Rw7G019590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000253
Physical Location & Seq
Forward (+)
21771713 .. 21781948
10236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019590.1

Sequence Viewer

Length: 1329 bp
ATGCTGATCTCCAAGTACTTGTCAATATCTATAAATGATGATATTAAACATAGGAATGGCTCGAAGGGTCTGTATAAGGTGCGCTTGAACACTTTCATAAGCAATGGATACCAAGGATTTAGGATTATGAGTACAGAAAAGGCGATCCAGAAGACAGAAGAGGGTGACAAGATTGAGGCCAACAAAAAGATACAGAAAGAACCTGAGAAATCCCCAACTCGCAGATGGAGTTCTTGGGCCGTGAAACGAAGTTTGAAAGAGAATCATAAAATTAGTGAAAGCACGAATTTGGAGGCTCACACAAAGCTGCCCTCTGACAAGGATGCAGATAGAGATTACAAAAAAATTCGTTATGAAGAGTACACCAACCTTGGACATGATATGGATGATAACCTTAGAGGCGATGGTCACCTTTCTCCAAGGGATGATGGTGTTGCCTTCCATATTAGTGATGGAATCATTATCCCGAAGCTGAAATCAGTAATAGTACGAGCTCCAGCGTCGAATGATCCAGATCATGAGCCCCATCCAAATGACTTGGAGGCAAGACCAAGGGAATCAGTGGCAAAAGAATGCGATATAGAGCCATTATCGGAGGCTCCAATTCCAGAGACAAAGGTTTCTGAACAACAACCTGAGCCTAAATTAAGGGACTTCAATATCCAAATTGAAGACACCCGTGACTCTACTAGTGGGGCCACTAAACCTATCAATTCTAATGCCTCCGAGCATATTGATGAAGATATTAGCTTACCCACTGAGGCTACATCGACTCTGCATGAAATTTTGGATGAAGTTTCAAAAACACTTGATGTGTTGGAGCTAATGTTCAAAACCCTCAGCTCTGGTAAGGACAAGTTTGAGTGGTTTGCTGCAAAAGTTTATCTAACCTTTGACTTGGCAGCTCAGCTTTCTCAAGACAAGAGCATTATTGAGAAAGATTACGGCTTGGACATTGAGCGCATCAATGAGTTAATTCAAAACCATAAAAAGTATCAAGCTGCCAAGAAGGTCCTTGATTCGAAATTATTGAGCCTTAATCAGGAACTTGAATGTTTAAAGGCCATCGAACGAAGTATTATTGAGGTAGAAGAGGATTATGAGATTGCAAAAAGTCACCTTGAAAAGAAAATAAGCTGGTCTGAGGCTTCTCTTGAGCGTCAAAACAAGCTGGATGAAGAGCTTCATCTGGCAAGGATTGAGGCTCGAGAGGATAAACTTGCAGAATTTAAAAATGTCAAGAGCTCATTTAAAGTTCGGCAAGAGGAGCTTGAGAAGCTAATAGACAATTTGAAGTCGTTTGTCCAACAGCTTAAACAGAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

442

Amino Acids

50.73

Weight (kDa)

5.56

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 139, 503
AcsI RAATTY 4 cut(s) 286, 345, 783, 1226
AfaI GTAC 4 cut(s) 17, 133, 362, 489
AfiI CCNNNNNNNGG 1 cut(s) 1042
AhlI ACTAGT 1 cut(s) 689
AloI GAACNNNNNNTCC 2 cut(s) 812, 844
Alw21I GWGCWC 2 cut(s) 496, 1247
Alw26I GTCTC 1 cut(s) 605
AlwI GGATC 2 cut(s) 139, 503
Ama87I CYCGRG 1 cut(s) 1206
AoxI GGCC 4 cut(s) 177, 237, 696, 1062
ApeKI GCWGC 4 cut(s) 307, 872, 902, 1001
ApoI RAATTY 4 cut(s) 286, 345, 783, 1226
Asp700I GAANNNNTTC 2 cut(s) 92, 1182
AspLEI GCGC 2 cut(s) 84, 963
AspS9I GGNCC 3 cut(s) 237, 696, 1012
AsuHPI GGTGA 3 cut(s) 176, 401, 1109
AsuII TTCGAA 1 cut(s) 1022
AvaI CYCGRG 1 cut(s) 1206
AvaII GGWCC 1 cut(s) 1012
BanII GRGCYC 3 cut(s) 496, 525, 1247
BbsI GAAGAC 2 cut(s) 158, 678
Bbv12I GWGCWC 2 cut(s) 496, 1247
BbvCI CCTCAGC 1 cut(s) 839
BbvI GCAGC 4 cut(s) 294, 859, 914, 988
BccI CCATC 6 cut(s) 219, 398, 422, 446, 534, 1073
BceAI ACGGC 2 cut(s) 224, 961
BciVI GTATCC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 605
BcuI ACTAGT 1 cut(s) 689
BfaI CTAG 2 cut(s) 690, 1327
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 4 cut(s) 308, 873, 903, 1002
BlpI GCTNAGC 1 cut(s) 906
BlsI GCNGC 4 cut(s) 309, 874, 904, 1003
BmcAI AGTACT 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 1012
BmeT110I CYCGRG 1 cut(s) 1206
BmgT120I GGNCC 3 cut(s) 237, 696, 1012
BmiI GGNNCC 2 cut(s) 600, 697
BmsI GCATC 2 cut(s) 313, 972
BpiI GAAGAC 2 cut(s) 158, 678
BpmI CTGGAG 1 cut(s) 480
Bpu10I CCTNAGC 2 cut(s) 636, 839
Bpu1102I GCTNAGC 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 1022
BpuEI CTTGAG 3 cut(s) 900, 1175, 1292
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 4 cut(s) 112, 370, 419, 551
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 1 cut(s) 1042
Bse3DI GCAATG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 513
BseDI CCNNGG 4 cut(s) 112, 370, 419, 551
BseGI GGATG 6 cut(s) 328, 391, 430, 526, 796, 1180
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 1 cut(s) 1042
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 6 cut(s) 195, 627, 750, 853, 920, 1134
BseRI GAGGAG 1 cut(s) 1280
BseXI GCAGC 4 cut(s) 294, 859, 914, 988
BshFI GGCC 4 cut(s) 179, 239, 698, 1064
BsiHKAI GWGCWC 2 cut(s) 496, 1247
BsiHKCI CYCGRG 1 cut(s) 1206
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 1 cut(s) 1042
BsmAI GTCTC 1 cut(s) 605
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 4 cut(s) 179, 239, 698, 1064
BsoBI CYCGRG 1 cut(s) 1206
Bsp119I TTCGAA 1 cut(s) 1022
Bsp1286I GDGCHC 3 cut(s) 496, 525, 1247
Bsp143I GATC 4 cut(s) 6, 144, 508, 514
Bsp1720I GCTNAGC 1 cut(s) 906
BspANI GGCC 4 cut(s) 179, 239, 698, 1064
BspCNI CTCAG 6 cut(s) 196, 628, 751, 852, 919, 1135
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 2 cut(s) 600, 697
BspPI GGATC 2 cut(s) 139, 503
BspQI GCTCTTC 1 cut(s) 1173
BspT104I TTCGAA 1 cut(s) 1022
BsrDI GCAATG 1 cut(s) 109
BssECI CCNNGG 4 cut(s) 112, 370, 419, 551
BssMI GATC 4 cut(s) 6, 144, 508, 514
BssT1I CCWWGG 4 cut(s) 112, 370, 419, 551
Bst6I CTCTTC 4 cut(s) 153, 351, 1086, 1173
BstBI TTCGAA 1 cut(s) 1022
BstDEI CTNAG 7 cut(s) 204, 395, 636, 759, 839, 906, 1143
BstEII GGTNACC 1 cut(s) 407
BstENI CCTNNNNNAGG 1 cut(s) 1040
BstF5I GGATG 6 cut(s) 328, 391, 430, 526, 796, 1180
BstHHI GCGC 2 cut(s) 84, 963
BstKTI GATC 4 cut(s) 9, 147, 511, 517
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 4 cut(s) 6, 144, 508, 514
BstMWI GCNNNNNNNGC 2 cut(s) 1267, 1276
BstPI GGTNACC 1 cut(s) 407
BstV1I GCAGC 4 cut(s) 294, 859, 914, 988
BstV2I GAAGAC 2 cut(s) 158, 678
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 4 cut(s) 179, 239, 698, 1064
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 6 cut(s) 328, 391, 430, 526, 796, 1180
BtsIMutI CAGTG 2 cut(s) 567, 756
CciI TCATGA 1 cut(s) 517
CfoI GCGC 2 cut(s) 84, 963
Cfr13I GGNCC 3 cut(s) 237, 696, 1012
CseI GACGC 2 cut(s) 489, 1148
Csp6I GTAC 4 cut(s) 16, 132, 361, 488
CviAII CATG 3 cut(s) 377, 518, 779
CviQI GTAC 4 cut(s) 16, 132, 361, 488
DdeI CTNAG 7 cut(s) 204, 395, 636, 759, 839, 906, 1143
DpnI GATC 4 cut(s) 8, 146, 510, 516
DpnII GATC 4 cut(s) 6, 144, 508, 514
DraI TTTAAA 3 cut(s) 1059, 1231, 1252
Eam1104I CTCTTC 4 cut(s) 153, 351, 1086, 1173
EarI CTCTTC 4 cut(s) 153, 351, 1086, 1173
Ecl136II GAGCTC 2 cut(s) 494, 1245
Eco130I CCWWGG 4 cut(s) 112, 370, 419, 551
Eco24I GRGCYC 3 cut(s) 496, 525, 1247
Eco47I GGWCC 1 cut(s) 1012
Eco53kI GAGCTC 2 cut(s) 494, 1245
Eco88I CYCGRG 1 cut(s) 1206
Eco91I GGTNACC 1 cut(s) 407
EcoICRI GAGCTC 2 cut(s) 494, 1245
EcoNI CCTNNNNNAGG 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 1012
EcoO65I GGTNACC 1 cut(s) 407
EcoT14I CCWWGG 4 cut(s) 112, 370, 419, 551
EcoT38I GRGCYC 3 cut(s) 496, 525, 1247
ErhI CCWWGG 4 cut(s) 112, 370, 419, 551
FaeI CATG 3 cut(s) 380, 521, 782
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 1254, 1286
FaqI GGGAC 1 cut(s) 665
FatI CATG 3 cut(s) 376, 517, 778
Fnu4HI GCNGC 4 cut(s) 308, 873, 903, 1002
FokI GGATG 6 cut(s) 335, 398, 437, 513, 803, 1187
FriOI GRGCYC 3 cut(s) 496, 525, 1247
Fsp4HI GCNGC 4 cut(s) 308, 873, 903, 1002
FspBI CTAG 2 cut(s) 690, 1327
GlaI GCGC 2 cut(s) 83, 962
GluI GCNGC 4 cut(s) 308, 873, 903, 1002
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 4 cut(s) 179, 239, 698, 1064
HgaI GACGC 2 cut(s) 489, 1148
HhaI GCGC 2 cut(s) 84, 963
Hin1II CATG 3 cut(s) 380, 521, 782
Hin6I GCGC 2 cut(s) 82, 961
HinP1I GCGC 2 cut(s) 82, 961
HinfI GANTC 6 cut(s) 262, 456, 557, 683, 772, 1019
HphI GGTGA 3 cut(s) 176, 401, 1109
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 5 cut(s) 316, 595, 625, 727, 1144
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 1 cut(s) 505
HpyAV CCTTC 3 cut(s) 58, 448, 1003
HpyCH4V TGCA 5 cut(s) 326, 778, 875, 1109, 1223
HpyF10VI GCNNNNNNNGC 2 cut(s) 1267, 1276
HpyF3I CTNAG 7 cut(s) 204, 395, 636, 759, 839, 906, 1143
Hsp92II CATG 3 cut(s) 380, 521, 782
HspAI GCGC 2 cut(s) 82, 961
Kzo9I GATC 4 cut(s) 6, 144, 508, 514
LguI GCTCTTC 1 cut(s) 1173
LmnI GCTCC 4 cut(s) 499, 604, 820, 1267
Lsp1109I GCAGC 4 cut(s) 294, 859, 914, 988
LweI GCATC 2 cut(s) 313, 972
MaeI CTAG 2 cut(s) 690, 1327
MaeIII GTNAC 4 cut(s) 164, 407, 680, 1115
MalI GATC 4 cut(s) 8, 146, 510, 516
MboI GATC 4 cut(s) 6, 144, 508, 514
MboII GAAGA 7 cut(s) 163, 170, 368, 683, 752, 1103, 1190
MhlI GDGCHC 3 cut(s) 496, 525, 1247
MlyI GAGTC 2 cut(s) 677, 766
MmeI TCCRAC 1 cut(s) 798
MroXI GAANNNNTTC 2 cut(s) 92, 1182
MseI TTAA 8 cut(s) 45, 647, 974, 1038, 1058, 1230, 1251, 1314
MslI CAYNNNNRTG 4 cut(s) 54, 447, 531, 735
Mva1269I GAATGC 1 cut(s) 578
MwoI GCNNNNNNNGC 2 cut(s) 1267, 1276
NdeII GATC 4 cut(s) 6, 144, 508, 514
NlaIII CATG 3 cut(s) 380, 521, 782
NlaIV GGNNCC 2 cut(s) 600, 697
NmuCI GTSAC 4 cut(s) 164, 407, 680, 1115
NspV TTCGAA 1 cut(s) 1022
PaeR7I CTCGAG 1 cut(s) 1206
PagI TCATGA 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 1173
PctI GAATGC 1 cut(s) 578
PdmI GAANNNNTTC 2 cut(s) 92, 1182
PfeI GAWTC 4 cut(s) 262, 456, 557, 1019
PkrI GCNGC 4 cut(s) 309, 874, 904, 1003
PleI GAGTC 2 cut(s) 677, 766
PpsI GAGTC 2 cut(s) 677, 766
PpuMI RGGWCCY 1 cut(s) 1012
Psp124BI GAGCTC 2 cut(s) 496, 1247
Psp5II RGGWCCY 1 cut(s) 1012
PspEI GGTNACC 1 cut(s) 407
PspN4I GGNNCC 2 cut(s) 600, 697
PspPI GGNCC 3 cut(s) 237, 696, 1012
PspPPI RGGWCCY 1 cut(s) 1012
RsaI GTAC 4 cut(s) 17, 133, 362, 489
RsaNI GTAC 4 cut(s) 16, 132, 361, 488
RseI CAYNNNNRTG 4 cut(s) 54, 447, 531, 735
SacI GAGCTC 2 cut(s) 496, 1247
SapI GCTCTTC 1 cut(s) 1173
SaqAI TTAA 8 cut(s) 45, 647, 974, 1038, 1058, 1230, 1251, 1314
SatI GCNGC 4 cut(s) 308, 873, 903, 1002
Sau3AI GATC 4 cut(s) 6, 144, 508, 514
Sau96I GGNCC 3 cut(s) 237, 696, 1012
ScaI AGTACT 1 cut(s) 17
SchI GAGTC 2 cut(s) 677, 766
SduI GDGCHC 3 cut(s) 496, 525, 1247
SfaNI GCATC 2 cut(s) 313, 972
Sfr274I CTCGAG 1 cut(s) 1206
SfuI TTCGAA 1 cut(s) 1022
SinI GGWCC 1 cut(s) 1012
SlaI CTCGAG 1 cut(s) 1206
SmiMI CAYNNNNRTG 4 cut(s) 54, 447, 531, 735
SmlI CTYRAG 4 cut(s) 915, 1154, 1206, 1271
SmoI CTYRAG 4 cut(s) 915, 1154, 1206, 1271
SpeI ACTAGT 1 cut(s) 689
SspMI CTAG 2 cut(s) 690, 1327
SstI GAGCTC 2 cut(s) 496, 1247
StyI CCWWGG 4 cut(s) 112, 370, 419, 551
TaqI TCGA 6 cut(s) 62, 503, 770, 1022, 1068, 1207
TatI WGTACW 3 cut(s) 15, 131, 360
TfiI GAWTC 4 cut(s) 262, 456, 557, 1019
Tru1I TTAA 8 cut(s) 45, 647, 974, 1038, 1058, 1230, 1251, 1314
Tru9I TTAA 8 cut(s) 45, 647, 974, 1038, 1058, 1230, 1251, 1314
TscAI CASTG 2 cut(s) 567, 763
TseFI GTSAC 4 cut(s) 164, 407, 680, 1115
TseI GCWGC 4 cut(s) 307, 872, 902, 1001
Tsp45I GTSAC 4 cut(s) 164, 407, 680, 1115
TspDTI ATGAA 7 cut(s) 85, 369, 753, 795, 807, 1175, 1191
TspRI CASTG 2 cut(s) 567, 763
VpaK11BI GGWCC 1 cut(s) 1012
XagI CCTNNNNNAGG 1 cut(s) 1040
XapI RAATTY 4 cut(s) 286, 345, 783, 1226
XcmI CCANNNNNNNNNTGG 2 cut(s) 222, 449
XhoI CTCGAG 1 cut(s) 1206
XmnI GAANNNNTTC 2 cut(s) 92, 1182
XspI CTAG 2 cut(s) 690, 1327
ZrmI AGTACT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.