Rroxscaffold_5G00356290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000253
Physical Location & Seq
Reverse (-)
35500936 .. 35509338
8403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356290.1

Sequence Viewer

Length: 465 bp
ATGGTTAGGTCAACAGCCCATTGGAGATGGCTGTGGAGTGTTATCGGAGTGCTGGTGCTATGGCGACAACAAGAAGTTGGTGACCGTGACTACAGCTGCATTGTAGGGCAGCAGGACGAAGTGGAGGGTAGGTTGGCTGTGCTGATCTGCCTTCTACTTGGGCCAAGATTGCTTGGACCCGTCACCCTTCTCGTTAGGCTATTTGTTTTGGCCTCAATGGTTAAGTTGTCCCCAATCATCGTGTGTGATAGGACTTTGAACATGGGAGTCTTGATATTTCTAACTTATAGATTTGATCCTCATGCTCAAGACTATGTCATAAAGAATGTCCAATGTTATAGTGCTCGGTTTGATACTCACACATTGATGAAGGTGAACAATAATGAGGAAGGTGACTGTGAGTTACCAGTTCGAGAAGATTTTTACCCTGCCCTTCATAGAATGCTGATATGTAAGAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.82

Weight (kDa)

6.88

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 290
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 346
AlwI GGATC 1 cut(s) 290
AoxI GGCC 2 cut(s) 161, 210
ApeKI GCWGC 2 cut(s) 96, 109
AspS9I GGNCC 2 cut(s) 161, 176
AsuHPI GGTGA 4 cut(s) 92, 175, 385, 404
AvaII GGWCC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 83, 121
BccI CCATC 1 cut(s) 21
BfaI CTAG 1 cut(s) 463
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 2 cut(s) 97, 110
BlsI GCNGC 2 cut(s) 98, 111
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 161, 176
BmiI GGNNCC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 291
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 116, 146
Bse1I ACTGG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 83, 121
BshFI GGCC 2 cut(s) 163, 212
BsiHKAI GWGCWC 1 cut(s) 346
BslFI GGGAC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 2 cut(s) 163, 212
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 2 cut(s) 144, 295
BspANI GGCC 2 cut(s) 163, 212
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 407
BssMI GATC 2 cut(s) 144, 295
Bst4CI ACNGT 2 cut(s) 86, 398
BstEII GGTNACC 1 cut(s) 80
BstKTI GATC 2 cut(s) 147, 298
BstMBI GATC 2 cut(s) 144, 295
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 83, 121
BsuRI GGCC 2 cut(s) 163, 212
Cfr13I GGNCC 2 cut(s) 161, 176
CviAII CATG 2 cut(s) 262, 302
CviJI RGCY 7 cut(s) 17, 31, 96, 137, 163, 199, 212
CviKI_1 RGCY 7 cut(s) 17, 31, 96, 137, 163, 199, 212
DpnI GATC 2 cut(s) 146, 297
DpnII GATC 2 cut(s) 144, 295
Eco47I GGWCC 1 cut(s) 176
Eco91I GGTNACC 1 cut(s) 80
EcoO65I GGTNACC 1 cut(s) 80
FaeI CATG 2 cut(s) 265, 305
FaiI YATR 9 cut(s) 61, 263, 288, 303, 315, 320, 339, 438, 451
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 261, 301
Fnu4HI GCNGC 2 cut(s) 97, 110
Fsp4HI GCNGC 2 cut(s) 97, 110
FspBI CTAG 1 cut(s) 463
GluI GCNGC 2 cut(s) 97, 110
HaeIII GGCC 2 cut(s) 163, 212
Hin1II CATG 2 cut(s) 265, 305
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 267
HphI GGTGA 4 cut(s) 92, 175, 385, 404
Hpy166II GTNNAC 2 cut(s) 12, 376
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 3 cut(s) 271, 308, 413
Hpy8I GTNNAC 2 cut(s) 12, 376
HpyAV CCTTC 6 cut(s) 161, 197, 364, 383, 443, 451
HpyCH4III ACNGT 2 cut(s) 86, 398
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
Hsp92II CATG 2 cut(s) 265, 305
Kzo9I GATC 2 cut(s) 144, 295
LpnPI CCDG 4 cut(s) 38, 98, 420, 441
Lsp1109I GCAGC 2 cut(s) 83, 121
MaeI CTAG 1 cut(s) 463
MaeIII GTNAC 5 cut(s) 80, 86, 181, 392, 402
MalI GATC 2 cut(s) 146, 297
MboI GATC 2 cut(s) 144, 295
MboII GAAGA 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 346
MlyI GAGTC 1 cut(s) 276
MnlI CCTC 4 cut(s) 118, 223, 309, 379
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 2 cut(s) 144, 295
NlaIII CATG 2 cut(s) 265, 305
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 4 cut(s) 80, 86, 181, 392
PctI GAATGC 1 cut(s) 447
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 98, 111
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PspEI GGTNACC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 161, 176
PsyI GACNNNGTC 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 97, 110
Sau3AI GATC 2 cut(s) 144, 295
Sau96I GGNCC 2 cut(s) 161, 176
SchI GAGTC 1 cut(s) 276
SduI GDGCHC 1 cut(s) 346
SetI ASST 5 cut(s) 11, 98, 134, 375, 394
SfcI CTRYAG 1 cut(s) 91
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
SspMI CTAG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 86, 398
TaqI TCGA 1 cut(s) 412
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseFI GTSAC 4 cut(s) 80, 86, 181, 392
TseI GCWGC 2 cut(s) 96, 109
Tsp45I GTSAC 4 cut(s) 80, 86, 181, 392
TspDTI ATGAA 2 cut(s) 383, 425
Tth111I GACNNNGTC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 176
XspI CTAG 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.