Rh6BG111400

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000253
Physical Location & Seq
Forward (+)
17427994 .. 17436121
8128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG111400.1

Sequence Viewer

Length: 777 bp
ATGCTGAAGTGTAAGAAGGACTGGGGTGAAGACTTCTGCTTTCGAGGTGGGGCCGTATTTGAGCATGGCATTCTAGAATGGACGGAAACCACCCTAACTGACTTTGAAGAGACATTAGACAAAGCCAGTATCTTTGGTGCAGTTGCTGTTTCCCGTTATCCATATAAGTATTGCAGTAATGTGTGGAGGGCATTCTGTGAGCTATGGGGGCCTTTAACAAACACTTTTCACCATGAAGATGGGGAAATGAGCATCTCTTTGGATGATTTAAATGTTATTGGAGGATTGCCAGTTTCAGGAGAACCATACGAAGAATTCGTTCCTCCAAACAAAGATTTGGTGAAGATAACTAAAGTTTGGCGAATCCTCAAATTAACTAAAGAGATAATGACTACCGGAAAGCTATCCAAGTTGGAGCACTTTGAAACAGATGAAAAGGTATTGTTCGTGGATAGTGGTGACCCATGGAATCCCCGGCCTGCAACGGTAACCAAGGTCATGAAGATGCTTGAGGGCATTCATAGGAATGTTGTCCTGCTGCCACATTTCAGGCACCCTTTATTTGAGGTTCCACAGTTTACCTGGTCTGTAGAGTGGAGTACCTTTGGTGATGGATTTCACTATTTCTTCTATACATTGAAGAAGGGAAGAAGATCACCAGATAATAAACGATCGAGTGATGAGAAGTTAGAGAGGCCATCCATAAATCTTTATCAAGATGAATTAGAGGGCGGAGACTTCATTTTCCGAACCAATTTGGATGAGCTCAGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_31

Protein Analysis

258

Amino Acids

29.93

Weight (kDa)

5.35

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 44 - 104 3.6e-10 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 552
AciI CCGC 1 cut(s) 732
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 1 cut(s) 601
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 3 cut(s) 107, 425, 640
AjnI CCWGG 1 cut(s) 581
AluBI AGCT 4 cut(s) 202, 403, 766, 771
AluI AGCT 4 cut(s) 202, 403, 766, 771
Alw21I GWGCWC 2 cut(s) 420, 768
Alw26I GTCTC 2 cut(s) 104, 729
AlwNI CAGNNNCTG 1 cut(s) 146
AoxI GGCC 4 cut(s) 51, 209, 476, 695
ApeKI GCWGC 1 cut(s) 538
ApoI RAATTY 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 51, 209
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 6 cut(s) 38, 221, 352, 470, 620, 648
BanI GGYRCC 1 cut(s) 552
BanII GRGCYC 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 420, 768
BbvI GCAGC 1 cut(s) 525
BccI CCATC 3 cut(s) 233, 605, 706
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 583
BcnI CCSGG 1 cut(s) 475
BcoDI GTCTC 2 cut(s) 104, 729
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 588
BisI GCNGC 1 cut(s) 539
BlpI GCTNAGC 1 cut(s) 767
BlsI GCNGC 1 cut(s) 540
Bme1390I CCNGG 2 cut(s) 475, 583
BmgT120I GGNCC 2 cut(s) 51, 209
BmiI GGNNCC 4 cut(s) 52, 210, 554, 570
BmrFI CCNGG 2 cut(s) 475, 583
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 261, 495
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 1 cut(s) 755
Bpu1102I GCTNAGC 1 cut(s) 767
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 475
BsaJI CCNNGG 3 cut(s) 464, 473, 492
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 3 cut(s) 26, 126, 290
BseBI CCWGG 1 cut(s) 583
BseDI CCNNGG 3 cut(s) 464, 473, 492
BseGI GGATG 3 cut(s) 268, 698, 766
BseLI CCNNNNNNNGG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 26, 126, 290
BseXI GCAGC 1 cut(s) 525
BsgI GTGCAG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 674
BshFI GGCC 4 cut(s) 53, 211, 478, 697
BshNI GGYRCC 1 cut(s) 552
BsiEI CGRYCG 1 cut(s) 674
BsiHKAI GWGCWC 2 cut(s) 420, 768
BsiSI CCGG 2 cut(s) 396, 475
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 2 cut(s) 104, 729
BsmI GAATGC 3 cut(s) 69, 191, 516
BsnI GGCC 4 cut(s) 53, 211, 478, 697
Bsp1286I GDGCHC 2 cut(s) 420, 768
Bsp143I GATC 2 cut(s) 653, 671
Bsp1720I GCTNAGC 1 cut(s) 767
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 1 cut(s) 732
BspANI GGCC 4 cut(s) 53, 211, 478, 697
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 4 cut(s) 52, 210, 554, 570
BspT107I GGYRCC 1 cut(s) 552
BsrI ACTGG 3 cut(s) 26, 126, 290
BssECI CCNNGG 3 cut(s) 464, 473, 492
BssMI GATC 2 cut(s) 653, 671
BssT1I CCWWGG 2 cut(s) 464, 492
Bst2UI CCWGG 1 cut(s) 583
Bst4CI ACNGT 2 cut(s) 487, 576
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 2 cut(s) 767, 774
BstDSI CCRYGG 1 cut(s) 464
BstEII GGTNACC 2 cut(s) 458, 487
BstF5I GGATG 3 cut(s) 268, 698, 766
BstKTI GATC 2 cut(s) 656, 674
BstMAI GTCTC 2 cut(s) 104, 729
BstMBI GATC 2 cut(s) 653, 671
BstMCI CGRYCG 1 cut(s) 674
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 583
BstPI GGTNACC 2 cut(s) 458, 487
BstSCI CCNGG 2 cut(s) 473, 581
BstSFI CTRYAG 1 cut(s) 588
BstV1I GCAGC 1 cut(s) 525
BstV2I GAAGAC 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 239
BsuRI GGCC 4 cut(s) 53, 211, 478, 697
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 3 cut(s) 268, 698, 766
Cac8I GCNNGC 1 cut(s) 480
CaiI CAGNNNCTG 1 cut(s) 146
CciI TCATGA 1 cut(s) 498
Cfr13I GGNCC 2 cut(s) 51, 209
CsiI ACCWGGT 1 cut(s) 581
Csp6I GTAC 1 cut(s) 600
CviAII CATG 4 cut(s) 65, 233, 465, 499
CviJI RGCY 9 cut(s) 53, 125, 202, 211, 403, 478, 697, 766, 771
CviKI_1 RGCY 9 cut(s) 53, 125, 202, 211, 403, 478, 697, 766, 771
CviQI GTAC 1 cut(s) 600
DdeI CTNAG 2 cut(s) 767, 774
DpnI GATC 2 cut(s) 655, 673
DpnII GATC 2 cut(s) 653, 671
DraI TTTAAA 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 1 cut(s) 747
Ecl136II GAGCTC 1 cut(s) 766
Eco130I CCWWGG 2 cut(s) 464, 492
Eco24I GRGCYC 1 cut(s) 768
Eco53kI GAGCTC 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 26
Eco91I GGTNACC 2 cut(s) 458, 487
EcoICRI GAGCTC 1 cut(s) 766
EcoO109I RGGNCCY 1 cut(s) 209
EcoO65I GGTNACC 2 cut(s) 458, 487
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 581
EcoT14I CCWWGG 2 cut(s) 464, 492
EcoT38I GRGCYC 1 cut(s) 768
ErhI CCWWGG 2 cut(s) 464, 492
FaeI CATG 4 cut(s) 68, 236, 468, 502
FatI CATG 4 cut(s) 64, 232, 464, 498
Fnu4HI GCNGC 1 cut(s) 539
FokI GGATG 3 cut(s) 275, 685, 773
FriOI GRGCYC 1 cut(s) 768
Fsp4HI GCNGC 1 cut(s) 539
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 539
HaeIII GGCC 4 cut(s) 53, 211, 478, 697
HapII CCGG 2 cut(s) 396, 475
Hin1II CATG 4 cut(s) 68, 236, 468, 502
HinfI GANTC 2 cut(s) 363, 469
HpaII CCGG 2 cut(s) 396, 475
HphI GGTGA 6 cut(s) 38, 221, 352, 470, 620, 648
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 1 cut(s) 749
Hpy188III TCNNGA 4 cut(s) 74, 297, 499, 716
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 2 cut(s) 10, 637
HpyCH4III ACNGT 2 cut(s) 487, 576
HpyCH4V TGCA 3 cut(s) 140, 174, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 2 cut(s) 767, 774
Hsp92II CATG 4 cut(s) 68, 236, 468, 502
Kzo9I GATC 2 cut(s) 653, 671
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 1 cut(s) 525
LweI GCATC 2 cut(s) 261, 495
MabI ACCWGGT 1 cut(s) 581
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 2 cut(s) 458, 487
MalI GATC 2 cut(s) 655, 673
MboI GATC 2 cut(s) 653, 671
MhlI GDGCHC 2 cut(s) 420, 768
MluCI AATT 4 cut(s) 314, 371, 722, 754
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 9 cut(s) 38, 180, 275, 333, 377, 505, 559, 687, 721
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 3 cut(s) 215, 269, 374
MslI CAYNNNNRTG 3 cut(s) 237, 503, 525
MspI CCGG 2 cut(s) 396, 475
MspR9I CCNGG 2 cut(s) 475, 583
Mva1269I GAATGC 3 cut(s) 69, 191, 516
MvaI CCWGG 1 cut(s) 583
MwoI GCNNNNNNNGC 1 cut(s) 208
NciI CCSGG 1 cut(s) 475
NcoI CCATGG 1 cut(s) 464
NdeII GATC 2 cut(s) 653, 671
NlaIII CATG 4 cut(s) 68, 236, 468, 502
NlaIV GGNNCC 4 cut(s) 52, 210, 554, 570
NmuCI GTSAC 1 cut(s) 458
PagI TCATGA 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 3 cut(s) 69, 191, 516
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 2 cut(s) 363, 469
PkrI GCNGC 1 cut(s) 540
Ple19I CGATCG 1 cut(s) 674
Psp124BI GAGCTC 1 cut(s) 768
Psp6I CCWGG 1 cut(s) 581
PspEI GGTNACC 2 cut(s) 458, 487
PspGI CCWGG 1 cut(s) 581
PspN4I GGNNCC 4 cut(s) 52, 210, 554, 570
PspPI GGNCC 2 cut(s) 51, 209
PstNI CAGNNNCTG 1 cut(s) 146
PvuI CGATCG 1 cut(s) 674
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
RseI CAYNNNNRTG 3 cut(s) 237, 503, 525
SacI GAGCTC 1 cut(s) 768
SaqAI TTAA 3 cut(s) 215, 269, 374
SatI GCNGC 1 cut(s) 539
Sau3AI GATC 2 cut(s) 653, 671
Sau96I GGNCC 2 cut(s) 51, 209
ScrFI CCNGG 2 cut(s) 475, 583
SduI GDGCHC 2 cut(s) 420, 768
SexAI ACCWGGT 1 cut(s) 581
SfaNI GCATC 2 cut(s) 261, 495
SfcI CTRYAG 1 cut(s) 588
SmiI ATTTAAAT 1 cut(s) 270
SmiMI CAYNNNNRTG 3 cut(s) 237, 503, 525
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 4 cut(s) 314, 371, 722, 754
SsiI CCGC 1 cut(s) 732
SspMI CTAG 1 cut(s) 74
SstI GAGCTC 1 cut(s) 768
StyD4I CCNGG 2 cut(s) 473, 581
StyI CCWWGG 2 cut(s) 464, 492
SwaI ATTTAAAT 1 cut(s) 270
TaaI ACNGT 2 cut(s) 487, 576
TaqI TCGA 2 cut(s) 43, 674
TasI AATT 4 cut(s) 314, 371, 722, 754
TfiI GAWTC 2 cut(s) 363, 469
Tru1I TTAA 3 cut(s) 215, 269, 374
Tru9I TTAA 3 cut(s) 215, 269, 374
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 1 cut(s) 538
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 6 cut(s) 249, 447, 509, 515, 730, 735
TspGWI ACGGA 1 cut(s) 98
XapI RAATTY 1 cut(s) 314
XbaI TCTAGA 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.