Rh1BG091900

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000253
Physical Location & Seq
Forward (+)
14739996 .. 14743137
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG091900.1

Sequence Viewer

Length: 3060 bp
ATGGACGCACGTGGACACATATGTACCGAAAGAGCACTTAATAAGCGTGGGCAGGAAGCCATAGAGGGTCCAGAGTATAGACGGTCTTCACCCTTGAGTTCCGTGCAAGTTGATGCCTCAGTGAAAGACAAAATTACATGGGTCAGCGAAGTGCGAGTGCATTCTGGGTATCTCACATTCAATCATGATTCTGAAGATCAAGCCATAAAGACTTGTCGCTCCTACTGTGCTATATTTCCAGCTTGCACCCTTGAGAAAGTTAACAATGAAGAGGATGGGGATTCCTTCACTCACCAAGAGAACTTTTATCCTGTTCTTTATAAAATGTTGAAAGACAAACAAGACTGGGGAGTTCATCTCTACTTTCGGGGTCGTGCTACCTTTGAGCCTGGAGTGATGGAATGTACAGAATCAATATTAGATCATTTCAAGGGAAAACTGGACCAAGCAGGAATATATGGTGCTGTCGGTGTCTCTCGCTTCCCCTATCATTTGGGTGGGAACACATGGAGAGCATTCTGCGAACTCTGGAGTCCTTTGACTAATACTTTACACCATGGGAATGGAGAGATGAGTGTGTCCCTGTATGACTTGAAGCTTATTGGTGGCTTACCCATTCTGGGTGTCCAATATGAAGAATTCATTCCTGCTAATAAAGAATTACATCGTAATGGGAGATATCCGTATACCATTGTTGAGCTTCTGCGAATACATTCTGAACTGAGTGCACCCGATAGCAAGACGTATGTTTCCTGGAAGCAATGGCTTGCTCATTTTTATCGGGGGCGCTTGGTATACGCAGCCTATGGAGAGACTACATACCGGGGAGATCAAATGCAACAACATATGTTTATGGGTAGGAAACCAGCTCTGAGCATTTCAAAAGAAGGAGAACTTGCTGCTTTTCTAGCATTTTGGCTCAGCAGGTTTGTTTTGCCTTCTCATGACAATAGAATCAGACCTGAAACCTTTTATATGGCAGGCTTAATGGCCCAGGGGGCCAAGGTCTCTCTTGCACCGTCAGTTTTAGGCTATATTTACCATGGCCTTGGTGAGTTTGTAACTGATCCGAGAGGGCCTAAAGAGTCTCAAGGTTGTCTGCCTGTTCATTACGTGATCGGCTGGTTAGGAGAGCACTTTACTTGTTTGTATAGACGTCGAACTGCAAGTGACATACCTGCTCGTCACCCTCATTTGGCCAGGTATGCAGGTGTTGACGCTGAGAACTTAGACATCACCTCTGCTAGACTTGCTTTCAGAAGTAATGAATCCGTTGAATATCGTCCAAGTCCATACAATGAACAGAAAGGCTGCTTTTTGCTTGATGACAAAAGCTTGTCAAATGAACAATTTGAGTTCTTAGTCTTTATACGCTCCACCTTGCTACCTGTGAGGATGGGTAATGATCTTTGGCTGGAACCATACTACCCAAATAGGTTTGCACGGCAGTTTGGTTTTGACCAGGGAGTTCCATCAAACAAGTTATTATTTGCTGTTGAGAAAAGAAGGCAGTGTTGCATTGAAGAATTAGCAAAAGCACAGCATATGCTTCTCAGAGCTAACACCAGTGCCCGTTTTTATATCCCACGTTCCACTTATAACGGAACTTGCACTTGGATGTATTGTAGATGGTGGATGAGGGCATGTGCTCCATATTTGGGTCGATCCGTGTCTGCTGTTTATTTGACTCTAAAGAAGCAACCCCTGGAGAAAAGAAGCAATGTCTTTGTAATAAAATCTTTGAGAGAAGTCTCTTACAGTTTGCGAAGAGAAGTTTTGTTGACAGATGTTGGGGAAACGGATTCGACCACCCCTTTTAGGAAATCTTCCTCTGTAGGAGACAACAAGAGGAAGAGGGATTGTACCAGGTCTGATAATTCAGGGGGAAGAAACCTCAAGCAAGCCCATAAAGATGAGCGTAGTGATTTTGATGACGTTATTGCCGATAATGCTAACTTTCTTCAGAAAAGACATGTTCCAGATAAAGGCAATAGTACTTCTTATGGTGGCAGAACCAATGCTGCGAAAGAACAGAGAATGCAATCACAAGACCAGAAGTTGACATCTAGAGAAACAGAGTCAAATTCAAAAGGAGCACGCCTGCGGACCAGAGAGGTAGTGTTAAAATTGAAGGAACCAGAGCCACAGTCAAAGCCAAGGCAGAGAGAACCAGAGCTAAAAGAAAAGCACCCGGAGAAAAGGATTGCAGTTCCAGAGCCACGGTTAAATGAGCCAGAGCTGAAGTCATTATCTGGCGGTAATTCCAACTCTCCTAGCAGAACCACAGAACTTATTGGTTTAGATACTTGCTCATCTCAGAGTTTTTGTGAAGAAATCATCCCATTGATTGAGAGCCCGTTGTCTATATATCAGATCTTTGGCCCAACGATAAATGAGTATCGGCGAGATTTCATCATCAGTGAGATGCAAGACATTTTAAGTAAGCTGAGTTCTTCTGAATCTCCTAAAGAAGTACTTGTTCACCGTCAGGATATTAATTCTACAATTGCCCTTTTGACATCTATGATGGAAACTCTTGAGTCTGGCAGAAATGGGTTTGATTGGTTTGCCAAGACAGTTGATCAAGTTTTTGAGTTAGCATCTCAACTTTTGCAAGGAATGAGCAACATTGAGAAAGGTGCTGAAATTGATGCTGATCTTATCCAAGACTTAGCCCGTCGCCAAGAAGAGTGCCAAACTGCTAAGAAGACTCTTAATATGCAACTGTCAGACTTCAAAAAACAACTTGCAGATTTAGAAGCCACAGAGAAGAGTGTTAGTGAAGCAGAAAAGCAGGCTCATGAGGCAATGGAACGAGCTAAACAACTGAGAGCTACTTTTGAAGCTGCAAGAGAATCTCTTGAAGAGAAGATCAATGATTTGGAAAAATCTTCTGAAGAGCAAGACCAACTAGATGAGGAGCTGCGTCAACAAAGAATTCAAGCCCATGAAGATAAGCTTCCAGAATTTGAGGATGCGAAAGCCTCCTTCAAATCTCAGCAAGAGCAGTTTGCCAACTTAATTAATTCTTTGACATCATTTGGTGCTCAACCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1019

Amino Acids

116.44

Weight (kDa)

6.73

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 151 - 546 3e-38 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 321, 1599
AarI CACCTGC 1 cut(s) 1199
AatII GACGTC 1 cut(s) 1159
Acc36I ACCTGC 3 cut(s) 915, 1186, 1199
AccI GTMKAC 2 cut(s) 686, 795
AciI CCGC 2 cut(s) 2104, 2256
AclWI GGATC 2 cut(s) 1061, 1659
AcoI YGGCCR 1 cut(s) 1197
AcsI RAATTY 4 cut(s) 638, 2083, 2937, 2966
AcuI CTGAAG 4 cut(s) 213, 1946, 2261, 2916
AcvI CACGTG 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 1156
AfaI GTAC 5 cut(s) 25, 406, 1864, 1996, 2475
AfiI CCNNNNNNNGG 5 cut(s) 620, 1195, 1658, 1818, 1985
AflIII ACRYGT 1 cut(s) 1972
AjnI CCWGG 7 cut(s) 388, 752, 993, 1199, 1461, 1704, 1865
AjuI GAANNNNNNNTTGG 2 cut(s) 1597, 1629
Alw21I GWGCWC 6 cut(s) 37, 730, 1137, 1651, 2098, 3049
Alw26I GTCTC 6 cut(s) 478, 806, 1012, 1092, 1756, 1833
Alw44I GTGCAC 1 cut(s) 726
AlwI GGATC 2 cut(s) 1061, 1659
AoxI GGCC 6 cut(s) 990, 999, 1045, 1076, 1197, 2380
ApaLI GTGCAC 1 cut(s) 726
ApeKI GCWGC 6 cut(s) 800, 899, 1311, 2021, 2846, 2923
ApoI RAATTY 4 cut(s) 638, 2083, 2937, 2966
AseI ATTAAT 2 cut(s) 2496, 3024
Asp700I GAANNNNTTC 2 cut(s) 642, 712
AspLEI GCGC 1 cut(s) 789
AspS9I GGNCC 7 cut(s) 68, 442, 991, 999, 1076, 2106, 2381
AsuC2I CCSGG 2 cut(s) 824, 2192
AsuHPI GGTGA 6 cut(s) 81, 284, 1064, 1178, 1228, 2474
AvaII GGWCC 3 cut(s) 68, 442, 2106
BaeGI GKGCMC 2 cut(s) 730, 1573
BaeI ACNNNNGTAYC 2 cut(s) 7, 40
BalI TGGCCA 1 cut(s) 1199
BanII GRGCYC 1 cut(s) 2357
BbrPI CACGTG 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 78, 2714
Bbv12I GWGCWC 6 cut(s) 37, 730, 1137, 1651, 2098, 3049
BbvI GCAGC 6 cut(s) 812, 886, 1298, 2008, 2833, 2910
BccI CCATC 6 cut(s) 269, 391, 1390, 1480, 1623, 2521
BceAI ACGGC 1 cut(s) 1460
BciT130I CCWGG 7 cut(s) 390, 754, 995, 1201, 1463, 1706, 1867
BclI TGATCA 1 cut(s) 2581
BcnI CCSGG 2 cut(s) 824, 2192
BcoDI GTCTC 6 cut(s) 478, 806, 1012, 1092, 1756, 1833
BfaI CTAG 5 cut(s) 908, 1245, 2067, 2274, 2912
BfmI CTRYAG 1 cut(s) 1833
BfoI RGCGCY 1 cut(s) 790
BfuAI ACCTGC 3 cut(s) 915, 1186, 1199
BglI GCCNNNNNGGC 1 cut(s) 998
BglII AGATCT 1 cut(s) 2373
BisI GCNGC 6 cut(s) 801, 900, 1312, 2022, 2847, 2924
BlpI GCTNAGC 1 cut(s) 920
BlsI GCNGC 6 cut(s) 802, 901, 1313, 2023, 2848, 2925
BmcAI AGTACT 2 cut(s) 1996, 2475
Bme1390I CCNGG 9 cut(s) 390, 754, 824, 995, 1201, 1463, 1706, 1867, 2192
Bme18I GGWCC 3 cut(s) 68, 442, 2106
BmgT120I GGNCC 7 cut(s) 68, 442, 991, 999, 1076, 2106, 2381
BmiI GGNNCC 4 cut(s) 69, 1000, 1419, 2136
BmrFI CCNGG 9 cut(s) 390, 754, 824, 995, 1201, 1463, 1706, 1867, 2192
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 5 cut(s) 103, 2415, 2609, 2641, 2965
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 2 cut(s) 78, 2714
BplI GAGNNNNNCTC 2 cut(s) 342, 374
BpmI CTGGAG 3 cut(s) 411, 550, 1727
Bpu1102I GCTNAGC 1 cut(s) 920
BpuEI CTTGAG 5 cut(s) 115, 272, 1074, 1880, 2558
BpuMI CCSGG 2 cut(s) 824, 2192
BsaAI YACGTR 2 cut(s) 11, 1114
BsaBI GATNNNNATC 1 cut(s) 2655
BsaHI GRCGYC 1 cut(s) 1156
BsaI GGTCTC 1 cut(s) 1012
Bsc4I CCNNNNNNNGG 5 cut(s) 620, 1195, 1658, 1818, 1985
Bse1I ACTGG 3 cut(s) 350, 444, 1566
Bse3DI GCAATG 3 cut(s) 767, 1726, 2814
Bse8I GATNNNNATC 1 cut(s) 2655
BseBI CCWGG 7 cut(s) 390, 754, 995, 1201, 1463, 1706, 1867
BseGI GGATG 6 cut(s) 280, 1401, 1623, 1641, 2337, 2980
BseJI GATNNNNATC 1 cut(s) 2655
BseLI CCNNNNNNNGG 5 cut(s) 620, 1195, 1658, 1818, 1985
BseMI GCAATG 3 cut(s) 767, 1726, 2814
BseNI ACTGG 3 cut(s) 350, 444, 1566
BseRI GAGGAG 1 cut(s) 2933
BseSI GKGCMC 2 cut(s) 730, 1573
BseXI GCAGC 6 cut(s) 812, 886, 1298, 2008, 2833, 2910
BshFI GGCC 6 cut(s) 992, 1001, 1047, 1078, 1199, 2382
BsiHKAI GWGCWC 6 cut(s) 37, 730, 1137, 1651, 2098, 3049
BsiSI CCGG 2 cut(s) 823, 2192
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 5 cut(s) 620, 1195, 1658, 1818, 1985
BsmAI GTCTC 6 cut(s) 478, 806, 1012, 1092, 1756, 1833
BsmFI GGGAC 1 cut(s) 565
BsmI GAATGC 3 cut(s) 160, 515, 2043
BsnI GGCC 6 cut(s) 992, 1001, 1047, 1078, 1199, 2382
Bso31I GGTCTC 1 cut(s) 1012
Bsp1286I GDGCHC 8 cut(s) 37, 730, 1137, 1573, 1651, 2098, 2357, 3049
Bsp1407I TGTACA 1 cut(s) 404
Bsp1720I GCTNAGC 1 cut(s) 920
Bsp19I CCATGG 2 cut(s) 556, 1042
BspACI CCGC 2 cut(s) 2104, 2256
BspANI GGCC 6 cut(s) 992, 1001, 1047, 1078, 1199, 2382
BspHI TCATGA 3 cut(s) 184, 943, 2800
BspLI GGNNCC 4 cut(s) 69, 1000, 1419, 2136
BspMI ACCTGC 3 cut(s) 915, 1186, 1199
BspPI GGATC 2 cut(s) 1061, 1659
BspQI GCTCTTC 1 cut(s) 2892
BspTNI GGTCTC 1 cut(s) 1012
BsrDI GCAATG 3 cut(s) 767, 1726, 2814
BsrGI TGTACA 1 cut(s) 404
BsrI ACTGG 3 cut(s) 350, 444, 1566
BssNAI GTATAC 2 cut(s) 687, 796
BssNI GRCGYC 1 cut(s) 1156
BssT1I CCWWGG 5 cut(s) 556, 1002, 1042, 1048, 2156
Bst1107I GTATAC 2 cut(s) 687, 796
Bst2UI CCWGG 7 cut(s) 390, 754, 995, 1201, 1463, 1706, 1867
Bst4CI ACNGT 9 cut(s) 84, 227, 1020, 1760, 2148, 2223, 2486, 2578, 2727
Bst6I CTCTTC 7 cut(s) 264, 1762, 1847, 2682, 2765, 2859, 2892
BstACI GRCGYC 1 cut(s) 1156
BstAUI TGTACA 1 cut(s) 404
BstBAI YACGTR 2 cut(s) 11, 1114
BstC8I GCNNGC 7 cut(s) 244, 768, 982, 1902, 2098, 2102, 2796
BstDSI CCRYGG 3 cut(s) 556, 1042, 2219
BstF5I GGATG 6 cut(s) 280, 1401, 1623, 1641, 2337, 2980
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 1 cut(s) 789
BstMAI GTCTC 6 cut(s) 478, 806, 1012, 1092, 1756, 1833
BstMWI GCNNNNNNNGC 6 cut(s) 908, 998, 1205, 1250, 1949, 2804
BstNI CCWGG 7 cut(s) 390, 754, 995, 1201, 1463, 1706, 1867
BstNSI RCATGY 2 cut(s) 1647, 1976
BstSCI CCNGG 9 cut(s) 388, 752, 822, 993, 1199, 1461, 1704, 1865, 2190
BstSFI CTRYAG 1 cut(s) 1833
BstSLI GKGCMC 2 cut(s) 730, 1573
BstV1I GCAGC 6 cut(s) 812, 886, 1298, 2008, 2833, 2910
BstV2I GAAGAC 2 cut(s) 78, 2714
BstX2I RGATCY 1 cut(s) 2373
BstXI CCANNNNNNTGG 2 cut(s) 563, 1049
BstYI RGATCY 1 cut(s) 2373
BstZ17I GTATAC 2 cut(s) 687, 796
BsuRI GGCC 6 cut(s) 992, 1001, 1047, 1078, 1199, 2382
BtgI CCRYGG 3 cut(s) 556, 1042, 2219
BtsCI GGATG 6 cut(s) 280, 1401, 1623, 1641, 2337, 2980
BtsI GCAGTG 1 cut(s) 1517
BtsIMutI CAGTG 4 cut(s) 126, 1517, 1573, 2425
BveI ACCTGC 3 cut(s) 915, 1186, 1199
Cac8I GCNNGC 7 cut(s) 244, 768, 982, 1902, 2098, 2102, 2796
CciI TCATGA 3 cut(s) 184, 943, 2800
CfoI GCGC 1 cut(s) 789
Cfr13I GGNCC 7 cut(s) 68, 442, 991, 999, 1076, 2106, 2381
CseI GACGC 3 cut(s) 14, 1226, 2915
CsiI ACCWGGT 1 cut(s) 1865
Csp6I GTAC 5 cut(s) 24, 405, 1863, 1995, 2474
CviQI GTAC 5 cut(s) 24, 405, 1863, 1995, 2474
EaeI YGGCCR 1 cut(s) 1197
Eam1104I CTCTTC 7 cut(s) 264, 1762, 1847, 2682, 2765, 2859, 2892
EarI CTCTTC 7 cut(s) 264, 1762, 1847, 2682, 2765, 2859, 2892
Eco130I CCWWGG 5 cut(s) 556, 1002, 1042, 1048, 2156
Eco24I GRGCYC 1 cut(s) 2357
Eco31I GGTCTC 1 cut(s) 1012
Eco32I GATATC 1 cut(s) 680
Eco47I GGWCC 3 cut(s) 68, 442, 2106
Eco57I CTGAAG 4 cut(s) 213, 1946, 2261, 2916
Eco72I CACGTG 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 1076
EcoRI GAATTC 2 cut(s) 638, 2937
EcoRII CCWGG 7 cut(s) 388, 752, 993, 1199, 1461, 1704, 1865
EcoRV GATATC 1 cut(s) 680
EcoT14I CCWWGG 5 cut(s) 556, 1002, 1042, 1048, 2156
EcoT38I GRGCYC 1 cut(s) 2357
ErhI CCWWGG 5 cut(s) 556, 1002, 1042, 1048, 2156
FalI AAGNNNNNCTT 6 cut(s) 879, 911, 2460, 2492, 2943, 2975
FaqI GGGAC 1 cut(s) 565
FauNDI CATATG 3 cut(s) 20, 846, 1545
FbaI TGATCA 1 cut(s) 2581
FblI GTMKAC 2 cut(s) 686, 795
Fnu4HI GCNGC 6 cut(s) 801, 900, 1312, 2022, 2847, 2924
FokI GGATG 6 cut(s) 287, 1408, 1630, 1648, 2324, 2987
FriOI GRGCYC 1 cut(s) 2357
Fsp4HI GCNGC 6 cut(s) 801, 900, 1312, 2022, 2847, 2924
FspBI CTAG 5 cut(s) 908, 1245, 2067, 2274, 2912
GlaI GCGC 1 cut(s) 788
GluI GCNGC 6 cut(s) 801, 900, 1312, 2022, 2847, 2924
GsuI CTGGAG 3 cut(s) 411, 550, 1727
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 6 cut(s) 992, 1001, 1047, 1078, 1199, 2382
HapII CCGG 2 cut(s) 823, 2192
HgaI GACGC 3 cut(s) 14, 1226, 2915
HhaI GCGC 1 cut(s) 789
Hin1I GRCGYC 1 cut(s) 1156
Hin6I GCGC 1 cut(s) 787
HinP1I GCGC 1 cut(s) 787
HincII GTYRAC 5 cut(s) 262, 1216, 1782, 2061, 2930
HindII GTYRAC 5 cut(s) 262, 1216, 1782, 2061, 2930
HindIII AAGCTT 3 cut(s) 596, 1333, 2957
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 2 cut(s) 823, 2192
HphI GGTGA 6 cut(s) 81, 284, 1064, 1178, 1228, 2474
Hpy99I CGWCG 2 cut(s) 1161, 2682
HpyAV CCTTC 6 cut(s) 295, 881, 948, 1500, 2125, 2998
HpyCH4III ACNGT 9 cut(s) 84, 227, 1020, 1760, 2148, 2223, 2486, 2578, 2727
HpyCH4IV ACGT 6 cut(s) 10, 743, 1113, 1156, 1588, 1935
HpyF10VI GCNNNNNNNGC 6 cut(s) 908, 998, 1205, 1250, 1949, 2804
HpySE526I ACGT 6 cut(s) 10, 743, 1113, 1156, 1588, 1935
Hsp92I GRCGYC 1 cut(s) 1156
HspAI GCGC 1 cut(s) 787
Ksp22I TGATCA 1 cut(s) 2581
KspAI GTTAAC 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 2892
LmnI GCTCC 5 cut(s) 224, 1379, 1654, 2093, 2920
Lsp1109I GCAGC 6 cut(s) 812, 886, 1298, 2008, 2833, 2910
LweI GCATC 5 cut(s) 103, 2415, 2609, 2641, 2965
MabI ACCWGGT 1 cut(s) 1865
MaeI CTAG 5 cut(s) 908, 1245, 2067, 2274, 2912
MaeII ACGT 6 cut(s) 10, 743, 1113, 1156, 1588, 1935
MaeIII GTNAC 3 cut(s) 1060, 1169, 1184
MfeI CAATTG 1 cut(s) 2505
MflI RGATCY 1 cut(s) 2373
MhlI GDGCHC 8 cut(s) 37, 730, 1137, 1573, 1651, 2098, 2357, 3049
MlsI TGGCCA 1 cut(s) 1199
MluNI TGGCCA 1 cut(s) 1199
MlyI GAGTC 6 cut(s) 541, 1094, 1681, 2087, 2549, 2704
MmeI TCCRAC 1 cut(s) 2289
Mox20I TGGCCA 1 cut(s) 1199
MroXI GAANNNNTTC 2 cut(s) 642, 712
MscI TGGCCA 1 cut(s) 1199
MslI CAYNNNNRTG 5 cut(s) 495, 561, 669, 1616, 1911
Msp20I TGGCCA 1 cut(s) 1199
MspI CCGG 2 cut(s) 823, 2192
MspR9I CCNGG 9 cut(s) 390, 754, 824, 995, 1201, 1463, 1706, 1867, 2192
MunI CAATTG 1 cut(s) 2505
Mva1269I GAATGC 3 cut(s) 160, 515, 2043
MvaI CCWGG 7 cut(s) 390, 754, 995, 1201, 1463, 1706, 1867
MwoI GCNNNNNNNGC 6 cut(s) 908, 998, 1205, 1250, 1949, 2804
NciI CCSGG 2 cut(s) 824, 2192
NcoI CCATGG 2 cut(s) 556, 1042
NdeI CATATG 3 cut(s) 20, 846, 1545
NlaIV GGNNCC 4 cut(s) 69, 1000, 1419, 2136
NmuCI GTSAC 2 cut(s) 1169, 1184
NspI RCATGY 2 cut(s) 1647, 1976
PacI TTAATTAA 1 cut(s) 3024
PagI TCATGA 3 cut(s) 184, 943, 2800
PaqCI CACCTGC 1 cut(s) 1199
PasI CCCWGGG 1 cut(s) 994
PciI ACATGT 1 cut(s) 1972
PciSI GCTCTTC 1 cut(s) 2892
PcsI WCGNNNNNNNCGW 1 cut(s) 1941
PctI GAATGC 3 cut(s) 160, 515, 2043
PdmI GAANNNNTTC 2 cut(s) 642, 712
PfeI GAWTC 8 cut(s) 188, 281, 410, 954, 1268, 1802, 2459, 2855
PfoI TCCNGGA 1 cut(s) 752
PkrI GCNGC 6 cut(s) 802, 901, 1313, 2023, 2848, 2925
PleI GAGTC 6 cut(s) 540, 1093, 1681, 2086, 2548, 2704
PmaCI CACGTG 1 cut(s) 11
PmlI CACGTG 1 cut(s) 11
PpsI GAGTC 6 cut(s) 540, 1093, 1681, 2086, 2548, 2704
Ppu21I YACGTR 2 cut(s) 11, 1114
PscI ACATGT 1 cut(s) 1972
PshBI ATTAAT 2 cut(s) 2496, 3024
PsiI TTATAA 2 cut(s) 321, 1599
Psp6I CCWGG 7 cut(s) 388, 752, 993, 1199, 1461, 1704, 1865
PspCI CACGTG 1 cut(s) 11
PspGI CCWGG 7 cut(s) 388, 752, 993, 1199, 1461, 1704, 1865
PspN4I GGNNCC 4 cut(s) 69, 1000, 1419, 2136
PspPI GGNCC 7 cut(s) 68, 442, 991, 999, 1076, 2106, 2381
PsrI GAACNNNNNNTAC 2 cut(s) 2434, 2466
PsuI RGATCY 1 cut(s) 2373
RsaI GTAC 5 cut(s) 25, 406, 1864, 1996, 2475
RsaNI GTAC 5 cut(s) 24, 405, 1863, 1995, 2474
RseI CAYNNNNRTG 5 cut(s) 495, 561, 669, 1616, 1911
SapI GCTCTTC 1 cut(s) 2892
SatI GCNGC 6 cut(s) 801, 900, 1312, 2022, 2847, 2924
Sau96I GGNCC 7 cut(s) 68, 442, 991, 999, 1076, 2106, 2381
ScaI AGTACT 2 cut(s) 1996, 2475
SchI GAGTC 6 cut(s) 541, 1094, 1681, 2087, 2549, 2704
ScrFI CCNGG 9 cut(s) 390, 754, 824, 995, 1201, 1463, 1706, 1867, 2192
SduI GDGCHC 8 cut(s) 37, 730, 1137, 1573, 1651, 2098, 2357, 3049
SexAI ACCWGGT 1 cut(s) 1865
SfaNI GCATC 5 cut(s) 103, 2415, 2609, 2641, 2965
SfcI CTRYAG 1 cut(s) 1833
SfiI GGCCNNNNNGGCC 1 cut(s) 998
SinI GGWCC 3 cut(s) 68, 442, 2106
SmiMI CAYNNNNRTG 5 cut(s) 495, 561, 669, 1616, 1911
SmlI CTYRAG 5 cut(s) 94, 251, 1089, 1895, 2537
SmoI CTYRAG 5 cut(s) 94, 251, 1089, 1895, 2537
SsiI CCGC 2 cut(s) 2104, 2256
SspI AATATT 1 cut(s) 417
SspMI CTAG 5 cut(s) 908, 1245, 2067, 2274, 2912
StyD4I CCNGG 9 cut(s) 388, 752, 822, 993, 1199, 1461, 1704, 1865, 2190
StyI CCWWGG 5 cut(s) 556, 1002, 1042, 1048, 2156
TaaI ACNGT 9 cut(s) 84, 227, 1020, 1760, 2148, 2223, 2486, 2578, 2727
TaiI ACGT 6 cut(s) 13, 746, 1116, 1159, 1591, 1938
TaqI TCGA 3 cut(s) 1159, 1663, 1805
TatI WGTACW 3 cut(s) 404, 1994, 2473
TfiI GAWTC 8 cut(s) 188, 281, 410, 954, 1268, 1802, 2459, 2855
TscAI CASTG 4 cut(s) 126, 1517, 1573, 2425
TseFI GTSAC 2 cut(s) 1169, 1184
TseI GCWGC 6 cut(s) 800, 899, 1311, 2021, 2846, 2923
Tsp45I GTSAC 2 cut(s) 1169, 1184
TspGWI ACGGA 6 cut(s) 91, 672, 1261, 1617, 1657, 1814
TspRI CASTG 4 cut(s) 126, 1517, 1573, 2425
VneI GTGCAC 1 cut(s) 726
VpaK11BI GGWCC 3 cut(s) 68, 442, 2106
VspI ATTAAT 2 cut(s) 2496, 3024
XapI RAATTY 4 cut(s) 638, 2083, 2937, 2966
XbaI TCTAGA 1 cut(s) 2066
XceI RCATGY 2 cut(s) 1647, 1976
XmiI GTMKAC 2 cut(s) 686, 795
XmnI GAANNNNTTC 2 cut(s) 642, 712
XspI CTAG 5 cut(s) 908, 1245, 2067, 2274, 2912
ZraI GACGTC 1 cut(s) 1157
ZrmI AGTACT 2 cut(s) 1996, 2475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.