Rh6AG188600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000253
Physical Location & Seq
Forward (+)
33470866 .. 33471411
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG188600.1

Sequence Viewer

Length: 546 bp
ATGTCGCTTGAGAATCGGCCAACGTGGGCTACTCAGGCCAGTGTGCGTTCTGGCATTCTTAGATTCGACCCTCATGCAGAGGATGAGGTCATCAAATCGTGTCCAAGCTATGGCAACTTGTTTCAGGCCTATACTCTGGAAAAGGTGAACAATGCTGAGCATGGTGATGACAAGATGTTGGTCGGAATGAACTTTTATCCAGCACTGCATGGGATGTTGCAGAGTAAGCAAGAATGGGGCCATGATTTTCAATTTCGAGGTCGATCAATCTTTGTCTTTGGCGTATTAGAATGGACTGAAACTATCTTGGAGACCTTCAAGGATACCTTATATAAAGCAGGTATATATGGAGCTGTTGCTATTTCTCGCTATCCTTACGAGTCTTCAAAGAATGTTTGGAGGGCATTTTGTGAATTATGGGGCCCTTTGTCCAACACATTGCATTTTGTCGATGGTGAGATGAGCATTTCTTTATCTGACCTGCAAGTTATCGGAGGTCTGCCCATTTCTGGTGTTCTGTATGAAGAATTTCTTCCGACTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

181

Amino Acids

20.53

Weight (kDa)

5.05

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 114 - 171 3.2e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 329, 489
AccB7I CCANNNNNTGG 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 1 cut(s) 527
AfiI CCNNNNNNNGG 2 cut(s) 110, 509
AgsI TTSAA 3 cut(s) 251, 319, 387
AluBI AGCT 2 cut(s) 108, 353
AluI AGCT 2 cut(s) 108, 353
Alw26I GTCTC 1 cut(s) 305
AoxI GGCC 5 cut(s) 17, 36, 126, 238, 421
ApaI GGGCCC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 527
Asp700I GAANNNNTTC 2 cut(s) 528, 531
AspS9I GGNCC 3 cut(s) 238, 421, 422
AsuHPI GGTGA 3 cut(s) 157, 176, 467
BaeGI GKGCMC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 375
BccI CCATC 1 cut(s) 446
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciVI GTATCC 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 544
BfuAI ACCTGC 2 cut(s) 329, 489
BfuI GTATCC 1 cut(s) 316
BlpI GCTNAGC 1 cut(s) 156
BmgT120I GGNCC 3 cut(s) 238, 421, 422
BmiI GGNNCC 3 cut(s) 239, 422, 423
BpiI GAAGAC 1 cut(s) 375
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 305
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 509
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 437
BseGI GGATG 2 cut(s) 88, 219
BseLI CCNNNNNNNGG 2 cut(s) 110, 509
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 2 cut(s) 47, 147
BseNI ACTGG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 425
BshFI GGCC 5 cut(s) 19, 38, 128, 240, 423
BslI CCNNNNNNNGG 2 cut(s) 110, 509
BsmAI GTCTC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 54
BsnI GGCC 5 cut(s) 19, 38, 128, 240, 423
Bso31I GGTCTC 1 cut(s) 305
Bsp120I GGGCCC 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 1 cut(s) 263
Bsp1720I GCTNAGC 1 cut(s) 156
BspANI GGCC 5 cut(s) 19, 38, 128, 240, 423
BspCNI CTCAG 2 cut(s) 46, 148
BspLI GGNNCC 3 cut(s) 239, 422, 423
BspMI ACCTGC 2 cut(s) 329, 489
BspTNI GGTCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 437
BsrI ACTGG 1 cut(s) 39
BssMI GATC 1 cut(s) 263
BstDEI CTNAG 3 cut(s) 33, 59, 156
BstF5I GGATG 2 cut(s) 88, 219
BstKTI GATC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 1 cut(s) 263
BstMWI GCNNNNNNNGC 2 cut(s) 35, 226
BstSLI GKGCMC 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 375
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 5 cut(s) 19, 38, 128, 240, 423
BtsCI GGATG 2 cut(s) 88, 219
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 46, 203
BveI ACCTGC 2 cut(s) 329, 489
Cfr13I GGNCC 3 cut(s) 238, 421, 422
CviAII CATG 4 cut(s) 74, 161, 209, 242
CviJI RGCY 8 cut(s) 19, 29, 38, 108, 128, 240, 353, 423
CviKI_1 RGCY 8 cut(s) 19, 29, 38, 108, 128, 240, 353, 423
DdeI CTNAG 3 cut(s) 33, 59, 156
DpnI GATC 1 cut(s) 265
DpnII GATC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 17
Eco147I AGGCCT 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 425
Eco31I GGTCTC 1 cut(s) 305
EcoO109I RGGNCCY 2 cut(s) 421, 422
EcoT38I GRGCYC 1 cut(s) 425
FaeI CATG 4 cut(s) 77, 164, 212, 245
FalI AAGNNNNNCTT 3 cut(s) 311, 343, 516
FatI CATG 4 cut(s) 73, 160, 208, 241
FokI GGATG 2 cut(s) 95, 226
FriOI GRGCYC 1 cut(s) 425
FspBI CTAG 1 cut(s) 544
HaeIII GGCC 5 cut(s) 19, 38, 128, 240, 423
Hin1II CATG 4 cut(s) 77, 164, 212, 245
HinfI GANTC 3 cut(s) 13, 63, 380
HphI GGTGA 3 cut(s) 157, 176, 467
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 4 cut(s) 185, 478, 494, 537
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 5 cut(s) 77, 208, 220, 442, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 226
HpyF3I CTNAG 3 cut(s) 33, 59, 156
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 4 cut(s) 77, 164, 212, 245
Kzo9I GATC 1 cut(s) 263
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 9 cut(s) 20, 36, 52, 110, 122, 213, 324, 494, 495
MaeI CTAG 1 cut(s) 544
MaeII ACGT 1 cut(s) 23
MalI GATC 1 cut(s) 265
MboI GATC 1 cut(s) 263
MboII GAAGA 3 cut(s) 375, 524, 536
MhlI GDGCHC 1 cut(s) 425
MluCI AATT 3 cut(s) 251, 413, 527
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 163, 456
MnlI CCTC 6 cut(s) 73, 79, 81, 251, 393, 488
MroXI GAANNNNTTC 2 cut(s) 528, 531
MslI CAYNNNNRTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 35, 226
NdeII GATC 1 cut(s) 263
NlaIII CATG 4 cut(s) 77, 164, 212, 245
NlaIV GGNNCC 3 cut(s) 239, 422, 423
PceI AGGCCT 1 cut(s) 128
PctI GAATGC 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 528, 531
PfeI GAWTC 2 cut(s) 13, 63
PflMI CCANNNNNTGG 1 cut(s) 110
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PspN4I GGNNCC 3 cut(s) 239, 422, 423
PspOMI GGGCCC 1 cut(s) 421
PspPI GGNCC 3 cut(s) 238, 421, 422
RseI CAYNNNNRTG 1 cut(s) 165
Sau3AI GATC 1 cut(s) 263
Sau96I GGNCC 3 cut(s) 238, 421, 422
SchI GAGTC 1 cut(s) 389
SduI GDGCHC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 251, 413, 527
SseBI AGGCCT 1 cut(s) 128
SspMI CTAG 1 cut(s) 544
StuI AGGCCT 1 cut(s) 128
TaiI ACGT 1 cut(s) 26
TaqI TCGA 4 cut(s) 66, 256, 262, 450
TasI AATT 3 cut(s) 251, 413, 527
TfiI GAWTC 2 cut(s) 13, 63
TscAI CASTG 2 cut(s) 46, 210
TspDTI ATGAA 2 cut(s) 203, 537
TspRI CASTG 2 cut(s) 46, 210
Van91I CCANNNNNTGG 1 cut(s) 110
XapI RAATTY 1 cut(s) 527
XmnI GAANNNNTTC 2 cut(s) 528, 531
XspI CTAG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.