Rmu_sc0011452.1_g000014

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011452.1
OG0000253
Physical Location & Seq
Reverse (-)
28800 .. 31593
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011452.1_g000014.1.cds

Sequence Viewer

Length: 2706 bp
atggatgctcaaggatttctttgctccgagagagccccaaagaaaccagggaaagatcttgactacggtcttgaataccgaagatcgttacctttgaactcgatcagtctcacggtgtcccttgagagtaggcctacctgggttaccactgccaacttgaattctggtcaccttagattcgatcctcatgccgaagacggtgtcataaagaatgttcgttatttcggtgctcattttgatgctcacacgttgatgaaggcaaacaatgaagaggacggtgacaacaagttcccagttggagaagatttttacctagcccttcatagaatgctgaagtgtaagaaagactggggtgaagacttctgttttcgtggtcgggcagtatttgagcatggcattctagaatggacggaaaccaccctaactgaatttgaagagacattagacacagctggtatcttcggtgcagttgctgtttcccgttatccgtatgagtattgcagtaatgtgtggagggcattctgtgagctgtgggggcctttaacaaacacttttcaccatgcagatggggaaatgagcatctctttgcatgatttgaatgttattggaggattgccggtttcaggagaaccatacgaagaattcattcctccaaacaaagatctggtgaaggttgaattataccattctacggttgcagagctcttgaggatttatacctatctgtgcgcagcttataagagcatatatgtctactggccatggtggatcgaacatttttatcgtggggagataatttacggagcctatggtgaatgtaagaattctggggttccgaaactgagagaaccaaagcttgagttgaagatttcaaaggaaggaagactggctgcattcctcgcattctggcttagcaggttcgttctcccttccaacagtaagaagataagacctgagactttctgtatggcctctttgatggcacagggcatcagagtatctcttgcgcccacagtactaggttatgtgtaccatggtcttggtgagatggctactcactctgccggtcctggctcttccaactcttgtttgcctatccactacgtcattggctggcttggagaatattttccttatctgtattcatcacgctctgataaagaattccccgtagggtatccccgtttggccaggtatgcaggttttcaaggcaggagtctaagcattacagaggctcgtatggtttgcaggaccaataaatctgtcgtgcatcgccctatctctgtagcctgtgaaaaggaccgttttttgcttgatgacgacaaactgcctgatgtgttgtttgaggtcctcatctgtatgcgttctgcagtgcttcctgtgcgagttggccagagtcttttccttgagccctattatccaaacaggtttgctcgtcaatttggtattgatcagagtgttccctcttacaaactatcctttagtgtttctaaaaggcagcaatgtggtgttgaggatctgctgagggcacagactatcctgtataggaagaacactacctctcgtttctttatcccacgctcttctcgttctggacagtgtacatggtggtactgcaggtggtggtcaagagcttgtactccttacttggggctatcagtgtccaaaaccttcatgactttgaacaagcgccctcctgaaaagccacaacttatttttgtcgtgcagaacttgagagaaatttctactggtttgaaacaagaggttaaaatctccgaggtggaaaagtctcttgggaaatcttctagaaagactcctcgaaaatctcgtgatggagcttcttgttctaaggccagcagggctcgtcccacagatgaacgtggtgggcacaaaagagttaggcttgaaaaggtagttgaagagactgtcgttatcccagtgaaatcttcttcaaatggtgagcgtgagttggatgttcacagtcctttgagagcggaagctccaaatcaggtcatcgagaatgaagcggttatgccaaccatttgtttgagtgaagcttcttcaaaccaggctctgtcaccattgtcaaatctggagaactccatatctaatttgcttggttcagaactgtcgtccttcaagaagaattacctcattgctcaggttgtagacatttatgctaaagtttcttcatctttgacgccaaaggagctgttagtccatgttttggacatcagatcaagtcttgacatgcttcgccctgcaattaagcctctaaaagctggaaagttgcaacttgaagcgttcgtaactgctattgagaagatgctagaggtggcggaccagtcgttagatactactaaggtgcttgagcagaaaactaccatggatgttgaacttgaggagtgtaataaatccaagggaagtttagagtctcaacttgtgggatcttccaaagaacttgaagccttgaaagccacggaatctgatatcatagcagatgagcagcgtgttcagaagaggcgatcagaatataatgctaagagacaatttcttgaagacactctgcaggaactgaaggattccttgaaagagcatgatgaaagaggccagaagcttcaagaagacagagctgcttatatggcggagaaacttcctgagattgagcaggtgttaacgttagtgatccgtgggatctctagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

901

Amino Acids

102.11

Weight (kDa)

8.09

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AarI CACCTGC 2 cut(s) 1608, 2659
Acc16I TGCGCA 1 cut(s) 730
Acc36I ACCTGC 4 cut(s) 906, 1190, 1608, 2659
AccB7I CCANNNNNTGG 1 cut(s) 2227
AccBSI CCGCTC 1 cut(s) 1994
AccI GTMKAC 2 cut(s) 753, 2169
AciI CCGC 4 cut(s) 1994, 2027, 2339, 2645
AclI AACGTT 1 cut(s) 2678
AclWI GGATC 6 cut(s) 176, 776, 1524, 2455, 2680, 2702
AcoI YGGCCR 3 cut(s) 758, 1188, 1390
AcsI RAATTY 6 cut(s) 160, 428, 641, 823, 1163, 1740
AcuI CTGAAG 2 cut(s) 353, 2597
AcyI GRCGYC 1 cut(s) 2201
AfaI GTAC 5 cut(s) 1017, 1031, 1603, 1613, 1639
AfiI CCNNNNNNNGG 4 cut(s) 623, 691, 1649, 2227
AflIII ACRYGT 1 cut(s) 246
AjnI CCWGG 5 cut(s) 46, 137, 1069, 1190, 2067
AjuI GAANNNNNNNTTGG 2 cut(s) 1776, 1808
Alw21I GWGCWC 2 cut(s) 232, 705
Alw26I GTCTC 7 cut(s) 113, 431, 950, 1794, 1916, 2439, 2539
AlwI GGATC 6 cut(s) 176, 776, 1524, 2455, 2680, 2702
AlwNI CAGNNNCTG 3 cut(s) 473, 2074, 2575
AoxI GGCC 8 cut(s) 131, 536, 758, 969, 1188, 1390, 1851, 2608
ApeKI GCWGC 5 cut(s) 731, 890, 1498, 2506, 2633
ApoI RAATTY 6 cut(s) 160, 428, 641, 823, 1163, 1740
ArsI GACNNNNNNTTYG 2 cut(s) 186, 218
Asp700I GAANNNNTTC 2 cut(s) 645, 1128
AspLEI GCGC 3 cut(s) 731, 1009, 1692
AspS9I GGNCC 6 cut(s) 536, 1067, 1251, 1300, 1348, 2341
AsuHPI GGTGA 9 cut(s) 161, 290, 365, 548, 679, 824, 1055, 1970, 2070
AvaII GGWCC 5 cut(s) 1067, 1251, 1300, 1348, 2341
BaeGI GKGCMC 2 cut(s) 1531, 1890
BalI TGGCCA 3 cut(s) 760, 1190, 1392
BanII GRGCYC 4 cut(s) 37, 705, 1413, 1864
BauI CACGAG 1 cut(s) 1827
BbsI GAAGAC 5 cut(s) 201, 363, 889, 2565, 2631
Bbv12I GWGCWC 2 cut(s) 232, 705
BbvCI CCTCAGC 1 cut(s) 1523
BbvI GCAGC 5 cut(s) 743, 877, 1510, 2518, 2620
BccI CCATC 4 cut(s) 560, 973, 1042, 1826
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 5 cut(s) 48, 139, 1071, 1192, 2069
BciVI GTATCC 1 cut(s) 1188
BclI TGATCA 1 cut(s) 1450
BcoDI GTCTC 7 cut(s) 113, 431, 950, 1794, 1916, 2439, 2539
BfaI CTAG 6 cut(s) 314, 401, 1019, 1806, 2330, 2700
BfmI CTRYAG 4 cut(s) 1284, 1368, 1615, 2567
BfoI RGCGCY 1 cut(s) 1693
BfuAI ACCTGC 4 cut(s) 906, 1190, 1608, 2659
BfuI GTATCC 1 cut(s) 1188
BglI GCCNNNNNGGC 1 cut(s) 1859
BglII AGATCT 2 cut(s) 55, 661
BisI GCNGC 5 cut(s) 732, 891, 1499, 2507, 2634
BlpI GCTNAGC 1 cut(s) 911
BlsI GCNGC 5 cut(s) 733, 892, 1500, 2508, 2635
BmcAI AGTACT 1 cut(s) 1017
Bme1390I CCNGG 5 cut(s) 48, 139, 1071, 1192, 2069
Bme18I GGWCC 5 cut(s) 1067, 1251, 1300, 1348, 2341
BmgT120I GGNCC 6 cut(s) 536, 1067, 1251, 1300, 1348, 2341
BmiI GGNNCC 3 cut(s) 537, 805, 834
BmrFI CCNGG 5 cut(s) 48, 139, 1071, 1192, 2069
BmrI ACTGGG 3 cut(s) 287, 358, 1931
BmsI GCATC 5 cut(s) 229, 588, 999, 1279, 2316
BmuI ACTGGG 3 cut(s) 287, 358, 1931
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 5 cut(s) 201, 363, 889, 2565, 2631
BpmI CTGGAG 1 cut(s) 2114
Bpu10I CCTNAGC 2 cut(s) 1523, 2160
Bpu1102I GCTNAGC 1 cut(s) 911
BpuEI CTTGAG 7 cut(s) 143, 727, 878, 1427, 1753, 2390, 2420
BsaHI GRCGYC 1 cut(s) 2201
BsaJI CCNNGG 9 cut(s) 47, 138, 761, 1033, 1776, 2385, 2418, 2478, 2689
Bsc4I CCNNNNNNNGG 4 cut(s) 623, 691, 1649, 2227
Bse118I RCCGGY 2 cut(s) 616, 1064
Bse1I ACTGG 7 cut(s) 293, 353, 761, 891, 1753, 1937, 2344
Bse3DI GCAATG 2 cut(s) 1508, 2154
BseBI CCWGG 5 cut(s) 48, 139, 1071, 1192, 2069
BseDI CCNNGG 9 cut(s) 47, 138, 761, 1033, 1776, 2385, 2418, 2478, 2689
BseGI GGATG 3 cut(s) 10, 1978, 2395
BseLI CCNNNNNNNGG 4 cut(s) 623, 691, 1649, 2227
BseMI GCAATG 2 cut(s) 1508, 2154
BseMII CTCAG 5 cut(s) 833, 945, 1514, 2174, 2649
BseNI ACTGG 7 cut(s) 293, 353, 761, 891, 1753, 1937, 2344
BseRI GAGGAG 2 cut(s) 1806, 2417
BseSI GKGCMC 2 cut(s) 1531, 1890
BseXI GCAGC 5 cut(s) 743, 877, 1510, 2518, 2620
BsgI GTGCAG 2 cut(s) 486, 1745
BshFI GGCC 8 cut(s) 133, 538, 760, 971, 1190, 1392, 1853, 2610
BsiHKAI GWGCWC 2 cut(s) 232, 705
BsiSI CCGG 2 cut(s) 617, 1065
BslFI GGGAC 2 cut(s) 103, 1851
BslI CCNNNNNNNGG 4 cut(s) 623, 691, 1649, 2227
BsmAI GTCTC 7 cut(s) 113, 431, 950, 1794, 1916, 2439, 2539
BsmFI GGGAC 2 cut(s) 103, 1851
BsmI GAATGC 5 cut(s) 333, 396, 518, 893, 902
BsnI GGCC 8 cut(s) 133, 538, 760, 971, 1190, 1392, 1853, 2610
Bsp1286I GDGCHC 7 cut(s) 37, 232, 705, 1413, 1531, 1864, 1890
Bsp1407I TGTACA 1 cut(s) 1601
Bsp1720I GCTNAGC 1 cut(s) 911
Bsp19I CCATGG 3 cut(s) 761, 1033, 2385
BspACI CCGC 4 cut(s) 1994, 2027, 2339, 2645
BspANI GGCC 8 cut(s) 133, 538, 760, 971, 1190, 1392, 1853, 2610
BspCNI CTCAG 5 cut(s) 834, 946, 1515, 2173, 2650
BspHI TCATGA 1 cut(s) 1674
BspLI GGNNCC 3 cut(s) 537, 805, 834
BspMAI CTGCAG 3 cut(s) 1372, 1619, 2571
BspMI ACCTGC 4 cut(s) 906, 1190, 1608, 2659
BspPI GGATC 6 cut(s) 176, 776, 1524, 2455, 2680, 2702
BspQI GCTCTTC 2 cut(s) 1081, 1588
BsrBI CCGCTC 1 cut(s) 1994
BsrDI GCAATG 2 cut(s) 1508, 2154
BsrFI RCCGGY 2 cut(s) 616, 1064
BsrGI TGTACA 1 cut(s) 1601
BsrI ACTGG 7 cut(s) 293, 353, 761, 891, 1753, 1937, 2344
BssAI RCCGGY 2 cut(s) 616, 1064
BssECI CCNNGG 9 cut(s) 47, 138, 761, 1033, 1776, 2385, 2418, 2478, 2689
BssNI GRCGYC 1 cut(s) 2201
BssSI CACGAG 1 cut(s) 1827
BssT1I CCWWGG 4 cut(s) 761, 1033, 2385, 2418
Bst2BI CACGAG 1 cut(s) 1827
Bst2UI CCWGG 5 cut(s) 48, 139, 1071, 1192, 2069
Bst6I CTCTTC 6 cut(s) 264, 429, 1081, 1588, 1914, 2513
BstACI GRCGYC 1 cut(s) 2201
BstAUI TGTACA 1 cut(s) 1601
BstC8I GCNNGC 2 cut(s) 1115, 1855
BstDSI CCRYGG 5 cut(s) 761, 1033, 2385, 2478, 2689
BstEII GGTNACC 2 cut(s) 142, 167
BstF5I GGATG 3 cut(s) 10, 1978, 2395
BstH2I RGCGCY 1 cut(s) 1693
BstHHI GCGC 3 cut(s) 731, 1009, 1692
BstMAI GTCTC 7 cut(s) 113, 431, 950, 1794, 1916, 2439, 2539
BstMWI GCNNNNNNNGC 8 cut(s) 535, 899, 1196, 1381, 1859, 2209, 2474, 2642
BstNI CCWGG 5 cut(s) 48, 139, 1071, 1192, 2069
BstNSI RCATGY 1 cut(s) 2254
BstPAI GACNNNNGTC 1 cut(s) 66
BstPI GGTNACC 2 cut(s) 142, 167
BstSCI CCNGG 5 cut(s) 46, 137, 1069, 1190, 2067
BstSFI CTRYAG 4 cut(s) 1284, 1368, 1615, 2567
BstSLI GKGCMC 2 cut(s) 1531, 1890
BstV1I GCAGC 5 cut(s) 743, 877, 1510, 2518, 2620
BstV2I GAAGAC 5 cut(s) 201, 363, 889, 2565, 2631
BstX2I RGATCY 5 cut(s) 55, 661, 1516, 2447, 2694
BstXI CCANNNNNNTGG 2 cut(s) 566, 1040
BstYI RGATCY 5 cut(s) 55, 661, 1516, 2447, 2694
BsuI GTATCC 1 cut(s) 1188
BsuRI GGCC 8 cut(s) 133, 538, 760, 971, 1190, 1392, 1853, 2610
BtgI CCRYGG 5 cut(s) 761, 1033, 2385, 2478, 2689
BtgZI GCGATG 1 cut(s) 1256
BtsCI GGATG 3 cut(s) 10, 1978, 2395
BtsI GCAGTG 2 cut(s) 147, 1377
BtsIMutI CAGTG 5 cut(s) 147, 1377, 1604, 1665, 1944
BveI ACCTGC 4 cut(s) 906, 1190, 1608, 2659
Cac8I GCNNGC 2 cut(s) 1115, 1855
CaiI CAGNNNCTG 3 cut(s) 473, 2074, 2575
CciI TCATGA 1 cut(s) 1674
CfoI GCGC 3 cut(s) 731, 1009, 1692
Cfr10I RCCGGY 2 cut(s) 616, 1064
Cfr13I GGNCC 6 cut(s) 536, 1067, 1251, 1300, 1348, 2341
CseI GACGC 1 cut(s) 2209
Csp6I GTAC 5 cut(s) 1016, 1030, 1602, 1612, 1638
CviQI GTAC 5 cut(s) 1016, 1030, 1602, 1612, 1638
EaeI YGGCCR 3 cut(s) 758, 1188, 1390
Eam1104I CTCTTC 6 cut(s) 264, 429, 1081, 1588, 1914, 2513
EarI CTCTTC 6 cut(s) 264, 429, 1081, 1588, 1914, 2513
EciI GGCGGA 2 cut(s) 2354, 2660
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 4 cut(s) 761, 1033, 2385, 2418
Eco147I AGGCCT 1 cut(s) 133
Eco24I GRGCYC 4 cut(s) 37, 705, 1413, 1864
Eco32I GATATC 1 cut(s) 2491
Eco47I GGWCC 5 cut(s) 1067, 1251, 1300, 1348, 2341
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 2 cut(s) 353, 2597
Eco91I GGTNACC 2 cut(s) 142, 167
EcoICRI GAGCTC 1 cut(s) 703
EcoO109I RGGNCCY 2 cut(s) 536, 1348
EcoO65I GGTNACC 2 cut(s) 142, 167
EcoRI GAATTC 4 cut(s) 160, 641, 823, 1163
EcoRII CCWGG 5 cut(s) 46, 137, 1069, 1190, 2067
EcoRV GATATC 1 cut(s) 2491
EcoT14I CCWWGG 4 cut(s) 761, 1033, 2385, 2418
EcoT38I GRGCYC 4 cut(s) 37, 705, 1413, 1864
ErhI CCWWGG 4 cut(s) 761, 1033, 2385, 2418
FalI AAGNNNNNCTT 3 cut(s) 35, 2570, 2602
FaqI GGGAC 2 cut(s) 103, 1851
FbaI TGATCA 1 cut(s) 1450
FblI GTMKAC 2 cut(s) 753, 2169
Fnu4HI GCNGC 5 cut(s) 732, 891, 1499, 2507, 2634
FokI GGATG 3 cut(s) 17, 1985, 2402
FriOI GRGCYC 4 cut(s) 37, 705, 1413, 1864
Fsp4HI GCNGC 5 cut(s) 732, 891, 1499, 2507, 2634
FspBI CTAG 6 cut(s) 314, 401, 1019, 1806, 2330, 2700
FspI TGCGCA 1 cut(s) 730
GlaI GCGC 3 cut(s) 730, 1008, 1691
GluI GCNGC 5 cut(s) 732, 891, 1499, 2507, 2634
GsuI CTGGAG 1 cut(s) 2114
HaeII RGCGCY 1 cut(s) 1693
HaeIII GGCC 8 cut(s) 133, 538, 760, 971, 1190, 1392, 1853, 2610
HapII CCGG 2 cut(s) 617, 1065
HgaI GACGC 1 cut(s) 2209
HhaI GCGC 3 cut(s) 731, 1009, 1692
Hin1I GRCGYC 1 cut(s) 2201
Hin6I GCGC 3 cut(s) 729, 1007, 1690
HinP1I GCGC 3 cut(s) 729, 1007, 1690
HincII GTYRAC 1 cut(s) 2676
HindII GTYRAC 1 cut(s) 2676
HindIII AAGCTT 3 cut(s) 854, 2055, 2615
HinfI GANTC 7 cut(s) 177, 1216, 1396, 1813, 2432, 2483, 2582
HpaI GTTAAC 1 cut(s) 2676
HpaII CCGG 2 cut(s) 617, 1065
HphI GGTGA 9 cut(s) 161, 290, 365, 548, 679, 824, 1055, 1970, 2070
Hpy166II GTNNAC 6 cut(s) 754, 1030, 1602, 1978, 2170, 2676
Hpy8I GTNNAC 6 cut(s) 754, 1030, 1602, 1978, 2170, 2676
HpyAV CCTTC 8 cut(s) 250, 329, 664, 872, 939, 1681, 2146, 2572
HpyCH4IV ACGT 4 cut(s) 248, 1104, 1879, 2678
HpyF10VI GCNNNNNNNGC 8 cut(s) 535, 899, 1196, 1381, 1859, 2209, 2474, 2642
HpySE526I ACGT 4 cut(s) 248, 1104, 1879, 2678
Hsp92I GRCGYC 1 cut(s) 2201
HspAI GCGC 3 cut(s) 729, 1007, 1690
Ksp22I TGATCA 1 cut(s) 1450
KspAI GTTAAC 1 cut(s) 2676
LguI GCTCTTC 2 cut(s) 1081, 1588
LmnI GCTCC 5 cut(s) 29, 803, 1835, 2005, 2209
Lsp1109I GCAGC 5 cut(s) 743, 877, 1510, 2518, 2620
LweI GCATC 5 cut(s) 229, 588, 999, 1279, 2316
MaeI CTAG 6 cut(s) 314, 401, 1019, 1806, 2330, 2700
MaeII ACGT 4 cut(s) 248, 1104, 1879, 2678
MaeIII GTNAC 6 cut(s) 87, 142, 167, 278, 2076, 2308
MbiI CCGCTC 1 cut(s) 1994
MflI RGATCY 5 cut(s) 55, 661, 1516, 2447, 2694
MhlI GDGCHC 7 cut(s) 37, 232, 705, 1413, 1531, 1864, 1890
MlsI TGGCCA 3 cut(s) 760, 1190, 1392
MluNI TGGCCA 3 cut(s) 760, 1190, 1392
MlyI GAGTC 4 cut(s) 1225, 1405, 1807, 2441
MmeI TCCRAC 4 cut(s) 277, 957, 1104, 1950
Mox20I TGGCCA 3 cut(s) 760, 1190, 1392
MroXI GAANNNNTTC 2 cut(s) 645, 1128
MscI TGGCCA 3 cut(s) 760, 1190, 1392
MseI TTAA 4 cut(s) 542, 1767, 2268, 2675
MslI CAYNNNNRTG 4 cut(s) 237, 251, 564, 1358
Msp20I TGGCCA 3 cut(s) 760, 1190, 1392
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 2 cut(s) 617, 1065
MspR9I CCNGG 5 cut(s) 48, 139, 1071, 1192, 2069
Mva1269I GAATGC 5 cut(s) 333, 396, 518, 893, 902
MvaI CCWGG 5 cut(s) 48, 139, 1071, 1192, 2069
MwoI GCNNNNNNNGC 8 cut(s) 535, 899, 1196, 1381, 1859, 2209, 2474, 2642
NcoI CCATGG 3 cut(s) 761, 1033, 2385
NlaIV GGNNCC 3 cut(s) 537, 805, 834
NmuCI GTSAC 3 cut(s) 167, 278, 2076
NsbI TGCGCA 1 cut(s) 730
NspI RCATGY 1 cut(s) 2254
PagI TCATGA 1 cut(s) 1674
PaqCI CACCTGC 2 cut(s) 1608, 2659
PceI AGGCCT 1 cut(s) 133
PciSI GCTCTTC 2 cut(s) 1081, 1588
PcsI WCGNNNNNNNCGW 2 cut(s) 1585, 1825
PctI GAATGC 5 cut(s) 333, 396, 518, 893, 902
PdmI GAANNNNTTC 2 cut(s) 645, 1128
PfeI GAWTC 3 cut(s) 177, 2483, 2582
PflFI GACNNNGTC 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 2227
PkrI GCNGC 5 cut(s) 733, 892, 1500, 2508, 2635
PleI GAGTC 4 cut(s) 1224, 1404, 1807, 2440
PpsI GAGTC 4 cut(s) 1224, 1404, 1807, 2440
PpuMI RGGWCCY 1 cut(s) 1348
PshAI GACNNNNGTC 1 cut(s) 66
PsiI TTATAA 1 cut(s) 738
Psp124BI GAGCTC 1 cut(s) 705
Psp1406I AACGTT 1 cut(s) 2678
Psp5II RGGWCCY 1 cut(s) 1348
Psp6I CCWGG 5 cut(s) 46, 137, 1069, 1190, 2067
PspEI GGTNACC 2 cut(s) 142, 167
PspGI CCWGG 5 cut(s) 46, 137, 1069, 1190, 2067
PspN4I GGNNCC 3 cut(s) 537, 805, 834
PspPI GGNCC 6 cut(s) 536, 1067, 1251, 1300, 1348, 2341
PspPPI RGGWCCY 1 cut(s) 1348
PstI CTGCAG 3 cut(s) 1372, 1619, 2571
PstNI CAGNNNCTG 3 cut(s) 473, 2074, 2575
PsuI RGATCY 5 cut(s) 55, 661, 1516, 2447, 2694
PsyI GACNNNGTC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 5 cut(s) 1017, 1031, 1603, 1613, 1639
RsaNI GTAC 5 cut(s) 1016, 1030, 1602, 1612, 1638
RseI CAYNNNNRTG 4 cut(s) 237, 251, 564, 1358
SacI GAGCTC 1 cut(s) 705
SapI GCTCTTC 2 cut(s) 1081, 1588
SaqAI TTAA 4 cut(s) 542, 1767, 2268, 2675
SatI GCNGC 5 cut(s) 732, 891, 1499, 2507, 2634
Sau96I GGNCC 6 cut(s) 536, 1067, 1251, 1300, 1348, 2341
ScaI AGTACT 1 cut(s) 1017
SchI GAGTC 4 cut(s) 1225, 1405, 1807, 2441
ScrFI CCNGG 5 cut(s) 48, 139, 1071, 1192, 2069
SduI GDGCHC 7 cut(s) 37, 232, 705, 1413, 1531, 1864, 1890
SfaNI GCATC 5 cut(s) 229, 588, 999, 1279, 2316
SfcI CTRYAG 4 cut(s) 1284, 1368, 1615, 2567
SinI GGWCC 5 cut(s) 1067, 1251, 1300, 1348, 2341
SmiMI CAYNNNNRTG 4 cut(s) 237, 251, 564, 1358
SmlI CTYRAG 8 cut(s) 9, 122, 706, 857, 1406, 1732, 2369, 2399
SmoI CTYRAG 8 cut(s) 9, 122, 706, 857, 1406, 1732, 2369, 2399
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 4 cut(s) 1994, 2027, 2339, 2645
SspI AATATT 1 cut(s) 1127
SspMI CTAG 6 cut(s) 314, 401, 1019, 1806, 2330, 2700
SstI GAGCTC 1 cut(s) 705
StuI AGGCCT 1 cut(s) 133
StyD4I CCNGG 5 cut(s) 46, 137, 1069, 1190, 2067
StyI CCWWGG 4 cut(s) 761, 1033, 2385, 2418
TaiI ACGT 4 cut(s) 251, 1107, 1882, 2681
TaqI TCGA 5 cut(s) 101, 180, 771, 1819, 2016
TatI WGTACW 3 cut(s) 1015, 1601, 1637
TfiI GAWTC 3 cut(s) 177, 2483, 2582
Tru1I TTAA 4 cut(s) 542, 1767, 2268, 2675
Tru9I TTAA 4 cut(s) 542, 1767, 2268, 2675
TscAI CASTG 5 cut(s) 154, 1377, 1604, 1665, 1944
TseFI GTSAC 3 cut(s) 167, 278, 2076
TseI GCWGC 5 cut(s) 731, 890, 1498, 2506, 2633
Tsp45I GTSAC 3 cut(s) 167, 278, 2076
TspGWI ACGGA 5 cut(s) 425, 477, 816, 2495, 2678
TspRI CASTG 5 cut(s) 154, 1377, 1604, 1665, 1944
Tth111I GACNNNGTC 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 2227
VpaK11BI GGWCC 5 cut(s) 1067, 1251, 1300, 1348, 2341
XapI RAATTY 6 cut(s) 160, 428, 641, 823, 1163, 1740
XbaI TCTAGA 2 cut(s) 400, 1805
XceI RCATGY 1 cut(s) 2254
XcmI CCANNNNNNNNNTGG 1 cut(s) 1106
XmiI GTMKAC 2 cut(s) 753, 2169
XmnI GAANNNNTTC 2 cut(s) 645, 1128
XspI CTAG 6 cut(s) 314, 401, 1019, 1806, 2330, 2700
ZrmI AGTACT 1 cut(s) 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.