Rroxscaffold_2G00111790

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000253
Physical Location & Seq
Reverse (-)
36514204 .. 36520132
5929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111790.1

Sequence Viewer

Length: 3618 bp
ATGAACACGAACTTGGTACGCCATTCTTGCCAAGCCGAAGCGGGGATGGATCTGGAGACAGAAGTCCATTTGGCGATGGAGTTGAAGATGGGCAGCGACTATATTCTTGTCCCAAAGGGATTTCACAGCCTGCAATTGAGATTTCTGTACACAAGTACTACAGGGGAAACCCACCGGGTTGATGCTGTTATTGAGGTACAAAACAAGCACAAGCTGTGGTGTCATAAATTCCAGAGTTCCAGACTTTTGATTTCAACGGATTTTAAATTTGATAAACCCTTTTGTGCAGGCATAAAGGCAAGGACAGCAACTGCAGTCCAGACTCCAGAGTTTCAATTTGAGGACCATCGGAGACGCTGCTCTGGTATATTCATCGGGACGCTGCCCGACATGAGTCATCGGGACGCTGCCCTGCATGGTTCATCGGGACGCTGCCCGGCATGGTTCATCGGAGACGCTGCTCCGGCATGTTTTCTTTTATGCAGCATCGCTGAGCCACCTGTGAACACAAAGAGAGTGGAGATCATGGTCATGGATGCAAGTGGCCACATTTGTACTGAAAGAGCTCTTGACGCCCGCGGAAAGGTACTTGAACAAGGTCCGGAATATCACAGATCCTCATTCCTGAGCATCATACCTATTCATCCACCTCCTAAAGACAGAGTCACTTGGGTGACTGAGGTACAAGTTCATTCAGGGTACCTTACTTTTGATCAGAGTTCCGAGGATCAAGTAATAAGAACTTGTCGAACTCATGGTGCATCATTTCAAGCTTGTACATTAGAAAAGGTCAACAATGATGAGGAAGGTGATTCTTTTACTCCTCAGGAAGATTTCTATCCTGTTCTTCATAAGATGCTGAGAGACAAACAAGACTGGAAACATACTCCTTATTTCCGAGGAGTAGCGACCTTTGAGCTTGGCACTATGGAGTGGACTGATTCTATAATGAGAAGATTTTGGGGTATTTTGGAGAAAGCAGGAATATTTGGTGCTGTTGGAGTCTCTTGCTTCCCCTACCACTATTCTACAAATACATGGAAGGCCTTTTGTGAATTATGGGGGCCACTAACCAATACACTGCACCATGGGAATGGAGAAATGGGCATTTCTCTATATGATATGAGAGTGATTGGAGGTCTACCAATTCTGGAGCATCCATATGAAGAATTTATCCCTGTCAACAGTGAACTACATTGCAGTGGGCGCTATCCATCTACAGTTGCTGAGCTCTTGCGCATTCACTCGCAGCTGTGTATTTCTCACAAAAGGGATTTCATTTATTGGGATGAGTGGGCTGATTATTTTTACCGCGGGAAGATATTGTATGCGGCTTATGGTGAGGTTGGGAATAGAAAGGCTTATCCACATCAGGGCAGTTTTGCACGGCGGCAACCCGATTTAACTATTTCAAAGGAGGGGGGCCTGGCTGCATTTTTAGCATATTGGCTTAGCAGGTTTGTCTTACCCTCTAGTCATTCCAATCTCCGTCCCGACACATTTCATATGGCTTCTTTGATGGCACAAGGCATCAAGGTTTCTTTAGCACCTTCAGTACTGGGCTATATTTACCATGGTCTTGGCCTAGCTGCCACTGATCCAGAAGGGCCTGGAAATTTGAATGTTTGCTTTCCCATTCATTATGTTATTGGTTGGCTAGGAGAACACTTCCCCTGCTTATATAGAGCCCGAGCCGATAGTGACTTCCCAACTAACCATCCGTATTTGGCAAGATATGCGGGTATTGAGGCCGTTGATTTGGATATTTCATCGGCTAGACGTGTTTTCAGAACTGATATTTCTGTGATTTACCGTCCTAGTTCATTTATTGAACAAAGCGGTTGCTTTTTGACTGAAGATAGTGGCCTGTCAAGTGATCAGTTCGAGTTGTTGGTTTGTATGCGCTCTTCATTGTTGCCGGTGAGAGTGGGACGTGATCTTTGCTTGGAACCATATTATCCGAACAGATTTGCTCGCCAATTTGGCTTTGATCAAGGGGTTCCCTCAAACAGACTCAGTTTTGGCCTTGCAAAAAGGCGTCAGTGCTGCATTGAGGATTTAGCCAAGGCTCAGCAGATACTCCTCCAGACAGATACCGGCGCTCGCTTTTACATTCCGCGTTCAGGGTCTGTGTCCAATGTTTACTTGACATTGACAAAACGTCGACTTGAGAAAAGAGATGATATATTTGTGATCAAATCCATCAGAGAGTTCTCTTCCAATTTGCGGAAAGAGGTCTTGTTTTCAGAAGAGGACATAAGTAGGTCAGCCACCTATGACAAGAATCCCCAACTTGCTAAAAGGACGAACAGGTCGGGTGAATATCGGAAAGCATCTTCGAGTAATTCTGAAGCTAGGTATTCAAAACGACACCGCAACGAGCGACATGGCATCAAAGAAACTACCAGAGCACCATTTCAAAATAGTGGGGCAGAAAAGACTCTCAAGTGTGCTCAATTTGAGAGATACGATGGTTATGAAGATGGCAGAATTGATGATACAACTTTCCCTCAGGATGATTTTGTTCAGGATAGAGATGTTGCCCCCTGTGATGGTGACAAAATCACTACTCCAAGGTTGAAATCAGTAATATCGAGAGTTACAGAATCAAATGATTCAGAAGTGGAGACACCGCTAAAGGACTTGGAACAAAAGTCAAGGAGACCACCTGAGTTGGAGCAGGAAAATTTGGAACCAAAATCAAATTGCTCAATGTCTAAAGAATGTGATGTAGGGGTACTAGTGGAGACCCCGGCGCTGGAGACAAATGATTTTGAACCAAACCCACAGCAATCAGGGCCTAGGTTGAAAGATTCCAAAATCCAAGCTGAAGATGTCCATGACTCTGTTAGTGGAGCCACTGAACCTATCGATTCCAACGCCTCCGAGCATATTGATGAAGGTATTAACTCACTCACTGAGGCTACATCGATTCCGCATGAAATTTTTGGTGAAGGATTGAATAAACTCCGGATGGATTTTATTATCGCCGAGATACAACAGATCGTAGGCAAATTGAACTCGTCTCAATCATTTGGGGCAATTCTTGATTGCCAAGACGAAATTTTAAAAACCCTTGATGTGTTGGAGTTGATGTTCAAAACCCTTGGCTCTGGTAAGGACAGATTTGAGTGGTTTACTGCTAAAGTTTATCTAACCTTTGACTTGGCAGCTCAGCTTTCTCAAGACATGAGCATTATTGAGAAAGATTATGGATTGGACACTGAGCGCATCAATGAGTTAATTCAAAACCATAAAAAGTGTCAAGCTGCCAAGAAAGTCCTTGATTCGGAATTATTGAGCCTTAATCAGGAACTTGAAAGTTTAAAGGCCACCGAACGAAGTATTATTGAGGTAGAAGAGAAAGCTCTACGACTGCGCAAGGATTATGAGATAGCAAAAATTCACCTTGAAAAGAAAATAAGCTGGTCAGAGGCTTCTCTCGAGCGTCAAAACAAACTGGATGAAGAGCTTCGTCAGGCAAGGATTGAGGCCCGAGAGGATAAACTTGCAGAATTTAAGAATGTCCAGAACTCATTTAAAGTCCGGCAAGAGGAGCTTGAGAAGCAAATAGACACTTTGAAATTGTTTGGTCAACAGCTTAAACAGAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1205

Amino Acids

137.09

Weight (kDa)

5.95

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 328 - 675 2.4e-32 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2311
Acc16I TGCGCA 2 cut(s) 1238, 3380
Acc36I ACCTGC 1 cut(s) 1446
Acc65I GGTACC 1 cut(s) 699
AccB1I GGYRCC 1 cut(s) 699
AccI GTMKAC 2 cut(s) 1141, 2164
AccII CGCG 3 cut(s) 579, 1314, 2119
AccIII TCCGGA 2 cut(s) 601, 2970
AclWI GGATC 4 cut(s) 57, 609, 735, 1592
AcoI YGGCCR 1 cut(s) 544
AcsI RAATTY 9 cut(s) 227, 266, 1169, 1615, 2686, 2943, 3063, 3402, 3515
AcuI CTGAAG 4 cut(s) 1536, 1875, 2370, 2850
AcyI GRCGYC 2 cut(s) 573, 2038
AflIII ACRYGT 1 cut(s) 1780
AhdI GACNNNNNGTC 1 cut(s) 2160
AhlI ACTAGT 1 cut(s) 2740
AjiI CACGTC 2 cut(s) 1781, 1934
AjnI CCWGG 2 cut(s) 1425, 1609
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AleI CACNNNNGTG 1 cut(s) 671
AloI GAACNNNNNNTCC 2 cut(s) 3080, 3112
Alw21I GWGCWC 4 cut(s) 568, 1233, 2413, 2455
AlwI GGATC 4 cut(s) 57, 609, 735, 1592
AlwNI CAGNNNCTG 3 cut(s) 311, 1226, 2129
Ama87I CYCGRG 3 cut(s) 1689, 3443, 3495
Aor13HI TCCGGA 2 cut(s) 601, 2970
ApoI RAATTY 9 cut(s) 227, 266, 1169, 1615, 2686, 2943, 3063, 3402, 3515
ArsI GACNNNNNNTTYG 2 cut(s) 1923, 1955
Asp700I GAANNNNTTC 1 cut(s) 3471
Asp718I GGTACC 1 cut(s) 699
AspA2I CCTAGG 1 cut(s) 2801
AspLEI GCGC 7 cut(s) 1209, 1239, 1905, 2102, 2758, 3231, 3381
AspS9I GGNCC 7 cut(s) 343, 599, 1064, 1423, 1607, 2798, 3493
AsuC2I CCSGG 3 cut(s) 176, 437, 2753
AsuHPI GGTGA 8 cut(s) 685, 821, 1352, 1933, 2330, 2567, 2963, 3398
AvaI CYCGRG 3 cut(s) 1689, 3443, 3495
AvaII GGWCC 2 cut(s) 343, 599
AvrII CCTAGG 1 cut(s) 2801
AxyI CCTNAGG 2 cut(s) 825, 2511
BaeI ACNNNNGTAYC 2 cut(s) 2458, 2491
BalI TGGCCA 1 cut(s) 546
BanI GGYRCC 1 cut(s) 699
BanII GRGCYC 3 cut(s) 568, 1233, 1690
BarI GAAGNNNNNNTAC 2 cut(s) 1891, 1923
Bbv12I GWGCWC 4 cut(s) 568, 1233, 2413, 2455
BceAI ACGGC 2 cut(s) 1403, 1736
BciT130I CCWGG 2 cut(s) 1427, 1611
BclI TGATCA 4 cut(s) 712, 1876, 1990, 2193
BcnI CCSGG 3 cut(s) 176, 437, 2753
BcuI ACTAGT 1 cut(s) 2740
BfaI CTAG 9 cut(s) 1473, 1586, 1658, 1776, 1818, 2355, 2741, 2802, 3616
BfmI CTRYAG 3 cut(s) 159, 312, 1218
BfoI RGCGCY 3 cut(s) 1210, 2103, 2759
BfuAI ACCTGC 1 cut(s) 1446
BglI GCCNNNNNGGC 1 cut(s) 1983
BlnI CCTAGG 1 cut(s) 2801
BlpI GCTNAGC 5 cut(s) 492, 1227, 1451, 2070, 3174
BmcAI AGTACT 2 cut(s) 157, 1557
Bme1390I CCNGG 5 cut(s) 176, 437, 1427, 1611, 2753
Bme18I GGWCC 2 cut(s) 343, 599
BmeRI GACNNNNNGTC 1 cut(s) 2160
BmeT110I CYCGRG 3 cut(s) 1689, 3443, 3495
BmgBI CACGTC 2 cut(s) 1781, 1934
BmgT120I GGNCC 7 cut(s) 343, 599, 1064, 1423, 1607, 2798, 3493
BmiI GGNNCC 7 cut(s) 701, 1065, 1424, 1950, 2001, 2694, 2857
BmrFI CCNGG 5 cut(s) 176, 437, 1427, 1611, 2753
BmrI ACTGGG 1 cut(s) 1568
BmuI ACTGGG 1 cut(s) 1568
BoxI GACNNNNGTC 2 cut(s) 62, 393
BpmI CTGGAG 5 cut(s) 74, 309, 1172, 2069, 2780
Bpu10I CCTNAGC 1 cut(s) 626
Bpu1102I GCTNAGC 5 cut(s) 492, 1227, 1451, 2070, 3174
BpuEI CTTGAG 4 cut(s) 2189, 2429, 3168, 3581
BpuMI CCSGG 3 cut(s) 176, 437, 2753
Bsa29I ATCGAT 2 cut(s) 2871, 2930
BsaBI GATNNNNATC 1 cut(s) 837
BsaHI GRCGYC 2 cut(s) 573, 2038
BsaI GGTCTC 2 cut(s) 2656, 2741
BsaWI WCCGGW 2 cut(s) 601, 2970
BsaXI ACNNNNNCTCC 2 cut(s) 3080, 3110
Bse118I RCCGGY 2 cut(s) 1918, 2096
Bse1I ACTGG 3 cut(s) 881, 1563, 3465
Bse21I CCTNAGG 2 cut(s) 825, 2511
Bse3DI GCAATG 1 cut(s) 1195
Bse8I GATNNNNATC 1 cut(s) 837
BseAI TCCGGA 2 cut(s) 601, 2970
BseBI CCWGG 2 cut(s) 1427, 1611
BseCI ATCGAT 2 cut(s) 2871, 2930
BseGI GGATG 9 cut(s) 51, 541, 643, 1156, 1294, 1717, 2521, 2979, 3469
BseJI GATNNNNATC 1 cut(s) 837
BseMI GCAATG 1 cut(s) 1195
BseNI ACTGG 3 cut(s) 881, 1563, 3465
BseRI GAGGAG 4 cut(s) 813, 915, 2072, 3569
BsgI GTGCAG 2 cut(s) 306, 1067
Bsh1236I CGCG 3 cut(s) 579, 1314, 2119
BshNI GGYRCC 1 cut(s) 699
BshVI ATCGAT 2 cut(s) 2871, 2930
BsiHKAI GWGCWC 4 cut(s) 568, 1233, 2413, 2455
BsiHKCI CYCGRG 3 cut(s) 1689, 3443, 3495
BsiSI CCGG 9 cut(s) 175, 437, 464, 602, 1919, 2097, 2753, 2971, 3547
BslFI GGGAC 6 cut(s) 95, 391, 416, 441, 1476, 1944
BsmBI CGTCTC 3 cut(s) 346, 447, 3030
BsmFI GGGAC 6 cut(s) 95, 391, 416, 441, 1476, 1944
BsmI GAATGC 1 cut(s) 1239
Bso31I GGTCTC 2 cut(s) 2656, 2741
BsoBI CYCGRG 3 cut(s) 1689, 3443, 3495
Bsp1286I GDGCHC 5 cut(s) 568, 1233, 1690, 2413, 2455
Bsp13I TCCGGA 2 cut(s) 601, 2970
Bsp1407I TGTACA 2 cut(s) 147, 776
Bsp1720I GCTNAGC 5 cut(s) 492, 1227, 1451, 2070, 3174
Bsp19I CCATGG 2 cut(s) 1087, 1573
BspDI ATCGAT 2 cut(s) 2871, 2930
BspEI TCCGGA 2 cut(s) 601, 2970
BspFNI CGCG 3 cut(s) 579, 1314, 2119
BspLI GGNNCC 7 cut(s) 701, 1065, 1424, 1950, 2001, 2694, 2857
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 1446
BspPI GGATC 4 cut(s) 57, 609, 735, 1592
BspQI GCTCTTC 2 cut(s) 1912, 3462
BspT107I GGYRCC 1 cut(s) 699
BspTNI GGTCTC 2 cut(s) 2656, 2741
BsrDI GCAATG 1 cut(s) 1195
BsrFI RCCGGY 2 cut(s) 1918, 2096
BsrGI TGTACA 2 cut(s) 147, 776
BsrI ACTGG 3 cut(s) 881, 1563, 3465
BssAI RCCGGY 2 cut(s) 1918, 2096
BssNI GRCGYC 2 cut(s) 573, 2038
BssT1I CCWWGG 6 cut(s) 1087, 1573, 2064, 2573, 2801, 3106
Bst2UI CCWGG 2 cut(s) 1427, 1611
Bst4CI ACNGT 3 cut(s) 1187, 1222, 1814
Bst6I CTCTTC 5 cut(s) 1912, 2221, 2244, 3354, 3462
BstACI GRCGYC 2 cut(s) 573, 2038
BstAPI GCANNNNNTGC 1 cut(s) 1736
BstAUI TGTACA 2 cut(s) 147, 776
BstC8I GCNNGC 5 cut(s) 131, 289, 577, 1975, 2104
BstDSI CCRYGG 4 cut(s) 577, 1087, 1312, 1573
BstENI CCTNNNNNAGG 1 cut(s) 3308
BstF5I GGATG 9 cut(s) 51, 541, 643, 1156, 1294, 1717, 2521, 2979, 3469
BstFNI CGCG 3 cut(s) 579, 1314, 2119
BstH2I RGCGCY 3 cut(s) 1210, 2103, 2759
BstHHI GCGC 7 cut(s) 1209, 1239, 1905, 2102, 2758, 3231, 3381
BstNI CCWGG 2 cut(s) 1427, 1611
BstNSI RCATGY 1 cut(s) 471
BstPAI GACNNNNGTC 2 cut(s) 62, 393
BstSCI CCNGG 5 cut(s) 174, 435, 1425, 1609, 2751
BstSFI CTRYAG 3 cut(s) 159, 312, 1218
BstUI CGCG 3 cut(s) 579, 1314, 2119
BstX2I RGATCY 2 cut(s) 49, 614
BstXI CCANNNNNNTGG 2 cut(s) 1094, 1580
BstYI RGATCY 2 cut(s) 49, 614
Bsu15I ATCGAT 2 cut(s) 2871, 2930
Bsu36I CCTNAGG 2 cut(s) 825, 2511
BsuTUI ATCGAT 2 cut(s) 2871, 2930
BtgI CCRYGG 4 cut(s) 577, 1087, 1312, 1573
BtgZI GCGATG 2 cut(s) 89, 472
BtrI CACGTC 2 cut(s) 1781, 1934
BtsCI GGATG 9 cut(s) 51, 541, 643, 1156, 1294, 1717, 2521, 2979, 3469
BtsI GCAGTG 2 cut(s) 1079, 1207
BtsIMutI CAGTG 8 cut(s) 1079, 1192, 1207, 1593, 2048, 2859, 2916, 3222
BveI ACCTGC 1 cut(s) 1446
Cac8I GCNNGC 5 cut(s) 131, 289, 577, 1975, 2104
CaiI CAGNNNCTG 3 cut(s) 311, 1226, 2129
CfoI GCGC 7 cut(s) 1209, 1239, 1905, 2102, 2758, 3231, 3381
Cfr10I RCCGGY 2 cut(s) 1918, 2096
Cfr13I GGNCC 7 cut(s) 343, 599, 1064, 1423, 1607, 2798, 3493
Cfr42I CCGCGG 2 cut(s) 580, 1315
ClaI ATCGAT 2 cut(s) 2871, 2930
CseI GACGC 8 cut(s) 363, 388, 413, 438, 464, 581, 2027, 3437
CspCI CAANNNNNGTGG 4 cut(s) 498, 533, 2655, 2690
DraI TTTAAA 4 cut(s) 265, 3069, 3327, 3541
DrdI GACNNNNNNGTC 1 cut(s) 2311
DriI GACNNNNNGTC 1 cut(s) 2160
DseDI GACNNNNNNGTC 1 cut(s) 2311
EaeI YGGCCR 1 cut(s) 544
Eam1104I CTCTTC 5 cut(s) 1912, 2221, 2244, 3354, 3462
Eam1105I GACNNNNNGTC 1 cut(s) 2160
EarI CTCTTC 5 cut(s) 1912, 2221, 2244, 3354, 3462
Ecl136II GAGCTC 2 cut(s) 566, 1231
Eco130I CCWWGG 6 cut(s) 1087, 1573, 2064, 2573, 2801, 3106
Eco147I AGGCCT 1 cut(s) 1046
Eco24I GRGCYC 3 cut(s) 568, 1233, 1690
Eco31I GGTCTC 2 cut(s) 2656, 2741
Eco47I GGWCC 2 cut(s) 343, 599
Eco53kI GAGCTC 2 cut(s) 566, 1231
Eco57I CTGAAG 4 cut(s) 1536, 1875, 2370, 2850
Eco81I CCTNAGG 2 cut(s) 825, 2511
Eco88I CYCGRG 3 cut(s) 1689, 3443, 3495
EcoICRI GAGCTC 2 cut(s) 566, 1231
EcoNI CCTNNNNNAGG 1 cut(s) 3308
EcoO109I RGGNCCY 3 cut(s) 1423, 1607, 2798
EcoRII CCWGG 2 cut(s) 1425, 1609
EcoT14I CCWWGG 6 cut(s) 1087, 1573, 2064, 2573, 2801, 3106
EcoT38I GRGCYC 3 cut(s) 568, 1233, 1690
ErhI CCWWGG 6 cut(s) 1087, 1573, 2064, 2573, 2801, 3106
Esp3I CGTCTC 3 cut(s) 346, 447, 3030
FalI AAGNNNNNCTT 2 cut(s) 3543, 3575
FaqI GGGAC 6 cut(s) 95, 391, 416, 441, 1476, 1944
FauI CCCGC 4 cut(s) 34, 584, 1307, 1732
FauNDI CATATG 2 cut(s) 1162, 1506
FbaI TGATCA 4 cut(s) 712, 1876, 1990, 2193
FblI GTMKAC 2 cut(s) 1141, 2164
FokI GGATG 9 cut(s) 58, 548, 630, 1143, 1301, 1704, 2528, 2986, 3476
FriOI GRGCYC 3 cut(s) 568, 1233, 1690
FspBI CTAG 9 cut(s) 1473, 1586, 1658, 1776, 1818, 2355, 2741, 2802, 3616
FspI TGCGCA 2 cut(s) 1238, 3380
GlaI GCGC 7 cut(s) 1208, 1238, 1904, 2101, 2757, 3230, 3380
GsuI CTGGAG 5 cut(s) 74, 309, 1172, 2069, 2780
HaeII RGCGCY 3 cut(s) 1210, 2103, 2759
HapII CCGG 9 cut(s) 175, 437, 464, 602, 1919, 2097, 2753, 2971, 3547
HgaI GACGC 8 cut(s) 363, 388, 413, 438, 464, 581, 2027, 3437
HhaI GCGC 7 cut(s) 1209, 1239, 1905, 2102, 2758, 3231, 3381
Hin1I GRCGYC 2 cut(s) 573, 2038
Hin6I GCGC 7 cut(s) 1207, 1237, 1903, 2100, 2756, 3229, 3379
HinP1I GCGC 7 cut(s) 1207, 1237, 1903, 2100, 2756, 3229, 3379
HincII GTYRAC 4 cut(s) 793, 1183, 2165, 3596
HindII GTYRAC 4 cut(s) 793, 1183, 2165, 3596
HindIII AAGCTT 1 cut(s) 771
HpaII CCGG 9 cut(s) 175, 437, 464, 602, 1919, 2097, 2753, 2971, 3547
HphI GGTGA 8 cut(s) 685, 821, 1352, 1933, 2330, 2567, 2963, 3398
Hpy99I CGWCG 1 cut(s) 2166
HpyAV CCTTC 6 cut(s) 800, 1036, 1560, 1598, 2894, 2948
HpyCH4III ACNGT 3 cut(s) 1187, 1222, 1814
HpyCH4IV ACGT 3 cut(s) 1780, 1933, 2161
HpySE526I ACGT 3 cut(s) 1780, 1933, 2161
Hsp92I GRCGYC 2 cut(s) 573, 2038
HspAI GCGC 7 cut(s) 1207, 1237, 1903, 2100, 2756, 3229, 3379
Kpn2I TCCGGA 2 cut(s) 601, 2970
KpnI GGTACC 1 cut(s) 703
Ksp22I TGATCA 4 cut(s) 712, 1876, 1990, 2193
KspI CCGCGG 2 cut(s) 580, 1315
LguI GCTCTTC 2 cut(s) 1912, 3462
LmnI GCTCC 5 cut(s) 466, 1153, 2677, 2855, 3556
MaeI CTAG 9 cut(s) 1473, 1586, 1658, 1776, 1818, 2355, 2741, 2802, 3616
MaeII ACGT 3 cut(s) 1780, 1933, 2161
MaeIII GTNAC 5 cut(s) 664, 673, 1700, 2555, 2599
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 2 cut(s) 49, 614
MhlI GDGCHC 5 cut(s) 568, 1233, 1690, 2413, 2455
MlsI TGGCCA 1 cut(s) 546
MluNI TGGCCA 1 cut(s) 546
MlyI GAGTC 7 cut(s) 316, 403, 672, 1011, 2007, 2434, 2837
MmeI TCCRAC 4 cut(s) 979, 2655, 2901, 3066
Mox20I TGGCCA 1 cut(s) 546
MroI TCCGGA 2 cut(s) 601, 2970
MroXI GAANNNNTTC 1 cut(s) 3471
MscI TGGCCA 1 cut(s) 546
MslI CAYNNNNRTG 6 cut(s) 530, 671, 1092, 1161, 1200, 2895
Msp20I TGGCCA 1 cut(s) 546
MspA1I CMGCKG 3 cut(s) 579, 1252, 1314
MspI CCGG 9 cut(s) 175, 437, 464, 602, 1919, 2097, 2753, 2971, 3547
MspR9I CCNGG 5 cut(s) 176, 437, 1427, 1611, 2753
MunI CAATTG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 1239
MvaI CCWGG 2 cut(s) 1427, 1611
MvnI CGCG 3 cut(s) 579, 1314, 2119
NciI CCSGG 3 cut(s) 176, 437, 2753
NcoI CCATGG 2 cut(s) 1087, 1573
NdeI CATATG 2 cut(s) 1162, 1506
NlaIV GGNNCC 7 cut(s) 701, 1065, 1424, 1950, 2001, 2694, 2857
NmeAIII GCCGAG 1 cut(s) 3016
NmuCI GTSAC 4 cut(s) 664, 673, 1700, 2555
NsbI TGCGCA 2 cut(s) 1238, 3380
NspI RCATGY 1 cut(s) 471
OliI CACNNNNGTG 1 cut(s) 671
PaeR7I CTCGAG 1 cut(s) 3443
PceI AGGCCT 1 cut(s) 1046
PciSI GCTCTTC 2 cut(s) 1912, 3462
PctI GAATGC 1 cut(s) 1239
PdmI GAANNNNTTC 1 cut(s) 3471
PfeI GAWTC 9 cut(s) 812, 941, 2284, 2606, 2615, 2813, 2873, 2932, 3287
PflFI GACNNNGTC 1 cut(s) 662
PleI GAGTC 7 cut(s) 316, 402, 671, 1010, 2007, 2434, 2837
PpsI GAGTC 7 cut(s) 316, 402, 671, 1010, 2007, 2434, 2837
PshAI GACNNNNGTC 2 cut(s) 62, 393
Psp124BI GAGCTC 2 cut(s) 568, 1233
Psp6I CCWGG 2 cut(s) 1425, 1609
PspGI CCWGG 2 cut(s) 1425, 1609
PspN4I GGNNCC 7 cut(s) 701, 1065, 1424, 1950, 2001, 2694, 2857
PspPI GGNCC 7 cut(s) 343, 599, 1064, 1423, 1607, 2798, 3493
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 3 cut(s) 311, 1226, 2129
PsuI RGATCY 2 cut(s) 49, 614
PsyI GACNNNGTC 1 cut(s) 662
PvuII CAGCTG 1 cut(s) 1252
RseI CAYNNNNRTG 6 cut(s) 530, 671, 1092, 1161, 1200, 2895
SacI GAGCTC 2 cut(s) 568, 1233
SacII CCGCGG 2 cut(s) 580, 1315
SalI GTCGAC 1 cut(s) 2163
SapI GCTCTTC 2 cut(s) 1912, 3462
Sau96I GGNCC 7 cut(s) 343, 599, 1064, 1423, 1607, 2798, 3493
ScaI AGTACT 2 cut(s) 157, 1557
SchI GAGTC 7 cut(s) 316, 403, 672, 1011, 2007, 2434, 2837
ScrFI CCNGG 5 cut(s) 176, 437, 1427, 1611, 2753
SduI GDGCHC 5 cut(s) 568, 1233, 1690, 2413, 2455
SfcI CTRYAG 3 cut(s) 159, 312, 1218
Sfr274I CTCGAG 1 cut(s) 3443
Sfr303I CCGCGG 2 cut(s) 580, 1315
SgrBI CCGCGG 2 cut(s) 580, 1315
SinI GGWCC 2 cut(s) 343, 599
SlaI CTCGAG 1 cut(s) 3443
SmiMI CAYNNNNRTG 6 cut(s) 530, 671, 1092, 1161, 1200, 2895
SmlI CTYRAG 5 cut(s) 2168, 2444, 3183, 3443, 3560
SmoI CTYRAG 5 cut(s) 2168, 2444, 3183, 3443, 3560
SpeI ACTAGT 1 cut(s) 2740
SseBI AGGCCT 1 cut(s) 1046
SspI AATATT 1 cut(s) 987
SspMI CTAG 9 cut(s) 1473, 1586, 1658, 1776, 1818, 2355, 2741, 2802, 3616
SstI GAGCTC 2 cut(s) 568, 1233
StuI AGGCCT 1 cut(s) 1046
StyD4I CCNGG 5 cut(s) 174, 435, 1425, 1609, 2751
StyI CCWWGG 6 cut(s) 1087, 1573, 2064, 2573, 2801, 3106
TaaI ACNGT 3 cut(s) 1187, 1222, 1814
TaiI ACGT 3 cut(s) 1783, 1936, 2164
TaqI TCGA 8 cut(s) 748, 1884, 2164, 2339, 2594, 2871, 2930, 3444
TatI WGTACW 5 cut(s) 147, 155, 554, 776, 1555
TauI GCSGC 2 cut(s) 1334, 1393
TfiI GAWTC 9 cut(s) 812, 941, 2284, 2606, 2615, 2813, 2873, 2932, 3287
TscAI CASTG 8 cut(s) 1086, 1192, 1207, 1600, 2048, 2866, 2923, 3229
TseFI GTSAC 4 cut(s) 664, 673, 1700, 2555
Tsp45I GTSAC 4 cut(s) 664, 673, 1700, 2555
TspGWI ACGGA 3 cut(s) 272, 1478, 1710
TspRI CASTG 8 cut(s) 1086, 1192, 1207, 1600, 2048, 2866, 2923, 3229
Tth111I GACNNNGTC 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 343, 599
XagI CCTNNNNNAGG 1 cut(s) 3308
XapI RAATTY 9 cut(s) 227, 266, 1169, 1615, 2686, 2943, 3063, 3402, 3515
XceI RCATGY 1 cut(s) 471
XhoI CTCGAG 1 cut(s) 3443
XmaJI CCTAGG 1 cut(s) 2801
XmiI GTMKAC 2 cut(s) 1141, 2164
XmnI GAANNNNTTC 1 cut(s) 3471
XspI CTAG 9 cut(s) 1473, 1586, 1658, 1776, 1818, 2355, 2741, 2802, 3616
ZrmI AGTACT 2 cut(s) 157, 1557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.