Rh7BG452400

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000253
Physical Location & Seq
Reverse (-)
53150815 .. 53157560
6746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG452400.1

Sequence Viewer

Length: 3183 bp
ATGACCCCCCTGGTATGGTTGCAGGTCATGGATGCAAGTGGCCACATTTGTACTGAAAGAGCTCTTGACGCCCGCGGAAAAGTACTTGAACAAGGTCCGGAATATCACAGATCCTCATTCCTGAGCAGCATACCTATTCATCCACCTCCTAAAGACAGAGTCACTTGGGTGACTGAGGTACAAGTTCATTCAGGGTACCTTACTTTTGATCAGAGTTCCGAGGATCAAGTAATAAGAACCTGTCGAACTCATGGTGCATCATTTCAAGCTCGTACATTAGAAAAGGTCAACAATGATGAGGAAGGTGATTCTTTTACTCCTCAGGAAGATTTCTATCCTGTTCTCCATAAGATGCTGAGAGACAAACAAGACTGGAAACATACTCCTTATTTCCGAGGAGTAGCAACCTTCGAGCTTAGCACTATGGAGTGGACTGATTCTATAATGAGAAGATTTGGGGGTATTTTGAAGAATGCAGGAATACTTGGTGCTGTTGGAGTCTCTTGTTTTCCATACCACTATTCTACAAATACATGGAAAGCCTTTTGTGAATTATGGGGGCCACTAACCAACACACTGCACCATGGGAATGGAGAAATGGGCATTTCTTTATATGATATGAAAGTGATTGGAGGTTTACCAATTCTGGGGCATCCATATGAAGAATTTATCCCTGTCAACAGTGAGTTGCATTGCAGTGAGCGCTATCCATCTACAGTTGCTGAGCTCTTGCGCATTCACTCTCAGTTGTGTACTTTTCACAAAAGGGATTTCATTTATTGGGATGAGTGGGTTGATTATTTTTACCGCGGGAAGATATTGTACGCGGCTTATGGTGAGGTTGGGAATAGAAAGGCTTATCCACATCAAGGCAGATTCTCACGGCGGCAACCCGATTTAACTATTTCGAAGGAGGGGGCCCTGGCTGCATTTTTGGCATATTGGCTTAGCAGGTTTGTCTTACCCTCTAGTCATTCCAATCTCCGTCCCGACACATTTTATATGGCTTCTTTGATGGCACAAGGCATCAGGGTTTCTTTAGCACCTTCAGTACTGGGCTATATTTACCATGGTCTTGGCCTAGCTGCCACTGATCCAGAAGGGCCTGGAAATTCGAATGTTTGCTTTCCCATTCATTATGTTATTGGTTGGCTAGGAGAACACTTCCCCTGCTTATATAGAGCCCGAGCTGATAGTGACTTCCCAACTAACCATCCGTATTTGGCAAGATATGCCGGTATTGAGGCCGTTGATTTGGATATTTCATCGGCTAGACGTGTTTTCAGAACTGATATTTCTGTGATTTACCGTCCTAGTTCATTTATTGAACAAAGCGGTTGCTTTTTGACTGACGATAGTGGCCTGTCAAGTGATCAGTTCGAGTTTTTGGTTTGTATGCGCTCTTCATTGTTGCCGGTGAGAGTGGGACGTGATCTCTGCTTGGAACCATATTATCCGAACAGATTTGCTCGCCAATTTGGCTTTGATCAAGGGGTTCCCTCAAACAGACTCAGTTTTGGCCTTGCAAGAAGGCGACAGTGCTGCATTGAGGATTTAGCCAAGGCCCAGCAGGTACTCCTCCAAACAGATACCGGCGCTCGCTTTTACATTCCGCGTTCCACTTATAATGGGACATGTACCTGGACATATTGTAGGTGGTGGATGAGGGCTTGTGCACCATACCTAGGCAGGTCTGTGTCTAATGTTTACTTGACATTGACAAAACGTCGACTTGAGAAAAGAGATGATATATTTGTGATCAAATCCATCAGAGAGTTCTCTTCCAATTTGCGGAAAGAGGTCTTGTTTTCAGAAGAGGACATAAGTAGGTCAGCCGATTATGACAAGAATCCCCAACCTGCTAAAAGGACGAACAGGTCGGGTGAATATCGGAAAGCATCTTCGAGTAATTTTGAAGCTAGGCATTCAAAACGACAACGCAACGAGAAACATGGCATCAAAGAAACTACCAGAGCACCATTTCAAAATAGTGGGGCAGTAAAGACTCTCAAGTGTGCTCAATTTGAGAGATACACTGGTTATGAAGATGGCAGAATTGACGATATTACTTTTCCTCAGGATGGTTTTGTTCAGGACAGAGATGTTGCCTCCTATGATGGTAACAAAATCACTACTCCAAGGTTGAAATCAGTAATATCACGAGTTACAGAATCAAATGATTCAGAAGTCGAGACACAGCTACAGGACTTGGAACAAAAGTCAAGGAGACCACTTGAATTGGAGCCAGAAAATTTGGAACCAAAATCAATTTGCTCAACGTCTAAAGAATGTGATGTAGGGGAACTAGTAGAGACCCCAGCGCTGGAGACGAATAATTCTGAACCAAACCCGCATCAATCAGAGCCTAAGTTGAAAGATTCCAAAATCCTAGCTGAAGATGTCCATGACTCTGTTAGTGGAGCCACTGAACCTATCGATCCCAACGCCTCCGAGCATATTGATGAAGGTATTAACTCACTCACTGAGGCTACATCGACTCCGCATGAGATTTTTGGTGAAGGATTGAATAAACTCCGGATGGATTTTATTATCGCCGAGATACAACAGATCCTAGACAAATTGAACTCGTCTCAATCATTTGGGGCAATTCTTGATTGCCAGGACGAAGTTTCAAAAACACTTGATGTGTTGGAGTTGATGTTCAAAACCCTCGGCTCTGGTAAGGACAGATTTGAGTGGTTTACTGCAAAAGTTTATCTAACCTTTGACTTGGCAGCTCAGCTTTCTCAAGACATGAGCATTATTGAGAAAGATTATAGATTGGACATTGAGCGCATCAATGAGTTAATTCAAAACCACAAAAAGTGTCAAGCTGCCAAGAAAGTCCTTGATTCGGAATTATTGAGCCTTAACCTGGAACTTGCAAGTTTAAAGACCACCGAACGAGGTATTATTGAGGTAGAAGAGAAAGCTCAACGGCTGCGCAAGGATTATGAGACTGCAAAAAGTCACCTTGAAAAGAAAATAAGTTGGTCCGAGGCTTCTCTTGAGCGTCAAAACAAACTGGATGAAGAGCTTCGTCAGGCAAGGATTGAGGCTCGAGAGGATAAACTTGCAGAATTTAAGAATGTCGAGAGCTCATTTAAAGTCCGGCAAGAGGAGCTGGAGAAGCAAATAGACACTTTGAAGTCGTTTGGTCAACAGCTTAAGCAAAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1060

Amino Acids

121.21

Weight (kDa)

5.98

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 160 - 555 3.7e-38 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1626
AasI GACNNNNNNGTC 1 cut(s) 1876
Acc16I TGCGCA 2 cut(s) 734, 2945
Acc36I ACCTGC 5 cut(s) 13, 942, 1561, 1680, 1867
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 1729
AccII CGCG 4 cut(s) 75, 810, 827, 1615
AccIII TCCGGA 2 cut(s) 97, 2535
AclWI GGATC 5 cut(s) 105, 231, 1088, 2432, 2563
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 4 cut(s) 665, 1111, 2251, 3080
AcuI CTGAAG 2 cut(s) 1032, 2415
AcyI GRCGYC 1 cut(s) 69
AfeI AGCGCT 2 cut(s) 704, 2322
AflII CTTAAG 1 cut(s) 3167
AflIII ACRYGT 2 cut(s) 1276, 1634
AhdI GACNNNNNGTC 1 cut(s) 1725
AhlI ACTAGT 1 cut(s) 2305
AjiI CACGTC 2 cut(s) 1277, 1430
AjnI CCWGG 6 cut(s) 9, 921, 1105, 1640, 2619, 2874
AleI CACNNNNGTG 1 cut(s) 167
AloI GAACNNNNNNTCC 2 cut(s) 2645, 2677
Alw21I GWGCWC 6 cut(s) 64, 729, 1678, 1978, 2020, 3101
Alw26I GTCTC 8 cut(s) 354, 505, 2186, 2221, 2306, 2321, 2595, 2951
Alw44I GTGCAC 1 cut(s) 1674
AlwI GGATC 5 cut(s) 105, 231, 1088, 2432, 2563
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 2 cut(s) 1185, 3060
Aor13HI TCCGGA 2 cut(s) 97, 2535
Aor51HI AGCGCT 2 cut(s) 704, 2322
AoxI GGCC 9 cut(s) 40, 560, 918, 1078, 1103, 1245, 1360, 1519, 1563
ApaI GGGCCC 1 cut(s) 922
ApaLI GTGCAC 1 cut(s) 1674
ApeKI GCWGC 7 cut(s) 126, 926, 1085, 1542, 2735, 2834, 2941
ApoI RAATTY 4 cut(s) 665, 1111, 2251, 3080
Asp700I GAANNNNTTC 1 cut(s) 3036
Asp718I GGTACC 1 cut(s) 195
AspA2I CCTAGG 1 cut(s) 1684
AspLEI GCGC 7 cut(s) 705, 735, 1401, 1598, 2323, 2796, 2946
AspS9I GGNCC 7 cut(s) 95, 560, 918, 919, 1103, 1564, 2994
AsuHPI GGTGA 7 cut(s) 181, 317, 848, 1429, 1895, 2528, 2963
AsuII TTCGAA 2 cut(s) 908, 1115
AvaI CYCGRG 2 cut(s) 1185, 3060
AvaII GGWCC 2 cut(s) 95, 2994
AvrII CCTAGG 1 cut(s) 1684
AxyI CCTNAGG 2 cut(s) 321, 2076
BaeGI GKGCMC 2 cut(s) 922, 1678
BaeI ACNNNNGTAYC 2 cut(s) 2023, 2056
BalI TGGCCA 1 cut(s) 42
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 5 cut(s) 64, 729, 922, 1186, 3101
BarI GAAGNNNNNNTAC 4 cut(s) 806, 838, 1387, 1419
BauI CACGAG 1 cut(s) 2160
Bbv12I GWGCWC 6 cut(s) 64, 729, 1678, 1978, 2020, 3101
BbvI GCAGC 7 cut(s) 138, 913, 1072, 1529, 2747, 2821, 2928
BccI CCATC 8 cut(s) 718, 1009, 1221, 1775, 2042, 2075, 2111, 2533
BceAI ACGGC 3 cut(s) 899, 1232, 2954
BcgI CGANNNNNNTGC 2 cut(s) 1524, 1558
BciT130I CCWGG 6 cut(s) 11, 923, 1107, 1642, 2621, 2876
BclI TGATCA 4 cut(s) 208, 1372, 1486, 1758
BcoDI GTCTC 8 cut(s) 354, 505, 2186, 2221, 2306, 2321, 2595, 2951
BcuI ACTAGT 1 cut(s) 2305
BfmI CTRYAG 2 cut(s) 714, 2201
BfoI RGCGCY 3 cut(s) 706, 1599, 2324
BfrI CTTAAG 1 cut(s) 3167
BfuAI ACCTGC 5 cut(s) 13, 942, 1561, 1680, 1867
BglI GCCNNNNNGGC 1 cut(s) 1479
BisI GCNGC 9 cut(s) 127, 828, 887, 927, 1086, 1543, 2736, 2835, 2942
BlnI CCTAGG 1 cut(s) 1684
BlpI GCTNAGC 4 cut(s) 416, 723, 947, 2739
BlsI GCNGC 9 cut(s) 128, 829, 888, 928, 1087, 1544, 2737, 2836, 2943
BmcAI AGTACT 2 cut(s) 84, 1053
Bme1390I CCNGG 6 cut(s) 11, 923, 1107, 1642, 2621, 2876
Bme18I GGWCC 2 cut(s) 95, 2994
BmeRI GACNNNNNGTC 1 cut(s) 1725
BmeT110I CYCGRG 2 cut(s) 1185, 3060
BmgBI CACGTC 2 cut(s) 1277, 1430
BmgT120I GGNCC 7 cut(s) 95, 560, 918, 919, 1103, 1564, 2994
BmiI GGNNCC 9 cut(s) 197, 561, 919, 920, 1446, 1497, 2244, 2259, 2422
BmrFI CCNGG 6 cut(s) 11, 923, 1107, 1642, 2621, 2876
BmrI ACTGGG 1 cut(s) 1064
BmsI GCATC 9 cut(s) 22, 266, 342, 661, 1035, 1907, 1965, 2362, 2805
BmuI ACTGGG 1 cut(s) 1064
BpmI CTGGAG 2 cut(s) 2345, 3146
Bpu10I CCTNAGC 1 cut(s) 122
Bpu1102I GCTNAGC 4 cut(s) 416, 723, 947, 2739
Bpu14I TTCGAA 2 cut(s) 908, 1115
BpuEI CTTGAG 4 cut(s) 1754, 1994, 2733, 3029
Bsa29I ATCGAT 1 cut(s) 2436
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 2 cut(s) 2221, 2306
BsaWI WCCGGW 2 cut(s) 97, 2535
BsaXI ACNNNNNCTCC 4 cut(s) 2482, 2512, 2645, 2675
Bse118I RCCGGY 3 cut(s) 1235, 1414, 1592
Bse1I ACTGG 4 cut(s) 377, 1059, 2041, 3030
Bse21I CCTNAGG 2 cut(s) 321, 2076
Bse3DI GCAATG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 2 cut(s) 97, 2535
BseBI CCWGG 6 cut(s) 11, 923, 1107, 1642, 2621, 2876
BseCI ATCGAT 1 cut(s) 2436
BseGI GGATG 9 cut(s) 37, 139, 652, 790, 1213, 1668, 2086, 2544, 3034
BseJI GATNNNNATC 1 cut(s) 333
BseMI GCAATG 1 cut(s) 691
BseNI ACTGG 4 cut(s) 377, 1059, 2041, 3030
BseRI GAGGAG 4 cut(s) 309, 411, 1568, 3134
BseSI GKGCMC 2 cut(s) 922, 1678
BseXI GCAGC 7 cut(s) 138, 913, 1072, 1529, 2747, 2821, 2928
BseYI CCCAGC 2 cut(s) 1566, 2317
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 4 cut(s) 75, 810, 827, 1615
BshFI GGCC 9 cut(s) 42, 562, 920, 1080, 1105, 1247, 1362, 1521, 1565
BshNI GGYRCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 2436
BsiHKAI GWGCWC 6 cut(s) 64, 729, 1678, 1978, 2020, 3101
BsiHKCI CYCGRG 2 cut(s) 1185, 3060
BsiSI CCGG 6 cut(s) 98, 1236, 1415, 1593, 2536, 3112
BslFI GGGAC 3 cut(s) 972, 1440, 1645
BsmAI GTCTC 8 cut(s) 354, 505, 2186, 2221, 2306, 2321, 2595, 2951
BsmBI CGTCTC 2 cut(s) 2321, 2595
BsmFI GGGAC 3 cut(s) 972, 1440, 1645
BsmI GAATGC 3 cut(s) 478, 735, 1924
BsnI GGCC 9 cut(s) 42, 562, 920, 1080, 1105, 1247, 1362, 1521, 1565
Bso31I GGTCTC 2 cut(s) 2221, 2306
BsoBI CYCGRG 2 cut(s) 1185, 3060
Bsp119I TTCGAA 2 cut(s) 908, 1115
Bsp120I GGGCCC 1 cut(s) 918
Bsp1286I GDGCHC 8 cut(s) 64, 729, 922, 1186, 1678, 1978, 2020, 3101
Bsp13I TCCGGA 2 cut(s) 97, 2535
Bsp1720I GCTNAGC 4 cut(s) 416, 723, 947, 2739
Bsp19I CCATGG 2 cut(s) 583, 1069
BspANI GGCC 9 cut(s) 42, 562, 920, 1080, 1105, 1247, 1362, 1521, 1565
BspDI ATCGAT 1 cut(s) 2436
BspEI TCCGGA 2 cut(s) 97, 2535
BspFNI CGCG 4 cut(s) 75, 810, 827, 1615
BspLI GGNNCC 9 cut(s) 197, 561, 919, 920, 1446, 1497, 2244, 2259, 2422
BspMI ACCTGC 5 cut(s) 13, 942, 1561, 1680, 1867
BspPI GGATC 5 cut(s) 105, 231, 1088, 2432, 2563
BspQI GCTCTTC 2 cut(s) 1408, 3027
BspT104I TTCGAA 2 cut(s) 908, 1115
BspT107I GGYRCC 1 cut(s) 195
BspTI CTTAAG 1 cut(s) 3167
BspTNI GGTCTC 2 cut(s) 2221, 2306
BsrDI GCAATG 1 cut(s) 691
BsrFI RCCGGY 3 cut(s) 1235, 1414, 1592
BsrI ACTGG 4 cut(s) 377, 1059, 2041, 3030
BssAI RCCGGY 3 cut(s) 1235, 1414, 1592
BssNI GRCGYC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 2160
BssT1I CCWWGG 5 cut(s) 583, 1069, 1560, 1684, 2138
Bst2BI CACGAG 1 cut(s) 2160
Bst2UI CCWGG 6 cut(s) 11, 923, 1107, 1642, 2621, 2876
Bst4CI ACNGT 4 cut(s) 683, 718, 1310, 1539
Bst6I CTCTTC 5 cut(s) 1408, 1786, 1809, 2919, 3027
BstACI GRCGYC 1 cut(s) 69
BstAFI CTTAAG 1 cut(s) 3167
BstAPI GCANNNNNTGC 1 cut(s) 1232
BstBI TTCGAA 2 cut(s) 908, 1115
BstC8I GCNNGC 3 cut(s) 73, 1471, 1600
BstDSI CCRYGG 4 cut(s) 73, 583, 808, 1069
BstF5I GGATG 9 cut(s) 37, 139, 652, 790, 1213, 1668, 2086, 2544, 3034
BstFNI CGCG 4 cut(s) 75, 810, 827, 1615
BstH2I RGCGCY 3 cut(s) 706, 1599, 2324
BstHHI GCGC 7 cut(s) 705, 735, 1401, 1598, 2323, 2796, 2946
BstMAI GTCTC 8 cut(s) 354, 505, 2186, 2221, 2306, 2321, 2595, 2951
BstMWI GCNNNNNNNGC 8 cut(s) 68, 702, 926, 935, 1232, 1479, 3121, 3130
BstNI CCWGG 6 cut(s) 11, 923, 1107, 1642, 2621, 2876
BstNSI RCATGY 1 cut(s) 1638
BstSCI CCNGG 6 cut(s) 9, 921, 1105, 1640, 2619, 2874
BstSFI CTRYAG 2 cut(s) 714, 2201
BstSLI GKGCMC 2 cut(s) 922, 1678
BstUI CGCG 4 cut(s) 75, 810, 827, 1615
BstV1I GCAGC 7 cut(s) 138, 913, 1072, 1529, 2747, 2821, 2928
BstX2I RGATCY 2 cut(s) 110, 2568
BstXI CCANNNNNNTGG 2 cut(s) 590, 1076
BstYI RGATCY 2 cut(s) 110, 2568
Bsu15I ATCGAT 1 cut(s) 2436
Bsu36I CCTNAGG 2 cut(s) 321, 2076
BsuRI GGCC 9 cut(s) 42, 562, 920, 1080, 1105, 1247, 1362, 1521, 1565
BsuTUI ATCGAT 1 cut(s) 2436
BtgI CCRYGG 4 cut(s) 73, 583, 808, 1069
BtrI CACGTC 2 cut(s) 1277, 1430
BtsCI GGATG 9 cut(s) 37, 139, 652, 790, 1213, 1668, 2086, 2544, 3034
BtsI GCAGTG 2 cut(s) 575, 703
BtsIMutI CAGTG 8 cut(s) 575, 688, 703, 1089, 1544, 2034, 2424, 2481
BveI ACCTGC 5 cut(s) 13, 942, 1561, 1680, 1867
Cac8I GCNNGC 3 cut(s) 73, 1471, 1600
CaiI CAGNNNCTG 1 cut(s) 722
CfoI GCGC 7 cut(s) 705, 735, 1401, 1598, 2323, 2796, 2946
Cfr10I RCCGGY 3 cut(s) 1235, 1414, 1592
Cfr13I GGNCC 7 cut(s) 95, 560, 918, 919, 1103, 1564, 2994
Cfr42I CCGCGG 2 cut(s) 76, 811
ClaI ATCGAT 1 cut(s) 2436
CseI GACGC 2 cut(s) 77, 3002
CspCI CAANNNNNGTGG 2 cut(s) 2220, 2255
DraI TTTAAA 2 cut(s) 2892, 3106
DrdI GACNNNNNNGTC 1 cut(s) 1876
DriI GACNNNNNGTC 1 cut(s) 1725
DseDI GACNNNNNNGTC 1 cut(s) 1876
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 5 cut(s) 1408, 1786, 1809, 2919, 3027
Eam1105I GACNNNNNGTC 1 cut(s) 1725
EarI CTCTTC 5 cut(s) 1408, 1786, 1809, 2919, 3027
Ecl136II GAGCTC 3 cut(s) 62, 727, 3099
Eco130I CCWWGG 5 cut(s) 583, 1069, 1560, 1684, 2138
Eco24I GRGCYC 5 cut(s) 64, 729, 922, 1186, 3101
Eco31I GGTCTC 2 cut(s) 2221, 2306
Eco47I GGWCC 2 cut(s) 95, 2994
Eco47III AGCGCT 2 cut(s) 704, 2322
Eco53kI GAGCTC 3 cut(s) 62, 727, 3099
Eco57I CTGAAG 2 cut(s) 1032, 2415
Eco81I CCTNAGG 2 cut(s) 321, 2076
Eco88I CYCGRG 2 cut(s) 1185, 3060
EcoICRI GAGCTC 3 cut(s) 62, 727, 3099
EcoO109I RGGNCCY 3 cut(s) 918, 919, 1103
EcoRII CCWGG 6 cut(s) 9, 921, 1105, 1640, 2619, 2874
EcoT14I CCWWGG 5 cut(s) 583, 1069, 1560, 1684, 2138
EcoT38I GRGCYC 5 cut(s) 64, 729, 922, 1186, 3101
ErhI CCWWGG 5 cut(s) 583, 1069, 1560, 1684, 2138
Esp3I CGTCTC 2 cut(s) 2321, 2595
FaqI GGGAC 3 cut(s) 972, 1440, 1645
FauI CCCGC 3 cut(s) 80, 803, 2358
FauNDI CATATG 1 cut(s) 658
FbaI TGATCA 4 cut(s) 208, 1372, 1486, 1758
FblI GTMKAC 1 cut(s) 1729
Fnu4HI GCNGC 9 cut(s) 127, 828, 887, 927, 1086, 1543, 2736, 2835, 2942
FokI GGATG 9 cut(s) 44, 126, 639, 797, 1200, 1675, 2093, 2551, 3041
FriOI GRGCYC 5 cut(s) 64, 729, 922, 1186, 3101
Fsp4HI GCNGC 9 cut(s) 127, 828, 887, 927, 1086, 1543, 2736, 2835, 2942
FspI TGCGCA 2 cut(s) 734, 2945
GlaI GCGC 7 cut(s) 704, 734, 1400, 1597, 2322, 2795, 2945
GluI GCNGC 9 cut(s) 127, 828, 887, 927, 1086, 1543, 2736, 2835, 2942
GsaI CCCAGC 2 cut(s) 1570, 2321
GsuI CTGGAG 2 cut(s) 2345, 3146
HaeII RGCGCY 3 cut(s) 706, 1599, 2324
HaeIII GGCC 9 cut(s) 42, 562, 920, 1080, 1105, 1247, 1362, 1521, 1565
HapII CCGG 6 cut(s) 98, 1236, 1415, 1593, 2536, 3112
HgaI GACGC 2 cut(s) 77, 3002
HhaI GCGC 7 cut(s) 705, 735, 1401, 1598, 2323, 2796, 2946
Hin1I GRCGYC 1 cut(s) 69
Hin6I GCGC 7 cut(s) 703, 733, 1399, 1596, 2321, 2794, 2944
HinP1I GCGC 7 cut(s) 703, 733, 1399, 1596, 2321, 2794, 2944
HincII GTYRAC 4 cut(s) 289, 679, 1730, 3161
HindII GTYRAC 4 cut(s) 289, 679, 1730, 3161
HpaII CCGG 6 cut(s) 98, 1236, 1415, 1593, 2536, 3112
HphI GGTGA 7 cut(s) 181, 317, 848, 1429, 1895, 2528, 2963
Hpy99I CGWCG 1 cut(s) 1731
HpyAV CCTTC 8 cut(s) 296, 418, 904, 1056, 1094, 1524, 2459, 2513
HpyCH4III ACNGT 4 cut(s) 683, 718, 1310, 1539
HpyCH4IV ACGT 4 cut(s) 1276, 1429, 1726, 2279
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 702, 926, 935, 1232, 1479, 3121, 3130
HpySE526I ACGT 4 cut(s) 1276, 1429, 1726, 2279
Hsp92I GRCGYC 1 cut(s) 69
HspAI GCGC 7 cut(s) 703, 733, 1399, 1596, 2321, 2794, 2944
Kpn2I TCCGGA 2 cut(s) 97, 2535
KpnI GGTACC 1 cut(s) 199
Ksp22I TGATCA 4 cut(s) 208, 1372, 1486, 1758
KspI CCGCGG 2 cut(s) 76, 811
LguI GCTCTTC 2 cut(s) 1408, 3027
LmnI GCTCC 3 cut(s) 2242, 2420, 3121
Lsp1109I GCAGC 7 cut(s) 138, 913, 1072, 1529, 2747, 2821, 2928
LweI GCATC 9 cut(s) 22, 266, 342, 661, 1035, 1907, 1965, 2362, 2805
MaeII ACGT 4 cut(s) 1276, 1429, 1726, 2279
MaeIII GTNAC 6 cut(s) 160, 169, 1196, 2120, 2164, 2969
MflI RGATCY 2 cut(s) 110, 2568
MhlI GDGCHC 8 cut(s) 64, 729, 922, 1186, 1678, 1978, 2020, 3101
MlsI TGGCCA 1 cut(s) 42
MluNI TGGCCA 1 cut(s) 42
MlyI GAGTC 6 cut(s) 168, 507, 1503, 1999, 2402, 2491
MmeI TCCRAC 2 cut(s) 475, 2631
Mox20I TGGCCA 1 cut(s) 42
MroI TCCGGA 2 cut(s) 97, 2535
MroXI GAANNNNTTC 1 cut(s) 3036
MscI TGGCCA 1 cut(s) 42
MseI TTAA 8 cut(s) 899, 2472, 2807, 2871, 2891, 3084, 3105, 3168
MslI CAYNNNNRTG 5 cut(s) 167, 588, 657, 696, 2460
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 75, 810
MspCI CTTAAG 1 cut(s) 3167
MspI CCGG 6 cut(s) 98, 1236, 1415, 1593, 2536, 3112
MspR9I CCNGG 6 cut(s) 11, 923, 1107, 1642, 2621, 2876
Mva1269I GAATGC 3 cut(s) 478, 735, 1924
MvaI CCWGG 6 cut(s) 11, 923, 1107, 1642, 2621, 2876
MvnI CGCG 4 cut(s) 75, 810, 827, 1615
MwoI GCNNNNNNNGC 8 cut(s) 68, 702, 926, 935, 1232, 1479, 3121, 3130
NcoI CCATGG 2 cut(s) 583, 1069
NdeI CATATG 1 cut(s) 658
NlaIV GGNNCC 9 cut(s) 197, 561, 919, 920, 1446, 1497, 2244, 2259, 2422
NmeAIII GCCGAG 2 cut(s) 2581, 2652
NmuCI GTSAC 4 cut(s) 160, 169, 1196, 2969
NsbI TGCGCA 2 cut(s) 734, 2945
NspI RCATGY 1 cut(s) 1638
NspV TTCGAA 2 cut(s) 908, 1115
OliI CACNNNNGTG 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 3060
PciI ACATGT 1 cut(s) 1634
PciSI GCTCTTC 2 cut(s) 1408, 3027
PctI GAATGC 3 cut(s) 478, 735, 1924
PdmI GAANNNNTTC 1 cut(s) 3036
PfeI GAWTC 8 cut(s) 308, 437, 876, 1849, 2171, 2180, 2378, 2852
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 9 cut(s) 128, 829, 888, 928, 1087, 1544, 2737, 2836, 2943
PleI GAGTC 6 cut(s) 167, 506, 1503, 1999, 2402, 2491
PpsI GAGTC 6 cut(s) 167, 506, 1503, 1999, 2402, 2491
PscI ACATGT 1 cut(s) 1634
PsiI TTATAA 1 cut(s) 1626
Psp124BI GAGCTC 3 cut(s) 64, 729, 3101
Psp6I CCWGG 6 cut(s) 9, 921, 1105, 1640, 2619, 2874
PspFI CCCAGC 2 cut(s) 1566, 2317
PspGI CCWGG 6 cut(s) 9, 921, 1105, 1640, 2619, 2874
PspN4I GGNNCC 9 cut(s) 197, 561, 919, 920, 1446, 1497, 2244, 2259, 2422
PspOMI GGGCCC 1 cut(s) 918
PspPI GGNCC 7 cut(s) 95, 560, 918, 919, 1103, 1564, 2994
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 2 cut(s) 110, 2568
PsyI GACNNNGTC 1 cut(s) 158
RseI CAYNNNNRTG 5 cut(s) 167, 588, 657, 696, 2460
SacI GAGCTC 3 cut(s) 64, 729, 3101
SacII CCGCGG 2 cut(s) 76, 811
SalI GTCGAC 1 cut(s) 1728
SapI GCTCTTC 2 cut(s) 1408, 3027
SaqAI TTAA 8 cut(s) 899, 2472, 2807, 2871, 2891, 3084, 3105, 3168
SatI GCNGC 9 cut(s) 127, 828, 887, 927, 1086, 1543, 2736, 2835, 2942
Sau96I GGNCC 7 cut(s) 95, 560, 918, 919, 1103, 1564, 2994
ScaI AGTACT 2 cut(s) 84, 1053
SchI GAGTC 6 cut(s) 168, 507, 1503, 1999, 2402, 2491
ScrFI CCNGG 6 cut(s) 11, 923, 1107, 1642, 2621, 2876
SduI GDGCHC 8 cut(s) 64, 729, 922, 1186, 1678, 1978, 2020, 3101
SfaNI GCATC 9 cut(s) 22, 266, 342, 661, 1035, 1907, 1965, 2362, 2805
SfcI CTRYAG 2 cut(s) 714, 2201
Sfr274I CTCGAG 1 cut(s) 3060
Sfr303I CCGCGG 2 cut(s) 76, 811
SfuI TTCGAA 2 cut(s) 908, 1115
SgrBI CCGCGG 2 cut(s) 76, 811
SinI GGWCC 2 cut(s) 95, 2994
SlaI CTCGAG 1 cut(s) 3060
SmiMI CAYNNNNRTG 5 cut(s) 167, 588, 657, 696, 2460
SmlI CTYRAG 6 cut(s) 1733, 2009, 2748, 3008, 3060, 3167
SmoI CTYRAG 6 cut(s) 1733, 2009, 2748, 3008, 3060, 3167
SpeI ACTAGT 1 cut(s) 2305
SstI GAGCTC 3 cut(s) 64, 729, 3101
StyD4I CCNGG 6 cut(s) 9, 921, 1105, 1640, 2619, 2874
StyI CCWWGG 5 cut(s) 583, 1069, 1560, 1684, 2138
TaaI ACNGT 4 cut(s) 683, 718, 1310, 1539
TaiI ACGT 4 cut(s) 1279, 1432, 1729, 2282
TatI WGTACW 4 cut(s) 50, 82, 752, 1051
TauI GCSGC 2 cut(s) 830, 889
TfiI GAWTC 8 cut(s) 308, 437, 876, 1849, 2171, 2180, 2378, 2852
Tru1I TTAA 8 cut(s) 899, 2472, 2807, 2871, 2891, 3084, 3105, 3168
Tru9I TTAA 8 cut(s) 899, 2472, 2807, 2871, 2891, 3084, 3105, 3168
TscAI CASTG 8 cut(s) 582, 688, 703, 1096, 1544, 2041, 2431, 2488
TseFI GTSAC 4 cut(s) 160, 169, 1196, 2969
TseI GCWGC 7 cut(s) 126, 926, 1085, 1542, 2735, 2834, 2941
Tsp45I GTSAC 4 cut(s) 160, 169, 1196, 2969
TspGWI ACGGA 2 cut(s) 974, 1206
TspRI CASTG 8 cut(s) 582, 688, 703, 1096, 1544, 2041, 2431, 2488
Tth111I GACNNNGTC 1 cut(s) 158
Vha464I CTTAAG 1 cut(s) 3167
VneI GTGCAC 1 cut(s) 1674
VpaK11BI GGWCC 2 cut(s) 95, 2994
XapI RAATTY 4 cut(s) 665, 1111, 2251, 3080
XceI RCATGY 1 cut(s) 1638
XhoI CTCGAG 1 cut(s) 3060
XmaJI CCTAGG 1 cut(s) 1684
XmiI GTMKAC 1 cut(s) 1729
XmnI GAANNNNTTC 1 cut(s) 3036
ZrmI AGTACT 2 cut(s) 84, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.