Rh6BG178800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000253
Physical Location & Seq
Reverse (-)
30770997 .. 30771389
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG178800.1

Sequence Viewer

Length: 393 bp
ATGAACCCACATGGAGAACTTTTCACTGAACGAGTTCCCGGAAAAGGTGAACGTGTGGCCAAAAGCGGTCAGGAATACGAGAGATCTCTTCCTTTAAGTTCGATCAAGCTCACCATGTCGCTTGAGAGTCGGCCAACGTGGGCTACTCAGGCCAATGTGCAATCTGGCATTCTTAGATTCGATCCTCATGCAGAGGATGAGGTCAGGCCTAGTTATGGCAACATTTTTCAGGCCTATACTCTGGAAAAGGTCAACAATGATGAGCATGGTGATGATAAGATGTTGGTAGGAGCGAACTTTTATCTGGCGCTACACGGAATGTTGCAGAGTAAGCAAGAATGGGGTAGTGACTTAACTTTCGAGGTCAATCCATCTTTGGCTTTGGCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.6

Weight (kDa)

5.14

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 2 cut(s) 57, 131
AfiI CCNNNNNNNGG 2 cut(s) 44, 215
AflIII ACRYGT 1 cut(s) 52
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AlwI GGATC 1 cut(s) 176
AoxI GGCC 5 cut(s) 57, 131, 150, 206, 231
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp700I GAANNNNTTC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 3 cut(s) 59, 103, 281
BalI TGGCCA 1 cut(s) 59
BccI CCATC 1 cut(s) 379
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BcnI CCSGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 311
BglII AGATCT 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 215
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 44, 215
BseMII CTCAG 1 cut(s) 161
BshFI GGCC 5 cut(s) 59, 133, 152, 208, 233
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 44, 215
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 5 cut(s) 59, 133, 152, 208, 233
Bsp143I GATC 3 cut(s) 83, 102, 181
BspACI CCGC 1 cut(s) 66
BspANI GGCC 5 cut(s) 59, 133, 152, 208, 233
BspCNI CTCAG 1 cut(s) 160
BspPI GGATC 1 cut(s) 176
BssMI GATC 3 cut(s) 83, 102, 181
Bst6I CTCTTC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 147, 173
BstF5I GGATG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 3 cut(s) 86, 105, 184
BstMBI GATC 3 cut(s) 83, 102, 181
BstMWI GCNNNNNNNGC 2 cut(s) 149, 331
BstSCI CCNGG 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 5 cut(s) 59, 133, 152, 208, 233
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 24
CfoI GCGC 1 cut(s) 310
CviAII CATG 4 cut(s) 11, 115, 188, 266
CviJI RGCY 8 cut(s) 59, 109, 133, 143, 152, 208, 233, 380
CviKI_1 RGCY 8 cut(s) 59, 109, 133, 143, 152, 208, 233, 380
DdeI CTNAG 2 cut(s) 147, 173
DpnI GATC 3 cut(s) 85, 104, 183
DpnII GATC 3 cut(s) 83, 102, 181
EaeI YGGCCR 2 cut(s) 57, 131
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco147I AGGCCT 2 cut(s) 208, 233
FaeI CATG 4 cut(s) 14, 118, 191, 269
FaiI YATR 7 cut(s) 12, 116, 189, 216, 237, 267, 388
FatI CATG 4 cut(s) 10, 114, 187, 265
FokI GGATG 1 cut(s) 209
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 5 cut(s) 59, 133, 152, 208, 233
HapII CCGG 1 cut(s) 39
HhaI GCGC 1 cut(s) 310
Hin1II CATG 4 cut(s) 14, 118, 191, 269
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 2 cut(s) 127, 177
HpaII CCGG 1 cut(s) 39
HphI GGTGA 3 cut(s) 59, 103, 281
Hpy166II GTNNAC 2 cut(s) 50, 253
Hpy188III TCNNGA 2 cut(s) 71, 242
Hpy8I GTNNAC 2 cut(s) 50, 253
HpyCH4IV ACGT 2 cut(s) 52, 137
HpyCH4V TGCA 3 cut(s) 160, 191, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 331
HpyF3I CTNAG 2 cut(s) 147, 173
HpySE526I ACGT 2 cut(s) 52, 137
Hsp92II CATG 4 cut(s) 14, 118, 191, 269
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 3 cut(s) 83, 102, 181
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 8 cut(s) 52, 56, 134, 150, 190, 215, 227, 290
MaeI CTAG 1 cut(s) 210
MaeII ACGT 2 cut(s) 52, 137
MaeIII GTNAC 1 cut(s) 347
MalI GATC 3 cut(s) 85, 104, 183
MboI GATC 3 cut(s) 83, 102, 181
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 4 cut(s) 187, 193, 195, 355
Mox20I TGGCCA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 33
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 95, 353
MslI CAYNNNNRTG 1 cut(s) 270
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 149, 331
NciI CCSGG 1 cut(s) 39
NdeII GATC 3 cut(s) 83, 102, 181
NlaIII CATG 4 cut(s) 14, 118, 191, 269
NmuCI GTSAC 1 cut(s) 347
PceI AGGCCT 2 cut(s) 208, 233
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 37
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 2 cut(s) 95, 353
Sau3AI GATC 3 cut(s) 83, 102, 181
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 39
SetI ASST 7 cut(s) 49, 55, 111, 140, 204, 252, 366
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SseBI AGGCCT 2 cut(s) 208, 233
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 210
StuI AGGCCT 2 cut(s) 208, 233
StyD4I CCNGG 1 cut(s) 37
TaiI ACGT 2 cut(s) 55, 140
TaqI TCGA 3 cut(s) 101, 180, 360
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 2 cut(s) 95, 353
Tru9I TTAA 2 cut(s) 95, 353
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.