Rh6AG117500

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000253
Physical Location & Seq
Forward (+)
17718706 .. 17719182
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG117500.1

Sequence Viewer

Length: 477 bp
ATGTTGAAGTGTAAGAAGGACTGGGGTGAAGACTTCTGCTTTCGAGGTGGGGCCGTATTTGAGCATGGCATTCTAGAATGGATGGAAACCACCCTAACTGACTTTGAAGAGACATTAGACAAAGCCAGTATCTTTGGTGCAGTTGTTGTTTCCCGTTATCCGTATGAGTATTGCAGTAATGTGTGGAGGGCATTCTGTGAGCTGTGGGGGCCTTTAACAAACACTTTTCACCATGCAGATGGGGAAATGAGCATCTCTTTGGATGATTTAAATGTTATTGGAGGATTGCCGGTTTCAGGAGAACCATACGAAGAATTCGTTCCTCCAAACAAAGATTTGGTGAAGGTTGAATTATATCCTCCTATCGTTGCAGAGCTCTTGAGGATTTACACCACCACACCACTGCACCTCCGTCATCCTCAACCCTCCACCATCTTCAGTTATCCTCAGTGGCACCGCAATCGCAGCACCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

158

Amino Acids

18.19

Weight (kDa)

5.04

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 44 - 102 5.3e-10 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 453
AciI CCGC 1 cut(s) 457
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 1 cut(s) 421
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 3 cut(s) 7, 107, 350
AluBI AGCT 2 cut(s) 202, 376
AluI AGCT 2 cut(s) 202, 376
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 2 cut(s) 51, 209
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 51, 209
AsuHPI GGTGA 3 cut(s) 38, 221, 352
BanI GGYRCC 1 cut(s) 453
BanII GRGCYC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 378
BccI CCATC 3 cut(s) 76, 233, 440
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 2 cut(s) 74, 475
BisI GCNGC 1 cut(s) 466
BlsI GCNGC 1 cut(s) 467
BmgT120I GGNCC 2 cut(s) 51, 209
BmiI GGNNCC 3 cut(s) 52, 210, 455
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 261
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 400
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 2 cut(s) 26, 126
BseGI GGATG 3 cut(s) 87, 268, 415
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 2 cut(s) 26, 126
BsgI GTGCAG 2 cut(s) 159, 389
BshFI GGCC 2 cut(s) 53, 211
BshNI GGYRCC 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 104
BsmI GAATGC 2 cut(s) 69, 191
BsnI GGCC 2 cut(s) 53, 211
Bsp1286I GDGCHC 1 cut(s) 378
BspACI CCGC 1 cut(s) 457
BspANI GGCC 2 cut(s) 53, 211
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 52, 210, 455
BspT107I GGYRCC 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 2 cut(s) 26, 126
BssAI RCCGGY 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 447
BstF5I GGATG 3 cut(s) 87, 268, 415
BstMAI GTCTC 1 cut(s) 104
BstMWI GCNNNNNNNGC 2 cut(s) 208, 465
BstV2I GAAGAC 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 239
BsuRI GGCC 2 cut(s) 53, 211
BtsCI GGATG 3 cut(s) 87, 268, 415
BtsI GCAGTG 1 cut(s) 401
BtsIMutI CAGTG 2 cut(s) 401, 455
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 51, 209
CviAII CATG 2 cut(s) 65, 233
CviJI RGCY 5 cut(s) 53, 125, 202, 211, 376
CviKI_1 RGCY 5 cut(s) 53, 125, 202, 211, 376
DdeI CTNAG 1 cut(s) 447
DraI TTTAAA 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 378
FaeI CATG 2 cut(s) 68, 236
FaiI YATR 5 cut(s) 66, 165, 234, 307, 355
FatI CATG 2 cut(s) 64, 232
Fnu4HI GCNGC 1 cut(s) 466
FokI GGATG 3 cut(s) 94, 275, 402
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 466
FspBI CTAG 2 cut(s) 74, 475
GluI GCNGC 1 cut(s) 466
HaeIII GGCC 2 cut(s) 53, 211
HapII CCGG 1 cut(s) 290
Hin1II CATG 2 cut(s) 68, 236
HpaII CCGG 1 cut(s) 290
HphI GGTGA 3 cut(s) 38, 221, 352
Hpy188III TCNNGA 3 cut(s) 74, 297, 379
HpyAV CCTTC 2 cut(s) 10, 337
HpyCH4V TGCA 5 cut(s) 140, 174, 236, 371, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 465
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 2 cut(s) 68, 236
LpnPI CCDG 4 cut(s) 7, 139, 282, 303
LweI GCATC 1 cut(s) 261
MaeI CTAG 2 cut(s) 74, 475
MboII GAAGA 4 cut(s) 41, 119, 323, 427
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 2 cut(s) 314, 350
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 2 cut(s) 215, 269
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 290
Mva1269I GAATGC 2 cut(s) 69, 191
MwoI GCNNNNNNNGC 2 cut(s) 208, 465
NlaIII CATG 2 cut(s) 68, 236
NlaIV GGNNCC 3 cut(s) 52, 210, 455
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 2 cut(s) 69, 191
PdmI GAANNNNTTC 1 cut(s) 318
PkrI GCNGC 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 378
PspN4I GGNNCC 3 cut(s) 52, 210, 455
PspPI GGNCC 2 cut(s) 51, 209
RseI CAYNNNNRTG 1 cut(s) 237
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 2 cut(s) 215, 269
SatI GCNGC 1 cut(s) 466
Sau96I GGNCC 2 cut(s) 51, 209
SduI GDGCHC 1 cut(s) 378
SetI ASST 6 cut(s) 49, 204, 348, 378, 411, 473
SfaNI GCATC 1 cut(s) 261
SmiI ATTTAAAT 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 2 cut(s) 314, 350
SsiI CCGC 1 cut(s) 457
SspMI CTAG 2 cut(s) 74, 475
SstI GAGCTC 1 cut(s) 378
SwaI ATTTAAAT 1 cut(s) 270
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 314, 350
Tru1I TTAA 2 cut(s) 215, 269
Tru9I TTAA 2 cut(s) 215, 269
TscAI CASTG 2 cut(s) 408, 455
TseI GCWGC 1 cut(s) 465
TspGWI ACGGA 2 cut(s) 150, 401
TspRI CASTG 2 cut(s) 408, 455
XapI RAATTY 1 cut(s) 314
XbaI TCTAGA 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 2 cut(s) 74, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.