) 371, 1128
BspTNI GGTCTC 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 1027
BsrDI GCAATG 2 cut(s) 445, 591
BssMI GATC 8 cut(s) 28, 254, 376, 472, 526, 618, 1120, 1179
BssNI GRCGYC 2 cut(s) 445, 591
Bst4CI ACNGT 5 cut(s) 302, 493, 553, 1058, 1157
BstACI GRCGYC 2 cut(s) 445, 591
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 3 cut(s) 545, 825, 993
BstDEI CTNAG 5 cut(s) 21, 140, 246, 501, 946
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 307, 565, 751
BstKTI GATC 8 cut(s) 31, 257, 379, 475, 529, 621, 1123, 1182
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 8 cut(s) 28, 254, 376, 472, 526, 618, 1120, 1179
BstMWI GCNNNNNNNGC 2 cut(s) 278, 395
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 1 cut(s) 953
BstSFI CTRYAG 4 cut(s) 423, 552, 577, 996
BstV1I GCAGC 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 254, 526
BstYI RGATCY 2 cut(s) 254, 526
BsuRI GGCC 3 cut(s) 154, 713, 1067
BtsCI GGATG 3 cut(s) 307, 565, 751
Cac8I GCNNGC 3 cut(s) 545, 825, 993
Cfr13I GGNCC 2 cut(s) 152, 712
CseI GACGC 4 cut(s) 419, 434, 580, 1028
CviAII CATG 4 cut(s) 194, 544, 656, 1052
DdeI CTNAG 5 cut(s) 21, 140, 246, 501, 946
DpnI GATC 8 cut(s) 30, 256, 378, 474, 528, 620, 1122, 1181
DpnII GATC 8 cut(s) 28, 254, 376, 472, 526, 618, 1120, 1179
DraIII CACNNNGTG 1 cut(s) 10
DrdI GACNNNNNNGTC 1 cut(s) 117
DseDI GACNNNNNNGTC 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 1067
Eco24I GRGCYC 2 cut(s) 460, 606
Eco31I GGTCTC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 1009
Eco57I CTGAAG 2 cut(s) 81, 1115
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoRV GATATC 1 cut(s) 1009
EcoT38I GRGCYC 2 cut(s) 460, 606
FaeI CATG 4 cut(s) 197, 547, 659, 1055
FaqI GGGAC 3 cut(s) 232, 432, 578
FatI CATG 4 cut(s) 193, 543, 655, 1051
FauI CCCGC 1 cut(s) 1020
FbaI TGATCA 3 cut(s) 28, 472, 618
Fnu4HI GCNGC 3 cut(s) 399, 828, 1130
FokI GGATG 3 cut(s) 294, 572, 738
FriOI GRGCYC 2 cut(s) 460, 606
Fsp4HI GCNGC 3 cut(s) 399, 828, 1130
FspBI CTAG 4 cut(s) 330, 384, 519, 824
GluI GCNGC 3 cut(s) 399, 828, 1130
HaeIII GGCC 3 cut(s) 154, 713, 1067
HapII CCGG 1 cut(s) 955
HgaI GACGC 4 cut(s) 419, 434, 580, 1028
Hin1I GRCGYC 2 cut(s) 445, 591
Hin1II CATG 4 cut(s) 197, 547, 659, 1055
HindIII AAGCTT 1 cut(s) 1169
HinfI GANTC 7 cut(s) 118, 238, 764, 839, 950, 965, 1100
HpaII CCGG 1 cut(s) 955
HphI GGTGA 4 cut(s) 22, 173, 247, 848
Hpy166II GTNNAC 2 cut(s) 49, 305
Hpy188III TCNNGA 9 cut(s) 20, 228, 266, 286, 384, 719, 793, 846, 1175
Hpy8I GTNNAC 2 cut(s) 49, 305
Hpy99I CGWCG 2 cut(s) 1044, 1047
HpyAV CCTTC 5 cut(s) 321, 330, 390, 1057, 1090
HpyCH4III ACNGT 5 cut(s) 302, 493, 553, 1058, 1157
HpyCH4V TGCA 5 cut(s) 4, 398, 543, 857, 991
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 395
HpyF3I CTNAG 5 cut(s) 21, 140, 246, 501, 946
Hsp92I GRCGYC 2 cut(s) 445, 591
Hsp92II CATG 4 cut(s) 197, 547, 659, 1055
Ksp22I TGATCA 3 cut(s) 28, 472, 618
Kzo9I GATC 8 cut(s) 28, 254, 376, 472, 526, 618, 1120, 1179
LmnI GCTCC 5 cut(s) 567, 753, 984, 1024, 1210
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 259
MaeI CTAG 4 cut(s) 330, 384, 519, 824
MaeIII GTNAC 1 cut(s) 662
MalI GATC 8 cut(s) 30, 256, 378, 474, 528, 620, 1122, 1181
MbiI CCGCTC 1 cut(s) 1027
MboI GATC 8 cut(s) 28, 254, 376, 472, 526, 618, 1120, 1179
MboII GAAGA 7 cut(s) 233, 675, 713, 734, 834, 960, 1188
MflI RGATCY 2 cut(s) 254, 526
MhlI GDGCHC 3 cut(s) 460, 606, 875
MluCI AATT 4 cut(s) 124, 393, 731, 797
MlyI GAGTC 3 cut(s) 127, 773, 944
MmeI TCCRAC 3 cut(s) 367, 1025, 1188
MseI TTAA 5 cut(s) 189, 213, 483, 629, 1140
MslI CAYNNNNRTG 2 cut(s) 660, 671
MspI CCGG 1 cut(s) 955
MspR9I CCNGG 1 cut(s) 955
MwoI GCNNNNNNNGC 2 cut(s) 278, 395
NciI CCSGG 1 cut(s) 955
NdeII GATC 8 cut(s) 28, 254, 376, 472, 526, 618, 1120, 1179
NheI GCTAGC 1 cut(s) 823
NlaIII CATG 4 cut(s) 197, 547, 659, 1055
NmuCI GTSAC 1 cut(s) 662
NspI RCATGY 1 cut(s) 547
PaeI GCATGC 1 cut(s) 547
PceI AGGCCT 1 cut(s) 1067
PfeI GAWTC 4 cut(s) 238, 839, 965, 1100
PkrI GCNGC 3 cut(s) 400, 829, 1131
PleI GAGTC 3 cut(s) 126, 772, 944
PpsI GAGTC 3 cut(s) 126, 772, 944
PspPI GGNCC 2 cut(s) 152, 712
PsuI RGATCY 2 cut(s) 254, 526
RseI CAYNNNNRTG 2 cut(s) 660, 671
SaqAI TTAA 5 cut(s) 189, 213, 483, 629, 1140
SatI GCNGC 3 cut(s) 399, 828, 1130
Sau3AI GATC 8 cut(s) 28, 254, 376, 472, 526, 618, 1120, 1179
Sau96I GGNCC 2 cut(s) 152, 712
SchI GAGTC 3 cut(s) 127, 773, 944
ScrFI CCNGG 1 cut(s) 955
SduI GDGCHC 3 cut(s) 460, 606, 875
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 4 cut(s) 423, 552, 577, 996
SmiMI CAYNNNNRTG 2 cut(s) 660, 671
SmlI CTYRAG 2 cut(s) 264, 284
SmoI CTYRAG 2 cut(s) 264, 284
SphI GCATGC 1 cut(s) 547
Sse9I AATT 4 cut(s) 124, 393, 731, 797
SseBI AGGCCT 1 cut(s) 1067
SsiI CCGC 4 cut(s) 71, 827, 1027, 1129
SspMI CTAG 4 cut(s) 330, 384, 519, 824
StuI AGGCCT 1 cut(s) 1067
StyD4I CCNGG 1 cut(s) 953
TaaI ACNGT 5 cut(s) 302, 493, 553, 1058, 1157
TaqI TCGA 4 cut(s) 403, 792, 845, 1182
TasI AATT 4 cut(s) 124, 393, 731, 797
TauI GCSGC 2 cut(s) 830, 1132
TfiI GAWTC 4 cut(s) 238, 839, 965, 1100
Tru1I TTAA 5 cut(s) 189, 213, 483, 629, 1140
Tru9I TTAA 5 cut(s) 189, 213, 483, 629, 1140
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 2 cut(s) 87, 944
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 2 cut(s) 124, 797
XbaI TCTAGA 1 cut(s) 383
XceI RCATGY 1 cut(s) 547
XspI CTAG 4 cut(s) 330, 384, 519, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.