Rmu_sc0015930.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015930.1
OG0000253
Physical Location & Seq
Reverse (-)
31048 .. 33568
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015930.1_g000011.1.cds

Sequence Viewer

Length: 900 bp
atggtgaagcacgcagctacaatatggcttttagagatgctgctccggtctagtcatcagaggcgctgctcttgcatggattatcgggacgctgctctggcttgtttcatcggagacgctgcttcgacatgttcatttgagatgctgctccgacatgtcgaagttccagttagtgcagcaagctcggagttcgcgccatccatcaccggcggccagttcgtgctgaagaaggaagtcgtcggttgcttggcttcgccgatcacgaaatcaaaaccacagctcatctctggtaggaattggcgctcgagctcgacctctggtgctcgacctaggctcaccggccttgacacaggccagtggcagaggagaacatgggtttggtatgccggtggcggaggagaaccacgatttggtcatggatgcaagcggccacattgtaccgaaagagcttttgacgcccgtgggaaggtacttgaacaaggtctggaatatcacagatcctcaatcctgagcagcatacctattcatccacctcctaaagacaaagttacttgggtgattgaggtacaagttcattcagggtaccttacttttgatcagagttccgaggaacaagtaataagaacctgtcgaactcatggtgcattatttcaagctcgtacattggaaaaggtcaacaatgatgaggaaggtgattcttttactcctcaggaagatttctatcctgttcttcataagatgcttagagacaaacaagactggaaacatactccttatttccgaagagtagcaaccattgagcttggcactatggagtggactgattctatgatgagaaaatttggaggtatgattgaattatttgtttatgaagagatttttcctttctacctagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

34.07

Weight (kDa)

8.1

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 582
AccB7I CCANNNNNTGG 1 cut(s) 410
AccII CGCG 1 cut(s) 194
AciI CCGC 3 cut(s) 210, 393, 427
AclWI GGATC 1 cut(s) 492
AcoI YGGCCR 2 cut(s) 211, 428
AcsI RAATTY 1 cut(s) 839
AcuI CTGAAG 1 cut(s) 245
AcyI GRCGYC 1 cut(s) 456
AfaI GTAC 5 cut(s) 439, 471, 567, 584, 661
AfiI CCNNNNNNNGG 2 cut(s) 410, 466
AflIII ACRYGT 2 cut(s) 128, 154
AgsI TTSAA 3 cut(s) 476, 653, 857
AjuI GAANNNNNNNTTGG 4 cut(s) 361, 393, 393, 425
AluBI AGCT 7 cut(s) 17, 183, 280, 309, 449, 656, 802
AluI AGCT 7 cut(s) 17, 183, 280, 309, 449, 656, 802
Alw21I GWGCWC 2 cut(s) 311, 325
Alw26I GTCTC 2 cut(s) 108, 741
AlwI GGATC 1 cut(s) 492
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 4 cut(s) 211, 340, 352, 428
ApeKI GCWGC 8 cut(s) 14, 40, 66, 92, 119, 145, 176, 513
ApoI RAATTY 1 cut(s) 839
Asp718I GGTACC 1 cut(s) 582
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 3 cut(s) 66, 196, 303
AsuHPI GGTGA 5 cut(s) 16, 196, 328, 568, 704
AvaI CYCGRG 1 cut(s) 304
AvrII CCTAGG 1 cut(s) 329
AxyI CCTNAGG 1 cut(s) 708
BanI GGYRCC 1 cut(s) 582
BanII GRGCYC 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 311, 325
BbvI GCAGC 8 cut(s) 26, 27, 53, 79, 106, 132, 188, 525
BccI CCATC 2 cut(s) 205, 209
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 108, 741
BfaI CTAG 3 cut(s) 51, 330, 893
BfoI RGCGCY 2 cut(s) 67, 304
BlnI CCTAGG 1 cut(s) 329
BmeT110I CYCGRG 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 584
BmsI GCATC 4 cut(s) 27, 132, 410, 729
Bpu10I CCTNAGC 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 3 cut(s) 329, 460, 606
BsaWI WCCGGW 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 466
Bse118I RCCGGY 3 cut(s) 206, 338, 386
Bse1I ACTGG 4 cut(s) 167, 214, 355, 764
Bse21I CCTNAGG 1 cut(s) 708
Bse8I GATNNNNATC 1 cut(s) 720
BseDI CCNNGG 3 cut(s) 329, 460, 606
BseGI GGATG 3 cut(s) 197, 425, 526
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 2 cut(s) 410, 466
BseMII CTCAG 2 cut(s) 500, 722
BseNI ACTGG 4 cut(s) 167, 214, 355, 764
BseRI GAGGAG 3 cut(s) 379, 411, 696
BseXI GCAGC 8 cut(s) 26, 27, 53, 79, 106, 132, 188, 525
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 4 cut(s) 213, 342, 354, 430
BshNI GGYRCC 1 cut(s) 582
BsiHKAI GWGCWC 2 cut(s) 311, 325
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 4 cut(s) 46, 207, 339, 387
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 410, 466
BsmAI GTCTC 2 cut(s) 108, 741
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 4 cut(s) 213, 342, 354, 430
BsoBI CYCGRG 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 311, 325
Bsp143I GATC 3 cut(s) 258, 497, 595
BspACI CCGC 3 cut(s) 210, 393, 427
BspANI GGCC 4 cut(s) 213, 342, 354, 430
BspCNI CTCAG 2 cut(s) 501, 721
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 584
BspPI GGATC 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 582
BsrFI RCCGGY 3 cut(s) 206, 338, 386
BsrI ACTGG 4 cut(s) 167, 214, 355, 764
BssAI RCCGGY 3 cut(s) 206, 338, 386
BssECI CCNNGG 3 cut(s) 329, 460, 606
BssMI GATC 3 cut(s) 258, 497, 595
BssNI GRCGYC 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 329
Bst6I CTCTTC 2 cut(s) 778, 867
BstACI GRCGYC 1 cut(s) 456
BstC8I GCNNGC 3 cut(s) 12, 181, 425
BstDEI CTNAG 3 cut(s) 509, 708, 743
BstDSI CCRYGG 1 cut(s) 460
BstF5I GGATG 3 cut(s) 197, 425, 526
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 2 cut(s) 67, 304
BstHHI GCGC 3 cut(s) 66, 196, 303
BstKTI GATC 3 cut(s) 261, 500, 598
BstMAI GTCTC 2 cut(s) 108, 741
BstMBI GATC 3 cut(s) 258, 497, 595
BstMWI GCNNNNNNNGC 3 cut(s) 72, 98, 455
BstNSI RCATGY 2 cut(s) 132, 158
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 8 cut(s) 26, 27, 53, 79, 106, 132, 188, 525
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
Bsu36I CCTNAGG 1 cut(s) 708
BsuRI GGCC 4 cut(s) 213, 342, 354, 430
BtgI CCRYGG 1 cut(s) 460
BtsCI GGATG 3 cut(s) 197, 425, 526
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 12, 181, 425
CfoI GCGC 3 cut(s) 66, 196, 303
Cfr10I RCCGGY 3 cut(s) 206, 338, 386
CseI GACGC 3 cut(s) 98, 125, 464
Csp6I GTAC 5 cut(s) 438, 470, 566, 583, 660
CviAII CATG 6 cut(s) 76, 129, 155, 372, 416, 638
CviQI GTAC 5 cut(s) 438, 470, 566, 583, 660
DdeI CTNAG 3 cut(s) 509, 708, 743
DpnI GATC 3 cut(s) 260, 499, 597
DpnII GATC 3 cut(s) 258, 497, 595
EaeI YGGCCR 2 cut(s) 211, 428
Eam1104I CTCTTC 2 cut(s) 778, 867
EarI CTCTTC 2 cut(s) 778, 867
EciI GGCGGA 1 cut(s) 408
Ecl136II GAGCTC 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 245
Eco81I CCTNAGG 1 cut(s) 708
Eco88I CYCGRG 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 6 cut(s) 79, 132, 158, 375, 419, 641
FaqI GGGAC 1 cut(s) 101
FatI CATG 6 cut(s) 75, 128, 154, 371, 415, 637
FbaI TGATCA 1 cut(s) 595
FokI GGATG 3 cut(s) 184, 432, 513
FriOI GRGCYC 1 cut(s) 311
FspBI CTAG 3 cut(s) 51, 330, 893
GlaI GCGC 3 cut(s) 65, 195, 302
HaeII RGCGCY 2 cut(s) 67, 304
HaeIII GGCC 4 cut(s) 213, 342, 354, 430
HapII CCGG 4 cut(s) 46, 207, 339, 387
HgaI GACGC 3 cut(s) 98, 125, 464
HhaI GCGC 3 cut(s) 66, 196, 303
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 6 cut(s) 79, 132, 158, 375, 419, 641
Hin6I GCGC 3 cut(s) 64, 194, 301
HinP1I GCGC 3 cut(s) 64, 194, 301
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HinfI GANTC 2 cut(s) 695, 824
HpaII CCGG 4 cut(s) 46, 207, 339, 387
HphI GGTGA 5 cut(s) 16, 196, 328, 568, 704
Hpy166II GTNNAC 2 cut(s) 676, 819
Hpy188I TCNGA 7 cut(s) 60, 113, 152, 187, 600, 607, 782
Hpy188III TCNNGA 5 cut(s) 86, 262, 485, 508, 710
Hpy8I GTNNAC 2 cut(s) 676, 819
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 223, 460, 683
HpyCH4V TGCA 4 cut(s) 75, 176, 423, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 98, 455
HpyF3I CTNAG 3 cut(s) 509, 708, 743
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 6 cut(s) 79, 132, 158, 375, 419, 641
HspAI GCGC 3 cut(s) 64, 194, 301
KpnI GGTACC 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 3 cut(s) 258, 497, 595
LmnI GCTCC 2 cut(s) 48, 153
Lsp1109I GCAGC 8 cut(s) 26, 27, 53, 79, 106, 132, 188, 525
LweI GCATC 4 cut(s) 27, 132, 410, 729
MaeI CTAG 3 cut(s) 51, 330, 893
MaeIII GTNAC 1 cut(s) 547
MalI GATC 3 cut(s) 260, 499, 597
MboI GATC 3 cut(s) 258, 497, 595
MboII GAAGA 5 cut(s) 238, 722, 725, 795, 884
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 2 cut(s) 311, 325
MluCI AATT 3 cut(s) 295, 839, 857
MmeI TCCRAC 1 cut(s) 175
MspI CCGG 4 cut(s) 46, 207, 339, 387
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 72, 98, 455
NdeII GATC 3 cut(s) 258, 497, 595
NlaIII CATG 6 cut(s) 79, 132, 158, 375, 419, 641
NlaIV GGNNCC 1 cut(s) 584
NspI RCATGY 2 cut(s) 132, 158
PaeR7I CTCGAG 1 cut(s) 304
PciI ACATGT 2 cut(s) 128, 154
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PfeI GAWTC 2 cut(s) 695, 824
PflMI CCANNNNNTGG 1 cut(s) 410
PscI ACATGT 2 cut(s) 128, 154
Psp124BI GAGCTC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 584
PspXI VCTCGAGB 1 cut(s) 304
PsuI RGATCY 1 cut(s) 497
RsaI GTAC 5 cut(s) 439, 471, 567, 584, 661
RsaNI GTAC 5 cut(s) 438, 470, 566, 583, 660
SacI GAGCTC 1 cut(s) 311
Sau3AI GATC 3 cut(s) 258, 497, 595
SduI GDGCHC 2 cut(s) 311, 325
SfaNI GCATC 4 cut(s) 27, 132, 410, 729
Sfr274I CTCGAG 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 3 cut(s) 295, 839, 857
SsiI CCGC 3 cut(s) 210, 393, 427
SspMI CTAG 3 cut(s) 51, 330, 893
SstI GAGCTC 1 cut(s) 311
StyI CCWWGG 1 cut(s) 329
TaqI TCGA 6 cut(s) 125, 159, 305, 311, 325, 631
TasI AATT 3 cut(s) 295, 839, 857
TauI GCSGC 2 cut(s) 213, 430
TfiI GAWTC 2 cut(s) 695, 824
TscAI CASTG 1 cut(s) 362
TseI GCWGC 8 cut(s) 14, 40, 66, 92, 119, 145, 176, 513
TspDTI ATGAA 6 cut(s) 97, 123, 515, 563, 722, 885
TspRI CASTG 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 839
XceI RCATGY 2 cut(s) 132, 158
XhoI CTCGAG 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 3 cut(s) 51, 330, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.