Rh1AG124600

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
23207276 .. 23207716
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG124600.1

Sequence Viewer

Length: 441 bp
ATGGCGTGTTTGATGGCAAAAGGAGTTAGAGTTTCCATTACACCAACAGCATTAGGATATATTTATCACCGTCTTAGAGAAATTGCTTCTCATCCGGTAGGGGATGTCCCCCCCAAAGTGTGCTTACCCATACATTATGTACTTGGCTGGCTCGGGGAATATTTTCCACAGTTGTGTAAACGACGAGCGGACAGTGAGTTTCCAGCAGATTATCCGCGTCTAGCGAGGTATGCTTATGTTGCAAGCAAAGATTTGTCAATTACTTGTGCCAGAATGGTCTTTCGGGATAGCAAGTCTGTAATCTATCGTCCCCATGCTTTTCTCGAAACTGAGGGCTGTTTTTTGTTAGACGATGAGACTCTGTCAGACGAGAGATTTGAGTTTCTTTTTGGCCTACGCTCTGCATGCCTTCCTGTGAGAGTTGATGGTCGCTCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.66

Weight (kDa)

8.23

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AccII CGCG 1 cut(s) 217
AciI CCGC 2 cut(s) 188, 215
AfaI GTAC 1 cut(s) 141
AleI CACNNNNGTG 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 391
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
Asp700I GAANNNNTTC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 152
BccI CCATC 2 cut(s) 7, 419
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 221
BmeT110I CYCGRG 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
BseGI GGATG 2 cut(s) 91, 109
BseMII CTCAG 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 92, 294
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 2 cut(s) 92, 294
BsnI GGCC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 152
BspACI CCGC 2 cut(s) 188, 215
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 71, 171, 194
BstC8I GCNNGC 3 cut(s) 149, 244, 406
BstDEI CTNAG 2 cut(s) 74, 330
BstF5I GGATG 2 cut(s) 91, 109
BstFNI CGCG 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 350
BstMWI GCNNNNNNNGC 3 cut(s) 230, 239, 405
BstNSI RCATGY 1 cut(s) 408
BstUI CGCG 1 cut(s) 217
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 2 cut(s) 91, 109
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 3 cut(s) 149, 244, 406
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 140
CviAII CATG 2 cut(s) 314, 405
CviJI RGCY 4 cut(s) 147, 151, 336, 393
CviKI_1 RGCY 4 cut(s) 147, 151, 336, 393
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 74, 330
Eco88I CYCGRG 1 cut(s) 152
FaeI CATG 2 cut(s) 317, 408
FaiI YATR 7 cut(s) 60, 131, 138, 231, 237, 315, 406
FaqI GGGAC 2 cut(s) 92, 294
FatI CATG 2 cut(s) 313, 404
FokI GGATG 2 cut(s) 78, 116
FspBI CTAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 317, 408
HinfI GANTC 1 cut(s) 358
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 2 cut(s) 284, 323
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 3 cut(s) 71, 171, 194
HpyCH4V TGCA 2 cut(s) 242, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 239, 405
HpyF3I CTNAG 2 cut(s) 74, 330
Hsp92II CATG 2 cut(s) 317, 408
LpnPI CCDG 5 cut(s) 108, 133, 216, 283, 426
MaeI CTAG 1 cut(s) 221
MbiI CCGCTC 1 cut(s) 188
MluCI AATT 2 cut(s) 81, 258
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 2 cut(s) 219, 325
MroXI GAANNNNTTC 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 172
MspI CCGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 3 cut(s) 230, 239, 405
NlaIII CATG 2 cut(s) 317, 408
NspI RCATGY 1 cut(s) 408
OliI CACNNNNGTG 1 cut(s) 172
PaeI GCATGC 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 162
PflFI GACNNNGTC 1 cut(s) 361
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PsyI GACNNNGTC 1 cut(s) 361
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 172
SchI GAGTC 1 cut(s) 352
SetI ASST 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 172
SphI GCATGC 1 cut(s) 408
Sse9I AATT 2 cut(s) 81, 258
SsiI CCGC 2 cut(s) 188, 215
SspI AATATT 1 cut(s) 161
SspMI CTAG 1 cut(s) 221
TaaI ACNGT 3 cut(s) 71, 171, 194
TaqI TCGA 1 cut(s) 324
TasI AATT 2 cut(s) 81, 258
TatI WGTACW 1 cut(s) 139
TscAI CASTG 1 cut(s) 199
TspRI CASTG 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 361
XceI RCATGY 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.