Rh1CG072200

Alcohol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000253
Physical Location & Seq
Reverse (-)
14837891 .. 14838649
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG072200.1

Sequence Viewer

Length: 759 bp
ATGGCTACTCACCCTGTCGGTCCCGGCTCTTCCAACTCTTGTTTGCCTATCCACTACGTCATTGGTTGCCTTGGAGAATATTTTCCTTATCTGTACTCATCACTCTCTGATAAAGAGTTCCTAGCAGCGTACCCTCGTTTGGCCAGGTATGCAGGTGTTCAAGGCAGGAGTCTAAGCATTACAGAGGCTCGTATGGTTTTCAGGACCAATAAATTTGTCGTGCATCGCCATATCTATGTAGCTAGTGAAAAAGACCCTTTTTTGCTTGATGACGACGAATTGCCTGATGTGTTATTTGAGGTCCTCGTCTGTATGCGTTCTGCAGTGCTGCCTGTGCGAGTTGGCGAGAGTCTTTTCCTTGAGCCCTATTATCTGAATAGGTTTGTTCGTCAGTTTGGTCTTGATCAGAATGTTCCCTCCAACAAACTATCCTTTAGTGTTTCCAAAAGGCAGCAATGTGGTGTTGATGATCTGTTGAGGGCACAGATTATCCTGTATAGGAAGAACACTACCTCTCGTTTCTTTATCCCACATTCTTCTCGTTCTGGCCAGTGTACATGGTGGTACTGCAGATGGTGGTCGAGAGCTTGTACTCCTTACTTGGGGCTATCGGTGTCCAAAACTTTCACGACTTTGAACGAGCACCCTCCTGAAAAGCCACAACGTGTTTTTGTCGTACAGAAATTGAGAGAAATTTCTATTGGTCTGAAACAAGAGGTTAAAATCTCAGAGGTGGAAAAGTCTTGGGAAATCTTCTAG

Protein Analysis

252

Amino Acids

29.12

Weight (kDa)

9.04

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 40 - 194 1e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 143
AcoI YGGCCR 2 cut(s) 141, 547
AcsI RAATTY 2 cut(s) 212, 693
AdeI CACNNNGTG 1 cut(s) 665
AfaI GTAC 6 cut(s) 95, 131, 556, 566, 592, 678
AfiI CCNNNNNNNGG 2 cut(s) 139, 602
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 2 cut(s) 161, 637
AjnI CCWGG 1 cut(s) 143
AjuI GAANNNNNNNTTGG 2 cut(s) 684, 716
AluBI AGCT 2 cut(s) 242, 587
AluI AGCT 2 cut(s) 242, 587
Alw21I GWGCWC 1 cut(s) 645
AoxI GGCC 2 cut(s) 141, 547
ApeKI GCWGC 3 cut(s) 125, 328, 451
ApoI RAATTY 2 cut(s) 212, 693
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 3 cut(s) 20, 204, 301
AsuC2I CCSGG 1 cut(s) 24
AvaII GGWCC 3 cut(s) 20, 204, 301
BaeGI GKGCMC 1 cut(s) 484
BalI TGGCCA 2 cut(s) 143, 549
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 645
BbvI GCAGC 3 cut(s) 137, 315, 463
BccI CCATC 1 cut(s) 567
BciT130I CCWGG 1 cut(s) 145
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 1 cut(s) 24
BfaI CTAG 3 cut(s) 122, 243, 757
BfmI CTRYAG 2 cut(s) 321, 568
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 3 cut(s) 126, 329, 452
BlsI GCNGC 3 cut(s) 127, 330, 453
Bme1390I CCNGG 2 cut(s) 24, 145
Bme18I GGWCC 3 cut(s) 20, 204, 301
BmgT120I GGNCC 3 cut(s) 20, 204, 301
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 24, 145
BmsI GCATC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 602
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 461
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 139, 602
BseMI GCAATG 1 cut(s) 461
BseMII CTCAG 1 cut(s) 741
BseNI ACTGG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 3 cut(s) 137, 315, 463
BshFI GGCC 2 cut(s) 143, 549
BsiHKAI GWGCWC 1 cut(s) 645
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 139, 602
BsmFI GGGAC 1 cut(s) 6
BsnI GGCC 2 cut(s) 143, 549
Bsp1286I GDGCHC 3 cut(s) 366, 484, 645
Bsp1407I TGTACA 1 cut(s) 554
Bsp143I GATC 2 cut(s) 403, 469
BspANI GGCC 2 cut(s) 143, 549
BspCNI CTCAG 1 cut(s) 740
BspLI GGNNCC 1 cut(s) 22
BspMAI CTGCAG 2 cut(s) 325, 572
BspMI ACCTGC 1 cut(s) 143
BspQI GCTCTTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 461
BsrGI TGTACA 1 cut(s) 554
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 2 cut(s) 403, 469
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 34
BstAUI TGTACA 1 cut(s) 554
BstDEI CTNAG 2 cut(s) 173, 727
BstKTI GATC 2 cut(s) 406, 472
BstMBI GATC 2 cut(s) 403, 469
BstMWI GCNNNNNNNGC 2 cut(s) 149, 334
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 22, 143
BstSFI CTRYAG 2 cut(s) 321, 568
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 3 cut(s) 137, 315, 463
BsuRI GGCC 2 cut(s) 143, 549
BtgZI GCGATG 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 330, 557
BveI ACCTGC 1 cut(s) 143
Cfr13I GGNCC 3 cut(s) 20, 204, 301
Csp6I GTAC 6 cut(s) 94, 130, 555, 565, 591, 677
CviAII CATG 1 cut(s) 558
CviQI GTAC 6 cut(s) 94, 130, 555, 565, 591, 677
DdeI CTNAG 2 cut(s) 173, 727
DpnI GATC 2 cut(s) 405, 471
DpnII GATC 2 cut(s) 403, 469
DraIII CACNNNGTG 1 cut(s) 665
EaeI YGGCCR 2 cut(s) 141, 547
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 20, 204, 301
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 561
FaiI YATR 7 cut(s) 150, 194, 231, 237, 314, 498, 559
FaqI GGGAC 1 cut(s) 6
FatI CATG 1 cut(s) 557
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 3 cut(s) 126, 329, 452
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 126, 329, 452
FspBI CTAG 3 cut(s) 122, 243, 757
GluI GCNGC 3 cut(s) 126, 329, 452
HaeIII GGCC 2 cut(s) 143, 549
HapII CCGG 1 cut(s) 24
Hin1II CATG 1 cut(s) 561
HinfI GANTC 2 cut(s) 169, 349
HpaII CCGG 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 555
Hpy188I TCNGA 5 cut(s) 109, 375, 408, 708, 730
Hpy188III TCNNGA 5 cut(s) 202, 401, 582, 628, 650
Hpy8I GTNNAC 1 cut(s) 555
Hpy99I CGWCG 1 cut(s) 278
HpyCH4IV ACGT 2 cut(s) 57, 664
HpyCH4V TGCA 4 cut(s) 152, 223, 323, 570
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 334
HpyF3I CTNAG 2 cut(s) 173, 727
HpySE526I ACGT 2 cut(s) 57, 664
Hsp92II CATG 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 2 cut(s) 403, 469
LguI GCTCTTC 1 cut(s) 34
Lsp1109I GCAGC 3 cut(s) 137, 315, 463
LweI GCATC 1 cut(s) 232
MaeI CTAG 3 cut(s) 122, 243, 757
MaeII ACGT 2 cut(s) 57, 664
MalI GATC 2 cut(s) 405, 471
MboI GATC 2 cut(s) 403, 469
MboII GAAGA 4 cut(s) 21, 514, 528, 745
MhlI GDGCHC 3 cut(s) 366, 484, 645
MlsI TGGCCA 2 cut(s) 143, 549
MluCI AATT 4 cut(s) 212, 278, 683, 693
MluNI TGGCCA 2 cut(s) 143, 549
MlyI GAGTC 2 cut(s) 178, 358
MmeI TCCRAC 2 cut(s) 57, 444
Mox20I TGGCCA 2 cut(s) 143, 549
MroXI GAANNNNTTC 1 cut(s) 81
MscI TGGCCA 2 cut(s) 143, 549
MseI TTAA 1 cut(s) 720
MslI CAYNNNNRTG 1 cut(s) 234
Msp20I TGGCCA 2 cut(s) 143, 549
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 24, 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 149, 334
NciI CCSGG 1 cut(s) 24
NdeII GATC 2 cut(s) 403, 469
NlaIII CATG 1 cut(s) 561
NlaIV GGNNCC 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 81
PkrI GCNGC 3 cut(s) 127, 330, 453
PleI GAGTC 2 cut(s) 177, 357
PpsI GAGTC 2 cut(s) 177, 357
PpuMI RGGWCCY 1 cut(s) 301
Psp5II RGGWCCY 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 3 cut(s) 20, 204, 301
PspPPI RGGWCCY 1 cut(s) 301
PstI CTGCAG 2 cut(s) 325, 572
RsaI GTAC 6 cut(s) 95, 131, 556, 566, 592, 678
RsaNI GTAC 6 cut(s) 94, 130, 555, 565, 591, 677
RseI CAYNNNNRTG 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 3 cut(s) 126, 329, 452
Sau3AI GATC 2 cut(s) 403, 469
Sau96I GGNCC 3 cut(s) 20, 204, 301
SchI GAGTC 2 cut(s) 178, 358
ScrFI CCNGG 2 cut(s) 24, 145
SduI GDGCHC 3 cut(s) 366, 484, 645
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 2 cut(s) 321, 568
SinI GGWCC 3 cut(s) 20, 204, 301
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 4 cut(s) 212, 278, 683, 693
SspI AATATT 1 cut(s) 80
SspMI CTAG 3 cut(s) 122, 243, 757
StyD4I CCNGG 2 cut(s) 22, 143
StyI CCWWGG 1 cut(s) 70
TaiI ACGT 2 cut(s) 60, 667
TaqI TCGA 1 cut(s) 581
TaqII GACCGA 1 cut(s) 8
TasI AATT 4 cut(s) 212, 278, 683, 693
TatI WGTACW 3 cut(s) 93, 554, 590
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 2 cut(s) 330, 557
TseI GCWGC 3 cut(s) 125, 328, 451
TspRI CASTG 2 cut(s) 330, 557
VpaK11BI GGWCC 3 cut(s) 20, 204, 301
XapI RAATTY 2 cut(s) 212, 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 3 cut(s) 122, 243, 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.