Rh2DG323900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000253
Physical Location & Seq
Reverse (-)
40671973 .. 40672491
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG323900.1

Sequence Viewer

Length: 519 bp
ATGCTTCACCCTGCAATTAAGCCTCTGAAAGCTGGAAAGCCACAACTTGAAGCGTTCGTAACTGCTATTGAGAAGATGTTAGAGGTGGCGGACCAGTCGTTAGCTACTACTGGGGTCCTTGAGCAGATAACTACCGTGGATGTTGAACTTGAGGAGTGTCAGAAATCCAAGGGAAGTTTAGAATCTCAGCTTGTGGGATCTTCCAAAGAGCTTGAAGCCTTGAAAGCTACGGAATCTGACATCATAGCAGATGAGCAGCGAGTTCAGAAGAGGCGATCAGAATACGATGCTAAGAGACAATCTCTTGAAGACACTCTGCAGGAACTGAAGGATTCCTTGAAAGAGCATGATGAAAGAGGCCAGAAGCTTCAAGAAGACAGAGCTGCTTATATGGCGGAGAAACTCTCGGAGATTGAGCAGGCTACGGCTTCGTATAAGTTGGAAACAGAGGCATATCAGAGCCTGTTTGATTCTCTGCTCCCGTTATTCCATGTGTGCACCACCCCAGTACAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.3

Weight (kDa)

4.76

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 89, 395
AclWI GGATC 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 1 cut(s) 510
AgsI TTSAA 7 cut(s) 50, 146, 215, 223, 308, 340, 371
AluBI AGCT 7 cut(s) 32, 104, 190, 211, 227, 367, 383
AluI AGCT 7 cut(s) 32, 104, 190, 211, 227, 367, 383
Alw21I GWGCWC 1 cut(s) 500
Alw26I GTCTC 1 cut(s) 289
Alw44I GTGCAC 1 cut(s) 496
AlwI GGATC 1 cut(s) 205
AlwNI CAGNNNCTG 2 cut(s) 325, 463
AoxI GGCC 1 cut(s) 358
ApaLI GTGCAC 1 cut(s) 496
ApeKI GCWGC 2 cut(s) 256, 383
AspS9I GGNCC 2 cut(s) 91, 115
AvaII GGWCC 2 cut(s) 91, 115
BaeGI GKGCMC 1 cut(s) 500
BbsI GAAGAC 2 cut(s) 315, 381
Bbv12I GWGCWC 1 cut(s) 500
BbvI GCAGC 2 cut(s) 268, 370
BceAI ACGGC 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 289
BfmI CTRYAG 1 cut(s) 317
BisI GCNGC 2 cut(s) 257, 384
BlsI GCNGC 2 cut(s) 258, 385
Bme18I GGWCC 2 cut(s) 91, 115
BmgT120I GGNCC 2 cut(s) 91, 115
BmiI GGNNCC 1 cut(s) 116
BmrI ACTGGG 2 cut(s) 120, 500
BmsI GCATC 1 cut(s) 277
BmuI ACTGGG 2 cut(s) 120, 500
BpiI GAAGAC 2 cut(s) 315, 381
BplI GAGNNNNNCTC 4 cut(s) 286, 318, 389, 421
BpuEI CTTGAG 2 cut(s) 140, 170
BsaJI CCNNGG 2 cut(s) 135, 168
Bse1I ACTGG 3 cut(s) 94, 115, 506
BseDI CCNNGG 2 cut(s) 135, 168
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 94, 115, 506
BseRI GAGGAG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 500
BseXI GCAGC 2 cut(s) 268, 370
BshFI GGCC 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 500
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 500
Bsp143I GATC 2 cut(s) 197, 275
BspACI CCGC 2 cut(s) 89, 395
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 116
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 1 cut(s) 205
BsrI ACTGG 3 cut(s) 94, 115, 506
BssECI CCNNGG 2 cut(s) 135, 168
BssMI GATC 2 cut(s) 197, 275
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 2 cut(s) 186, 291
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 2 cut(s) 200, 278
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 2 cut(s) 197, 275
BstMWI GCNNNNNNNGC 2 cut(s) 224, 392
BstSFI CTRYAG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 268, 370
BstV2I GAAGAC 2 cut(s) 315, 381
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 2 cut(s) 325, 463
Cfr13I GGNCC 2 cut(s) 91, 115
Csp6I GTAC 1 cut(s) 509
CviAII CATG 2 cut(s) 347, 491
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 2 cut(s) 186, 291
DpnI GATC 2 cut(s) 199, 277
DpnII GATC 2 cut(s) 197, 275
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 2 cut(s) 104, 410
Eco130I CCWWGG 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 91, 115
Eco57I CTGAAG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 350, 494
FaiI YATR 7 cut(s) 245, 348, 390, 392, 435, 454, 492
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 2 cut(s) 346, 490
Fnu4HI GCNGC 2 cut(s) 257, 384
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 257, 384
GluI GCNGC 2 cut(s) 257, 384
HaeIII GGCC 1 cut(s) 360
Hin1II CATG 2 cut(s) 350, 494
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 4 cut(s) 182, 233, 332, 470
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 7 cut(s) 27, 162, 238, 267, 280, 409, 459
Hpy188III TCNNGA 2 cut(s) 305, 371
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 14, 319, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 392
HpyF3I CTNAG 2 cut(s) 186, 291
Hsp92II CATG 2 cut(s) 350, 494
Kzo9I GATC 2 cut(s) 197, 275
LmnI GCTCC 1 cut(s) 483
LpnPI CCDG 8 cut(s) 18, 24, 96, 107, 305, 374, 404, 476
Lsp1109I GCAGC 2 cut(s) 268, 370
LweI GCATC 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 199, 277
MboI GATC 2 cut(s) 197, 275
MboII GAAGA 5 cut(s) 85, 192, 280, 320, 386
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 500
MluCI AATT 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 6 cut(s) 33, 76, 145, 264, 350, 442
MseI TTAA 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 224, 392
NdeII GATC 2 cut(s) 197, 275
NlaIII CATG 2 cut(s) 350, 494
NlaIV GGNNCC 1 cut(s) 116
PfeI GAWTC 4 cut(s) 182, 233, 332, 470
PkrI GCNGC 2 cut(s) 258, 385
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 2 cut(s) 91, 115
PspPPI RGGWCCY 1 cut(s) 115
PstI CTGCAG 1 cut(s) 321
PstNI CAGNNNCTG 2 cut(s) 325, 463
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 257, 384
Sau3AI GATC 2 cut(s) 197, 275
Sau96I GGNCC 2 cut(s) 91, 115
SduI GDGCHC 1 cut(s) 500
SetI ASST 8 cut(s) 34, 87, 106, 192, 213, 229, 369, 385
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 317
SinI GGWCC 2 cut(s) 91, 115
SmlI CTYRAG 2 cut(s) 119, 149
SmoI CTYRAG 2 cut(s) 119, 149
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 89, 395
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 136
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 4 cut(s) 182, 233, 332, 470
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseI GCWGC 2 cut(s) 256, 383
TspDTI ATGAA 1 cut(s) 366
TspGWI ACGGA 1 cut(s) 245
VneI GTGCAC 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 91, 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.