FvH4_7g16740

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000253
Physical Location & Seq
Reverse (-)
14308819 .. 14312783
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16740.t1

Sequence Viewer

Length: 1056 bp
ATGGCGATCCGAAGGTCCTGGCCACTCGCCGAAGCTCAAGGTGGTGGTCTGGTCCATGCTCTCCGCTGTGCCGAAGAAGACGACCCTTCGCCGGAGAAGCTGCAAGGACCTTCGGCGGCGTCGAAAAGGAAGGAAGAAGAAGTTTCGCCGGAGAAAGGAAGAAGAAGAAGAAGAACGCAGATGCTCACCTTGTCTTTATATGATGTTGTAGGCAAAAGTGTCAGTTTGCTCCTGCAGTCAGGTGAACAAGGTGAGTCTGCTAGTCTTCGAGATTTGAACGGCAATGGGGCCTTGCTTGGGAAGATAATGGATGCACATGGCTATATTTGTGCTGAAAGGGCACTCAACAAAGTAGTCACGGAGGGTCCAGAGTATAAGAGGTCTTCATCATTGTGTTCTGTCGAAATTGATGCTCCAGTCAAGGACCATGTATCATGGGTCAGTGAAGTGAATGTGCATTCTGGGTTTCTTACCTTCTGTCATGATTCAGAGGATCAAGCCATAAAAACAAGCCGAACTTTTGGTGCTAGGTTCACAGCTCACACTCTTGAGAAGGTTAACAATGATGAGGATGGGGATTCCTTTGTTCATCAAGAGAATTTGTATCCCATCTTGTATAAAATGCTTAACCGAAAAGAAGACTGGGGAATTCGACTTTACCTTCGGGGTCGCGCTTCTTTTGAGCTTAGAGTAATGGAGTGGACAAAATCTATATTAGATCATTTTAAAGGGAAGTTAGACCAAGCAGGCATATATGGTGCTGTTGGTGTTTCTCGTTTCCCTTATCACTTCTGTGCGAACACGTGGAAGGCTTTTTGTGAACTCTGGAGTCCTTTAACTAATACTTTACACCACAGGACTGGTGAGATGGGTATATCTCTGTGTGACTTGATGCTCATCGGTGGTTTGCCAATTTTGGGTGTTCTATATGAAGAGTTTATCCCTGCAAATAAAGAATTACAACGTACTAATCCATCTACTCTTGTTGAGCTTCTGAATATACATTATGAGTTGTGTGTCTCTATCGGCAAGGATTATATTCTTTGGGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

352

Amino Acids

39.49

Weight (kDa)

6.08

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 250 - 307 7.1e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 672
AciI CCGC 2 cut(s) 64, 116
AclWI GGATC 1 cut(s) 501
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 2 cut(s) 598, 648
AcvI CACGTG 1 cut(s) 804
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 1 cut(s) 967
AfiI CCNNNNNNNGG 4 cut(s) 91, 155, 297, 917
AflIII ACRYGT 1 cut(s) 801
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 17
AleI CACNNNNGTG 1 cut(s) 792
AluBI AGCT 5 cut(s) 35, 100, 539, 685, 991
AluI AGCT 5 cut(s) 35, 100, 539, 685, 991
Alw26I GTCTC 1 cut(s) 1024
AlwI GGATC 1 cut(s) 501
AoxI GGCC 2 cut(s) 20, 288
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 2 cut(s) 598, 648
ArsI GACNNNNNNTTYG 2 cut(s) 645, 677
AspLEI GCGC 1 cut(s) 674
AspS9I GGNCC 6 cut(s) 15, 52, 107, 288, 365, 424
AsuHPI GGTGA 4 cut(s) 178, 254, 263, 875
AvaII GGWCC 5 cut(s) 15, 52, 107, 365, 424
BaeGI GKGCMC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 804
BbsI GAAGAC 4 cut(s) 84, 257, 375, 645
BbvI GCAGC 1 cut(s) 87
BccI CCATC 4 cut(s) 566, 617, 862, 982
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 1 cut(s) 19
BciVI GTATCC 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 1024
BfaI CTAG 2 cut(s) 261, 528
BfmI CTRYAG 1 cut(s) 233
BfuI GTATCC 1 cut(s) 615
BisI GCNGC 2 cut(s) 101, 117
BlsI GCNGC 2 cut(s) 102, 118
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 5 cut(s) 15, 52, 107, 365, 424
BmgT120I GGNCC 6 cut(s) 15, 52, 107, 288, 365, 424
BmiI GGNNCC 2 cut(s) 289, 366
BmrFI CCNGG 1 cut(s) 19
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 4 cut(s) 171, 301, 400, 882
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 4 cut(s) 84, 257, 375, 645
BpmI CTGGAG 2 cut(s) 399, 847
BpuEI CTTGAG 2 cut(s) 21, 569
BsaAI YACGTR 1 cut(s) 804
BsaBI GATNNNNATC 1 cut(s) 896
BsaHI GRCGYC 1 cut(s) 119
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 155, 297, 917
Bse1I ACTGG 3 cut(s) 416, 647, 865
Bse3DI GCAATG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 896
BseBI CCWGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 316, 577
BseJI GATNNNNATC 1 cut(s) 896
BseLI CCNNNNNNNGG 4 cut(s) 91, 155, 297, 917
BseMI GCAATG 1 cut(s) 289
BseNI ACTGG 3 cut(s) 416, 647, 865
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 672
BshFI GGCC 2 cut(s) 22, 290
BsiSI CCGG 2 cut(s) 92, 149
BslI CCNNNNNNNGG 4 cut(s) 91, 155, 297, 917
BsmAI GTCTC 1 cut(s) 1024
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 22, 290
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 4 cut(s) 6, 493, 718, 1048
BspACI CCGC 2 cut(s) 64, 116
BspANI GGCC 2 cut(s) 22, 290
BspFNI CGCG 1 cut(s) 672
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 289, 366
BspMAI CTGCAG 1 cut(s) 237
BspPI GGATC 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 3 cut(s) 416, 647, 865
BssMI GATC 4 cut(s) 6, 493, 718, 1048
BssNI GRCGYC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 927
BstACI GRCGYC 1 cut(s) 119
BstBAI YACGTR 1 cut(s) 804
BstC8I GCNNGC 1 cut(s) 748
BstDEI CTNAG 1 cut(s) 686
BstF5I GGATG 2 cut(s) 316, 577
BstFNI CGCG 1 cut(s) 672
BstHHI GCGC 1 cut(s) 674
BstKTI GATC 4 cut(s) 9, 496, 721, 1051
BstMAI GTCTC 1 cut(s) 1024
BstMBI GATC 4 cut(s) 6, 493, 718, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 97, 338
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 233
BstSLI GKGCMC 1 cut(s) 343
BstUI CGCG 1 cut(s) 672
BstV1I GCAGC 1 cut(s) 87
BstV2I GAAGAC 4 cut(s) 84, 257, 375, 645
BstXI CCANNNNNNTGG 1 cut(s) 860
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 2 cut(s) 22, 290
BtsCI GGATG 2 cut(s) 316, 577
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 748
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 674
Cfr13I GGNCC 6 cut(s) 15, 52, 107, 288, 365, 424
CseI GACGC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 966
CviAII CATG 5 cut(s) 56, 317, 428, 435, 482
CviQI GTAC 1 cut(s) 966
DdeI CTNAG 1 cut(s) 686
DpnI GATC 4 cut(s) 8, 495, 720, 1050
DpnII GATC 4 cut(s) 6, 493, 718, 1048
DraI TTTAAA 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 927
EarI CTCTTC 1 cut(s) 927
Eco47I GGWCC 5 cut(s) 15, 52, 107, 365, 424
Eco72I CACGTG 1 cut(s) 804
EcoO109I RGGNCCY 3 cut(s) 15, 107, 288
EcoRI GAATTC 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 17
FaeI CATG 5 cut(s) 59, 320, 431, 438, 485
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FatI CATG 5 cut(s) 55, 316, 427, 434, 481
Fnu4HI GCNGC 2 cut(s) 101, 117
FokI GGATG 2 cut(s) 323, 584
Fsp4HI GCNGC 2 cut(s) 101, 117
FspBI CTAG 2 cut(s) 261, 528
GlaI GCGC 1 cut(s) 673
GluI GCNGC 2 cut(s) 101, 117
GsuI CTGGAG 2 cut(s) 399, 847
HaeIII GGCC 2 cut(s) 22, 290
HapII CCGG 2 cut(s) 92, 149
HgaI GACGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 674
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 5 cut(s) 59, 320, 431, 438, 485
Hin6I GCGC 1 cut(s) 672
HinP1I GCGC 1 cut(s) 672
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 4 cut(s) 254, 485, 578, 829
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 2 cut(s) 92, 149
HphI GGTGA 4 cut(s) 178, 254, 263, 875
Hpy166II GTNNAC 5 cut(s) 245, 534, 559, 702, 821
Hpy188I TCNGA 3 cut(s) 11, 490, 996
Hpy188III TCNNGA 6 cut(s) 269, 368, 482, 548, 593, 826
Hpy8I GTNNAC 5 cut(s) 245, 534, 559, 702, 821
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 8 cut(s) 6, 96, 120, 124, 484, 547, 671, 802
HpyCH4IV ACGT 2 cut(s) 803, 964
HpyCH4V TGCA 5 cut(s) 103, 235, 314, 457, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 338
HpyF3I CTNAG 1 cut(s) 686
HpySE526I ACGT 2 cut(s) 803, 964
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 5 cut(s) 59, 320, 431, 438, 485
HspAI GCGC 1 cut(s) 672
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 4 cut(s) 6, 493, 718, 1048
LmnI GCTCC 2 cut(s) 234, 418
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 4 cut(s) 171, 301, 400, 882
MaeI CTAG 2 cut(s) 261, 528
MaeII ACGT 2 cut(s) 803, 964
MaeIII GTNAC 2 cut(s) 355, 884
MalI GATC 4 cut(s) 8, 495, 720, 1050
MboI GATC 4 cut(s) 6, 493, 718, 1048
MhlI GDGCHC 1 cut(s) 343
MlsI TGGCCA 1 cut(s) 22
MluCI AATT 5 cut(s) 405, 598, 648, 912, 956
MluNI TGGCCA 1 cut(s) 22
MlyI GAGTC 2 cut(s) 263, 838
MnlI CCTC 4 cut(s) 355, 372, 484, 562
Mox20I TGGCCA 1 cut(s) 22
MscI TGGCCA 1 cut(s) 22
MseI TTAA 4 cut(s) 558, 627, 726, 836
MslI CAYNNNNRTG 2 cut(s) 391, 792
Msp20I TGGCCA 1 cut(s) 22
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 2 cut(s) 92, 149
MspR9I CCNGG 1 cut(s) 19
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 19
MvnI CGCG 1 cut(s) 672
MwoI GCNNNNNNNGC 2 cut(s) 97, 338
NdeII GATC 4 cut(s) 6, 493, 718, 1048
NlaIII CATG 5 cut(s) 59, 320, 431, 438, 485
NlaIV GGNNCC 2 cut(s) 289, 366
NmuCI GTSAC 2 cut(s) 355, 884
OliI CACNNNNGTG 1 cut(s) 792
PagI TCATGA 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 485, 578
PkrI GCNGC 2 cut(s) 102, 118
PleI GAGTC 2 cut(s) 262, 837
PmaCI CACGTG 1 cut(s) 804
PmlI CACGTG 1 cut(s) 804
PpsI GAGTC 2 cut(s) 262, 837
Ppu21I YACGTR 1 cut(s) 804
PpuMI RGGWCCY 2 cut(s) 15, 107
Psp5II RGGWCCY 2 cut(s) 15, 107
Psp6I CCWGG 1 cut(s) 17
PspCI CACGTG 1 cut(s) 804
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 289, 366
PspPI GGNCC 6 cut(s) 15, 52, 107, 288, 365, 424
PspPPI RGGWCCY 2 cut(s) 15, 107
PstI CTGCAG 1 cut(s) 237
RsaI GTAC 1 cut(s) 967
RsaNI GTAC 1 cut(s) 966
RseI CAYNNNNRTG 2 cut(s) 391, 792
SaqAI TTAA 4 cut(s) 558, 627, 726, 836
SatI GCNGC 2 cut(s) 101, 117
Sau3AI GATC 4 cut(s) 6, 493, 718, 1048
Sau96I GGNCC 6 cut(s) 15, 52, 107, 288, 365, 424
SchI GAGTC 2 cut(s) 263, 838
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 1 cut(s) 343
SfaNI GCATC 4 cut(s) 171, 301, 400, 882
SfcI CTRYAG 1 cut(s) 233
SinI GGWCC 5 cut(s) 15, 52, 107, 365, 424
SmiMI CAYNNNNRTG 2 cut(s) 391, 792
SmlI CTYRAG 2 cut(s) 36, 548
SmoI CTYRAG 2 cut(s) 36, 548
Sse9I AATT 5 cut(s) 405, 598, 648, 912, 956
SsiI CCGC 2 cut(s) 64, 116
SspMI CTAG 2 cut(s) 261, 528
StyD4I CCNGG 1 cut(s) 17
TaiI ACGT 2 cut(s) 806, 967
TaqI TCGA 4 cut(s) 122, 268, 402, 652
TasI AATT 5 cut(s) 405, 598, 648, 912, 956
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 2 cut(s) 485, 578
Tru1I TTAA 4 cut(s) 558, 627, 726, 836
Tru9I TTAA 4 cut(s) 558, 627, 726, 836
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 2 cut(s) 355, 884
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 2 cut(s) 355, 884
TspDTI ATGAA 3 cut(s) 375, 578, 945
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 5 cut(s) 15, 52, 107, 365, 424
XapI RAATTY 2 cut(s) 598, 648
XspI CTAG 2 cut(s) 261, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.