Rh4BG129800

Alcohol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000253
Physical Location & Seq
Forward (+)
21896107 .. 21896668
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG129800.1

Sequence Viewer

Length: 399 bp
ATGGCTACTCACCCTACCGGTCCCGGCTCTTCCAACTCTTGTTTGCCTATGCACTACGTCATTGGCTGGCTTGGAGAATATTTTCCTTATCTGTACTCATCACTAACTGATAAAGAGTTCCCAACAGGGTATCCTCGTTTGGCCAGGTATGCAGGTGTTCCAGTGCTACCGGTGCAAGTTGGCAAGAGTCTTTTCCTTGAGCTCTATTATCCGAACAGGTTTGCTCGTCAGTTTGGTCTCGATCAGAGTGTTCCCTCTAACAAACTATCCTTTGGTGTTTCCAAAAGGCAGCAGTGTGGTGTTGAGGATCTGCTGAGGGCACAGATTATCTTGTATAGGAAGAACACTACCTCTCGTTTCTTTATCCCATGTTCTTCTCGTTCTGGACAGTGTACATGA

Protein Analysis

132

Amino Acids

14.87

Weight (kDa)

9.44

Isoelectric Point (pI)

59.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 65 - 91 4.5e-06 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 141
AfaI GTAC 2 cut(s) 95, 394
AgeI ACCGGT 2 cut(s) 17, 169
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 315
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 289
AsiGI ACCGGT 2 cut(s) 17, 169
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 322
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 145
BciVI GTATCC 1 cut(s) 141
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 143
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 24, 145
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 24, 145
Bpu10I CCTNAGC 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 242
BsaWI WCCGGW 2 cut(s) 17, 169
Bse118I RCCGGY 2 cut(s) 17, 169
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 1 cut(s) 143
BshTI ACCGGT 2 cut(s) 17, 169
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 3 cut(s) 18, 24, 170
BslFI GGGAC 1 cut(s) 6
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 6
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 204, 322
Bsp1407I TGTACA 1 cut(s) 392
Bsp143I GATC 2 cut(s) 241, 307
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 315
BspQI GCTCTTC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 242
BsrFI RCCGGY 2 cut(s) 17, 169
BsrGI TGTACA 1 cut(s) 392
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 2 cut(s) 17, 169
BssMI GATC 2 cut(s) 241, 307
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 390
Bst6I CTCTTC 1 cut(s) 34
BstAUI TGTACA 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 314
BstKTI GATC 2 cut(s) 244, 310
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 241, 307
BstMWI GCNNNNNNNGC 2 cut(s) 149, 172
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 2 cut(s) 22, 143
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuI GTATCC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 299
BtsIMutI CAGTG 3 cut(s) 168, 299, 395
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 68
Cfr10I RCCGGY 2 cut(s) 17, 169
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 94, 393
CspAI ACCGGT 2 cut(s) 17, 169
CviAII CATG 2 cut(s) 369, 396
CviJI RGCY 6 cut(s) 5, 27, 66, 70, 143, 202
CviKI_1 RGCY 6 cut(s) 5, 27, 66, 70, 143, 202
CviQI GTAC 2 cut(s) 94, 393
DdeI CTNAG 1 cut(s) 314
DpnI GATC 2 cut(s) 243, 309
DpnII GATC 2 cut(s) 241, 307
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 2 cut(s) 372, 399
FaiI YATR 5 cut(s) 50, 150, 336, 370, 397
FaqI GGGAC 1 cut(s) 6
FatI CATG 2 cut(s) 368, 395
Fnu4HI GCNGC 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 290
HaeIII GGCC 1 cut(s) 143
HapII CCGG 3 cut(s) 18, 24, 170
Hin1II CATG 2 cut(s) 372, 399
HinfI GANTC 1 cut(s) 187
HpaII CCGG 3 cut(s) 18, 24, 170
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 2 cut(s) 213, 246
Hpy188III TCNNGA 2 cut(s) 239, 384
Hpy8I GTNNAC 1 cut(s) 393
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 52, 152, 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 172
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 372, 399
Kzo9I GATC 2 cut(s) 241, 307
LguI GCTCTTC 1 cut(s) 34
Lsp1109I GCAGC 1 cut(s) 301
MaeII ACGT 1 cut(s) 57
MalI GATC 2 cut(s) 243, 309
MboI GATC 2 cut(s) 241, 307
MboII GAAGA 3 cut(s) 21, 352, 366
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 204, 322
MlsI TGGCCA 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 5 cut(s) 144, 265, 298, 309, 361
Mox20I TGGCCA 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 81
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 3 cut(s) 18, 24, 170
MspR9I CCNGG 2 cut(s) 24, 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 149, 172
NciI CCSGG 1 cut(s) 24
NdeII GATC 2 cut(s) 241, 307
NlaIII CATG 2 cut(s) 372, 399
NlaIV GGNNCC 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 81
PinAI ACCGGT 2 cut(s) 17, 169
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 2 cut(s) 95, 394
RsaNI GTAC 2 cut(s) 94, 393
SacI GAGCTC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 34
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 2 cut(s) 241, 307
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 24, 145
SduI GDGCHC 2 cut(s) 204, 322
SetI ASST 6 cut(s) 60, 149, 157, 204, 221, 353
SinI GGWCC 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SspI AATATT 1 cut(s) 80
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 22, 143
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 240
TatI WGTACW 2 cut(s) 93, 392
TscAI CASTG 3 cut(s) 168, 299, 395
TseI GCWGC 1 cut(s) 289
TspRI CASTG 3 cut(s) 168, 299, 395
VpaK11BI GGWCC 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.