FvH4_3g31371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000253
Physical Location & Seq
Reverse (-)
25421263 .. 25421982
720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31371.t1

Sequence Viewer

Length: 588 bp
ATGGATGCATATGGTCGCATTTCCTGCAAGGCAGCTTTGGACAAACACAGGCAGGTTGTTGGAAAGGGCATAGAGTACGTGAGATCACGGCCTTTAAACTCCATTCATGTTGATGTCCCTCCTAAAGACATCATTACCTTGGTGACAGAAGTTGAAATGAACTCAGGCTTTCTTACATTTCGCCAAGATTTGGAGGATCAAGTGATAAGAACAACCCGCAACTTTTCCCATGTATTTAAGGGGCATACTTTGGAGAAGGTTGATAACAGACATGATAGAGGTCTTTTCACTTTCGAAGAGAATTTTTACCCGATACTTCACAAGATGCTAAACACCAAACAAGATTGGTCTTCGAGCCTTTGTTTACGGGGTTGTGCTACACTTGAGATAGGAGTAATGGAGTGGACAGAATTCATATTAGCCAATTTTGAAGGCGTGTTGAATCAGGCTGGAATATTTGGTGCCATGATTGGAGGCTTGCCGATTTCAGGGATTCCCTATGAAGAATTTATTCCTGAAAACGGAAGGTTGCAGCGAGATGGATCATACCCTGCTACGCTTTCTGAGCTTTTGTGCATATATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.12

Weight (kDa)

5.68

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 461
AccB7I CCANNNNNTGG 1 cut(s) 190
AciI CCGC 1 cut(s) 217
AclWI GGATC 2 cut(s) 204, 550
AcsI RAATTY 3 cut(s) 301, 410, 506
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 190, 488, 521
AgsI TTSAA 3 cut(s) 155, 431, 442
AluBI AGCT 2 cut(s) 35, 568
AluI AGCT 2 cut(s) 35, 568
AlwI GGATC 2 cut(s) 204, 550
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 32, 532
ApoI RAATTY 3 cut(s) 301, 410, 506
Asp700I GAANNNNTTC 1 cut(s) 510
AsuHPI GGTGA 1 cut(s) 154
AsuII TTCGAA 1 cut(s) 294
BanI GGYRCC 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 44, 544
BccI CCATC 1 cut(s) 533
BceAI ACGGC 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 2 cut(s) 33, 533
BlsI GCNGC 2 cut(s) 34, 534
BmiI GGNNCC 1 cut(s) 463
BmsI GCATC 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 488, 521
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 3 cut(s) 190, 488, 521
BseMII CTCAG 2 cut(s) 177, 555
BseXI GCAGC 2 cut(s) 44, 544
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 461
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 190, 488, 521
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 294
Bsp143I GATC 3 cut(s) 83, 196, 542
BspACI CCGC 1 cut(s) 217
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 2 cut(s) 176, 556
BspLI GGNNCC 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 204, 550
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 83, 196, 542
BssT1I CCWWGG 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 291
BstAPI GCANNNNNTGC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 2 cut(s) 163, 564
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 86, 199, 545
BstMBI GATC 3 cut(s) 83, 196, 542
BstMWI GCNNNNNNNGC 2 cut(s) 24, 565
BstV1I GCAGC 2 cut(s) 44, 544
BstV2I GAAGAC 1 cut(s) 342
BsuRI GGCC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 479
Csp6I GTAC 1 cut(s) 76
CviAII CATG 4 cut(s) 107, 230, 272, 466
CviJI RGCY 8 cut(s) 35, 91, 168, 357, 422, 449, 477, 568
CviKI_1 RGCY 8 cut(s) 35, 91, 168, 357, 422, 449, 477, 568
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 163, 564
DpnI GATC 3 cut(s) 85, 198, 544
DpnII GATC 3 cut(s) 83, 196, 542
DraI TTTAAA 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 110, 233, 275, 469
FaqI GGGAC 1 cut(s) 101
FatI CATG 4 cut(s) 106, 229, 271, 465
FauI CCCGC 1 cut(s) 224
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 33, 533
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 33, 533
GluI GCNGC 2 cut(s) 33, 533
HaeIII GGCC 1 cut(s) 91
Hin1II CATG 4 cut(s) 110, 233, 275, 469
HinfI GANTC 2 cut(s) 442, 493
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 365, 405
Hpy188I TCNGA 1 cut(s) 565
Hpy188III TCNNGA 2 cut(s) 515, 585
Hpy8I GTNNAC 2 cut(s) 365, 405
HpyAV CCTTC 3 cut(s) 250, 425, 519
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 4 cut(s) 8, 27, 532, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 565
HpyF3I CTNAG 2 cut(s) 163, 564
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 4 cut(s) 110, 233, 275, 469
Kzo9I GATC 3 cut(s) 83, 196, 542
LpnPI CCDG 9 cut(s) 34, 37, 38, 150, 431, 435, 474, 528, 564
Lsp1109I GCAGC 2 cut(s) 44, 544
LweI GCATC 1 cut(s) 315
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 142
MalI GATC 3 cut(s) 85, 198, 544
MboI GATC 3 cut(s) 83, 196, 542
MboII GAAGA 3 cut(s) 308, 342, 515
MluCI AATT 4 cut(s) 301, 410, 424, 506
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 4 cut(s) 129, 187, 272, 467
Mph1103I ATGCAT 1 cut(s) 10
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 2 cut(s) 95, 237
MslI CAYNNNNRTG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 24, 565
NdeI CATATG 1 cut(s) 10
NdeII GATC 3 cut(s) 83, 196, 542
NlaIII CATG 4 cut(s) 110, 233, 275, 469
NlaIV GGNNCC 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 10
NspV TTCGAA 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 442, 493
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 2 cut(s) 34, 534
Ppu21I YACGTR 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 463
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 2 cut(s) 95, 237
SatI GCNGC 2 cut(s) 33, 533
Sau3AI GATC 3 cut(s) 83, 196, 542
SetI ASST 8 cut(s) 37, 57, 81, 140, 261, 283, 530, 570
SfaNI GCATC 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 4 cut(s) 301, 410, 424, 506
SsiI CCGC 1 cut(s) 217
SspI AATATT 1 cut(s) 456
StyI CCWWGG 1 cut(s) 138
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 294, 353
TasI AATT 4 cut(s) 301, 410, 424, 506
TfiI GAWTC 2 cut(s) 442, 493
Tru1I TTAA 2 cut(s) 95, 237
Tru9I TTAA 2 cut(s) 95, 237
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 32, 532
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 4 cut(s) 95, 173, 403, 516
TspGWI ACGGA 1 cut(s) 537
Van91I CCANNNNNTGG 1 cut(s) 190
XapI RAATTY 3 cut(s) 301, 410, 506
XmnI GAANNNNTTC 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.