FvH4_7g18610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000253
Physical Location & Seq
Reverse (-)
15486961 .. 15491513
4553 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18610.t2

Sequence Viewer

Length: 792 bp
ATGGAGAGGGGTTGGCGCAGCAACCGACTTGGTGATGGCAGTGCTCCTAAGTCGCCGAGAAGAAATTTATCAACACTGGGAGGCTTGAGATTTGCTGTGCTCTTTCTCACTGTGCGAAATTGGAGTAATTTCGAAGGATTTCCCACTGGTCAAAAGCTTGTTTCTTCACAGGTAATGGATGCATATGGTCGAATTTCCCGCGAGGCAGCTTTGGACAAACACAGGCAGGTTGTTGGAAAGGGCATAGAGTACGTGAGATCACAGCCTTTAAGCTCCATTCATGTTGATGTCCCTCCTAAAGACATCATTACCTTGGTGACAGAAGTTGAAATGAACTCAGGCTTTCTTACATTTCGCCAAGATTTGGAGGATCAAGTGATAAGAACAACCCACAACTTTTCCCATGTATTTAAGGGGCATACTTTGGAGAAGGTTGATAACAGACATGATGGAGGTCTTTTCACTTTCGAAGAGAATTTTTACCCGATACTTCACAGGATGCTAAACACCAAACAAGATTGGTCTTCGAGCCTTTGTTTCCGGGGTTGTGCTACACTTGAGATAGGCGTAATGGAGTGGACAGAATTCATATTAGCCAATTTTGAAGGCGTATTGAATCAAGCTGGAATATTTGGTGCCGTTGGCGTCTCTCGATATCCTTACCATTATTGCACGAGCACATGGAAAGCATTCTTGGAATTGTGGAGTCCTTTGACGAACACTTTACCTTTGGCTTTGGGTGTTGGTGCCGTTGGCGTCTCTTCTGTCACTTTGGCTCTATTTTTGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.51

Weight (kDa)

7.79

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 217
AccB1I GGYRCC 2 cut(s) 635, 746
AccB7I CCANNNNNTGG 1 cut(s) 364
AccII CGCG 1 cut(s) 201
AciI CCGC 1 cut(s) 199
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 4 cut(s) 64, 192, 475, 584
AcyI GRCGYC 2 cut(s) 645, 756
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 3 cut(s) 329, 605, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
AluBI AGCT 4 cut(s) 157, 209, 273, 623
AluI AGCT 4 cut(s) 157, 209, 273, 623
Alw21I GWGCWC 3 cut(s) 46, 102, 680
Alw26I GTCTC 2 cut(s) 652, 763
AlwI GGATC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 18, 206
ApoI RAATTY 4 cut(s) 64, 192, 475, 584
Asp700I GAANNNNTTC 2 cut(s) 138, 689
AspLEI GCGC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 44, 328
AsuII TTCGAA 2 cut(s) 132, 468
BanI GGYRCC 2 cut(s) 635, 746
BauI CACGAG 1 cut(s) 673
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 3 cut(s) 46, 102, 680
BbvI GCAGC 2 cut(s) 30, 218
BccI CCATC 2 cut(s) 29, 443
BceAI ACGGC 2 cut(s) 623, 734
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 2 cut(s) 652, 763
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 2 cut(s) 19, 207
BlsI GCNGC 2 cut(s) 20, 208
Bme1390I CCNGG 1 cut(s) 542
BmiI GGNNCC 2 cut(s) 637, 748
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 86
BmsI GCATC 2 cut(s) 169, 489
BmuI ACTGGG 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 516
Bpu14I TTCGAA 2 cut(s) 132, 468
BpuEI CTTGAG 2 cut(s) 106, 578
BpuMI CCSGG 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 253
BsaHI GRCGYC 2 cut(s) 645, 756
BsaJI CCNNGG 2 cut(s) 312, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 81, 151
BseDI CCNNGG 2 cut(s) 312, 541
BseGI GGATG 2 cut(s) 184, 504
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 81, 151
BseXI GCAGC 2 cut(s) 30, 218
Bsh1236I CGCG 1 cut(s) 201
BshNI GGYRCC 2 cut(s) 635, 746
BsiHKAI GWGCWC 3 cut(s) 46, 102, 680
BsiSI CCGG 1 cut(s) 541
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 652, 763
BsmBI CGTCTC 2 cut(s) 652, 763
BsmFI GGGAC 1 cut(s) 275
BsmI GAATGC 1 cut(s) 689
Bsp119I TTCGAA 2 cut(s) 132, 468
Bsp1286I GDGCHC 3 cut(s) 46, 102, 680
Bsp143I GATC 2 cut(s) 257, 370
BspACI CCGC 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 350
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 637, 748
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 1 cut(s) 378
BspT104I TTCGAA 2 cut(s) 132, 468
BspT107I GGYRCC 2 cut(s) 635, 746
BsrI ACTGG 2 cut(s) 81, 151
BssECI CCNNGG 2 cut(s) 312, 541
BssMI GATC 2 cut(s) 257, 370
BssNI GRCGYC 2 cut(s) 645, 756
BssSI CACGAG 1 cut(s) 673
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 673
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 465, 766
BstACI GRCGYC 2 cut(s) 645, 756
BstBAI YACGTR 1 cut(s) 253
BstBI TTCGAA 2 cut(s) 132, 468
BstDEI CTNAG 2 cut(s) 48, 337
BstF5I GGATG 2 cut(s) 184, 504
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 2 cut(s) 260, 373
BstMAI GTCTC 2 cut(s) 652, 763
BstMBI GATC 2 cut(s) 257, 370
BstSCI CCNGG 1 cut(s) 540
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 30, 218
BstV2I GAAGAC 1 cut(s) 516
BtsCI GGATG 2 cut(s) 184, 504
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 4 cut(s) 46, 74, 108, 144
BveI ACCTGC 1 cut(s) 217
CfoI GCGC 1 cut(s) 18
CseI GACGC 2 cut(s) 634, 745
Csp6I GTAC 1 cut(s) 250
CviAII CATG 4 cut(s) 281, 404, 446, 681
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 48, 337
DpnI GATC 2 cut(s) 259, 372
DpnII GATC 2 cut(s) 257, 370
Eam1104I CTCTTC 2 cut(s) 465, 766
EarI CTCTTC 2 cut(s) 465, 766
Eco130I CCWWGG 1 cut(s) 312
Eco32I GATATC 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 584
EcoRV GATATC 1 cut(s) 656
EcoT14I CCWWGG 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 2 cut(s) 652, 763
FaeI CATG 4 cut(s) 284, 407, 449, 684
FaiI YATR 9 cut(s) 184, 186, 245, 282, 405, 420, 447, 590, 682
FaqI GGGAC 1 cut(s) 275
FatI CATG 4 cut(s) 280, 403, 445, 680
FauI CCCGC 1 cut(s) 206
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 19, 207
FokI GGATG 2 cut(s) 191, 511
Fsp4HI GCNGC 2 cut(s) 19, 207
GlaI GCGC 1 cut(s) 17
GluI GCNGC 2 cut(s) 19, 207
HapII CCGG 1 cut(s) 541
HgaI GACGC 2 cut(s) 634, 745
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 2 cut(s) 645, 756
Hin1II CATG 4 cut(s) 284, 407, 449, 684
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 2 cut(s) 616, 706
HpaII CCGG 1 cut(s) 541
HphI GGTGA 2 cut(s) 44, 328
Hpy166II GTNNAC 1 cut(s) 579
Hpy188III TCNNGA 1 cut(s) 651
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 3 cut(s) 128, 424, 599
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 182, 672
HpyF3I CTNAG 2 cut(s) 48, 337
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 2 cut(s) 645, 756
Hsp92II CATG 4 cut(s) 284, 407, 449, 684
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 2 cut(s) 257, 370
LmnI GCTCC 2 cut(s) 49, 278
LpnPI CCDG 9 cut(s) 62, 132, 155, 208, 212, 324, 481, 554, 609
Lsp1109I GCAGC 2 cut(s) 30, 218
LweI GCATC 2 cut(s) 169, 489
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 316, 766
MalI GATC 2 cut(s) 259, 372
MboI GATC 2 cut(s) 257, 370
MboII GAAGA 5 cut(s) 72, 156, 482, 516, 753
MhlI GDGCHC 3 cut(s) 46, 102, 680
MluCI AATT 8 cut(s) 64, 118, 127, 192, 475, 584, 598, 698
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 5 cut(s) 74, 196, 303, 361, 446
Mph1103I ATGCAT 1 cut(s) 184
MroXI GAANNNNTTC 2 cut(s) 138, 689
MseI TTAA 2 cut(s) 269, 411
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 1 cut(s) 541
MspR9I CCNGG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 689
MvnI CGCG 1 cut(s) 201
NciI CCSGG 1 cut(s) 542
NdeI CATATG 1 cut(s) 184
NdeII GATC 2 cut(s) 257, 370
NlaIII CATG 4 cut(s) 284, 407, 449, 684
NlaIV GGNNCC 2 cut(s) 637, 748
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 316, 766
NsiI ATGCAT 1 cut(s) 184
NspV TTCGAA 2 cut(s) 132, 468
PctI GAATGC 1 cut(s) 689
PdmI GAANNNNTTC 2 cut(s) 138, 689
PfeI GAWTC 1 cut(s) 616
PflMI CCANNNNNTGG 1 cut(s) 364
PkrI GCNGC 2 cut(s) 20, 208
PleI GAGTC 1 cut(s) 714
PpsI GAGTC 1 cut(s) 714
Ppu21I YACGTR 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 637, 748
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 269, 411
SatI GCNGC 2 cut(s) 19, 207
Sau3AI GATC 2 cut(s) 257, 370
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 3 cut(s) 46, 102, 680
SfaNI GCATC 2 cut(s) 169, 489
SfuI TTCGAA 2 cut(s) 132, 468
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 85, 557
SmoI CTYRAG 2 cut(s) 85, 557
Sse9I AATT 8 cut(s) 64, 118, 127, 192, 475, 584, 598, 698
SsiI CCGC 1 cut(s) 199
SspI AATATT 1 cut(s) 630
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 255
TaqI TCGA 5 cut(s) 132, 190, 468, 527, 652
TasI AATT 8 cut(s) 64, 118, 127, 192, 475, 584, 598, 698
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 2 cut(s) 269, 411
Tru9I TTAA 2 cut(s) 269, 411
TscAI CASTG 4 cut(s) 46, 81, 115, 151
TseFI GTSAC 2 cut(s) 316, 766
TseI GCWGC 2 cut(s) 18, 206
Tsp45I GTSAC 2 cut(s) 316, 766
TspDTI ATGAA 3 cut(s) 269, 347, 577
TspRI CASTG 4 cut(s) 46, 81, 115, 151
Van91I CCANNNNNTGG 1 cut(s) 364
XapI RAATTY 4 cut(s) 64, 192, 475, 584
XmnI GAANNNNTTC 2 cut(s) 138, 689
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.