Rh2DG529500

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000253
Physical Location & Seq
Reverse (-)
75532175 .. 75534550
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG529500.1

Sequence Viewer

Length: 2376 bp
ATGGATGCTCAAGGATTTCTTTGCTCCGAGAGAGCCCCAAAGAAGCAAGGGAAAGATCTTGGCTACGGTCCTGAATACCGAAGATCGTTACCTTTGAACTCGATCAGTCTGACGGTGTCCCTTGAGAGTAGGCCTACCTGGGTTACCACTGCCAACTTGAATTCTGGTCACCTTAGATTCGATCCTCATGCCGAAGACGGTGTTATAAAGAATGTTCGCTATTTCGGTGCTCATTTTGATACTCACACGTTGATGAAGGCAAACAATGAAGAGGACGGTGACAACAAGTTCCCAGTTGGAGAAGATTTTTACCCAGCCCTTCATAGAATGCTGAAGTGTAAGAAAGACTGGGGTGAAGACTTATGTTTTCGTGGTCGGGCCGTATTTGAGCATGGCATTCTAGAATGGACGGAAACCACCCTAACTGAATTTGAAGAGTCATTAGACAAAGCTGGTATCTTCGGTGCAGTTGCTGTTTCCCGTTATCCGTATGAGTATTGCAGTAATGTGTGGAGGGCATTCTGTGAGCTGTGGGGGCCTTTAACAAACACTTTTCACCATGCAGATGGGGAAATGCGCATCTCTTTGCATGATTTGAATGTTATTAGAGGATTGCCGGTTTCAGGAGAACCATACGAAGAATTCATTCCTCCAAACAAAAATCTGGTGAAGGTTGAATTATACCATTCTACAGTTGCAAAGCTCTTGAGGATTTATACCTATCTGTGTGCTGCTTATAAGAGCAGATATGTCTACTGGCCATGGTGGATCAAACATTTTTATCGTGGGGAGATAATTTACGGAGCCTATGGTGAATGTAAGAATTCTGGGGTTCCGAAACTGAGAGAACCAAAGCTTGAGTTGAAGATTTCAAAGCAAGGAAGACTGGCTGCATTCCTCGCTTTCTGGCTTAGCAGGTTCATTCTCCCTTCCAACAGTAAGAAGATAAGGCCTGAGACTTTCTATATGGCCTCTTTGATGGCACAGGGCATCAGAGTATCTCTTGCGCCCGCAGTACTGGGTTATGTGTACCATGGTCTTGGTGAGATGGCTACTCACTCTGCTGGTCCTGGCTCTTCTAACTCTTGTTTGCCTATCCACTACGTCATTGGCTGGCTTGGAGAATATTTTCCTTATCTGTACTCATCACGCTCTGATAAAGAATTCCCCGTAGGGTATCCCCTTTTGGCCAGGTATGCAGGTGTTCAAGGCAAGAGTCTAAGCATTATAGAGGCTCGTATGGTTTTCAGGACCAATAAATATGTCGTGCATCGCCCCATCTATGTAGCCTATGAAAAAGACCGTTTTTTGCTTGATGATGACAAATTGCCTGATGTATTATTTGAGGTCCTCATCTGTATGCGTTCTGCAATGCTCCCTGTGCGAGTTGGCGAGAGTCTTTTCCTTGAGCCCTATTATCCAAACAGGTTTGCTGGTCAGTTTGGTCTTGATCAGAGTGTTCCCTCTAACAAACTATCCTTTAGTGTTTCTAAAAGGCAGCAATGTGGTGTTGAGGATCTGCTGAGGGCACAGACTATCCTGTATAGGAAGAACACTACCTCTCGTTTCTTTGTCCCACGTTCTTCTCGTTCTGGACAGTGTACGTGGTGGTACTGCAGGTGGTGGTCAAGAGCTTGTACTCCTTACTTGGGACTATCGGTGTCCAAAACCTTCATGACTTTGAATAAGCGCCCTCCTGAAAAGCCACAACATGTTTTCGTCGTGCAGAACTTGAGAGAAATTTCTACTGGTTTGAAACAAGAGGTTAAAATATCAGAGGTGGAAAAGTCTCTTGGGAAATCTTCTAGAAAGGCTCCTCGAAAATCTCGTGATGGAGCTTCTTGTTCTAAGGCCAGCAGGGCTCGTCCCACAGATGAACGTGGTGGGCACAAAAGAGTTAGGCTTGAAAAGGTAGTTGAAGAGATTGTCGTTATCCCAGTGAAGTCTTCTTCAAATGGTGAGCGTGAGTTGGATGTTCACAGTCCTTTGAGAGCAGAAGCTCCAAATCAAGTCATTGAGAATGAAGCGGTTATGCCAACCATCTGTTTGAGTGAAGCTTCTTCAAACCAGGCTCTGTCACCATTTTCAAATCTGGAGAACTCCATATCTAATTTGCTTGGTTCAGAACTGCCGTTCTTCAAGAAGAATTACCTCATTGCTCAGGTTGTAGACATTTACGCTAAAGTTTCTTCATCTTCGATGCCAAAGGAGCTGTTAGTCCATGTTTTGGACATCAGATCAAGTCTTGACATGCTTCACCCTGCAATTAAGCCTCTAAAAGCTGGAAAGCCGCAACTTGAAGCGTTCATAATTGCTATTGAGAAGATGCTAGAAGTGGCAGACCAGTCATTAGCTACTACTGAGGTCCTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

791

Amino Acids

89.78

Weight (kDa)

9.06

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 152 - 543 6.9e-40 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 206, 738
AarI CACCTGC 2 cut(s) 1190, 1608
Acc16I TGCGCA 1 cut(s) 578
Acc36I ACCTGC 3 cut(s) 906, 1190, 1608
AccB7I CCANNNNNTGG 1 cut(s) 2227
AccI GTMKAC 2 cut(s) 753, 2169
AciI CCGC 3 cut(s) 1011, 2027, 2291
AclWI GGATC 3 cut(s) 176, 776, 1524
AcoI YGGCCR 2 cut(s) 758, 1188
AcsI RAATTY 6 cut(s) 160, 428, 641, 823, 1163, 1740
AcuI CTGAAG 1 cut(s) 353
AfaI GTAC 6 cut(s) 1017, 1031, 1142, 1603, 1613, 1639
AfiI CCNNNNNNNGG 3 cut(s) 623, 1649, 2227
AflII CTTAAG 1 cut(s) 2369
AflIII ACRYGT 2 cut(s) 246, 1711
AjnI CCWGG 4 cut(s) 137, 1069, 1190, 2067
AjuI GAANNNNNNNTTGG 2 cut(s) 1776, 1808
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 950, 1794
AlwI GGATC 3 cut(s) 176, 776, 1524
AlwNI CAGNNNCTG 2 cut(s) 473, 2074
AoxI GGCC 8 cut(s) 131, 378, 536, 758, 950, 969, 1188, 1851
ApeKI GCWGC 3 cut(s) 731, 890, 1498
ApoI RAATTY 6 cut(s) 160, 428, 641, 823, 1163, 1740
Asp700I GAANNNNTTC 2 cut(s) 645, 1128
AspLEI GCGC 3 cut(s) 579, 1009, 1692
AspS9I GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
AvaII GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
BaeGI GKGCMC 2 cut(s) 1531, 1890
BalI TGGCCA 2 cut(s) 760, 1190
BanII GRGCYC 3 cut(s) 37, 1413, 1864
BauI CACGAG 1 cut(s) 1827
BbsI GAAGAC 4 cut(s) 201, 363, 889, 1938
Bbv12I GWGCWC 1 cut(s) 232
BbvCI CCTCAGC 1 cut(s) 1523
BbvI GCAGC 3 cut(s) 718, 877, 1510
BccI CCATC 6 cut(s) 560, 973, 1042, 1286, 1826, 2048
BceAI ACGGC 2 cut(s) 365, 2116
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 4 cut(s) 139, 1071, 1192, 2069
BciVI GTATCC 1 cut(s) 1188
BclI TGATCA 1 cut(s) 1450
BcoDI GTCTC 2 cut(s) 950, 1794
BfaI CTAG 3 cut(s) 401, 1806, 2330
BfmI CTRYAG 2 cut(s) 690, 1615
BfoI RGCGCY 1 cut(s) 1693
BfrI CTTAAG 1 cut(s) 2369
BfuAI ACCTGC 3 cut(s) 906, 1190, 1608
BfuI GTATCC 1 cut(s) 1188
BglI GCCNNNNNGGC 1 cut(s) 1859
BglII AGATCT 1 cut(s) 55
BisI GCNGC 4 cut(s) 732, 891, 1499, 2291
BlpI GCTNAGC 1 cut(s) 911
BlsI GCNGC 4 cut(s) 733, 892, 1500, 2292
BmcAI AGTACT 1 cut(s) 1017
Bme1390I CCNGG 4 cut(s) 139, 1071, 1192, 2069
Bme18I GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
BmgT120I GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
BmiI GGNNCC 4 cut(s) 537, 805, 834, 1815
BmrFI CCNGG 4 cut(s) 139, 1071, 1192, 2069
BmrI ACTGGG 4 cut(s) 287, 358, 1028, 1931
BmsI GCATC 5 cut(s) 588, 999, 1279, 2190, 2316
BmuI ACTGGG 4 cut(s) 287, 358, 1028, 1931
BpiI GAAGAC 4 cut(s) 201, 363, 889, 1938
BpmI CTGGAG 1 cut(s) 2114
Bpu10I CCTNAGC 2 cut(s) 1523, 2160
Bpu1102I GCTNAGC 1 cut(s) 911
BpuEI CTTGAG 5 cut(s) 143, 727, 878, 1427, 1753
BsaAI YACGTR 1 cut(s) 1605
BsaJI CCNNGG 3 cut(s) 138, 761, 1033
Bsc4I CCNNNNNNNGG 3 cut(s) 623, 1649, 2227
Bse118I RCCGGY 1 cut(s) 616
Bse1I ACTGG 8 cut(s) 293, 353, 761, 891, 1023, 1753, 1937, 2344
Bse3DI GCAATG 3 cut(s) 1377, 1508, 2154
BseBI CCWGG 4 cut(s) 139, 1071, 1192, 2069
BseDI CCNNGG 3 cut(s) 138, 761, 1033
BseGI GGATG 2 cut(s) 10, 1978
BseLI CCNNNNNNNGG 3 cut(s) 623, 1649, 2227
BseMI GCAATG 3 cut(s) 1377, 1508, 2154
BseMII CTCAG 5 cut(s) 833, 945, 1514, 2174, 2352
BseNI ACTGG 8 cut(s) 293, 353, 761, 891, 1023, 1753, 1937, 2344
BseRI GAGGAG 1 cut(s) 1806
BseSI GKGCMC 2 cut(s) 1531, 1890
BseXI GCAGC 3 cut(s) 718, 877, 1510
BseYI CCCAGC 1 cut(s) 313
BsgI GTGCAG 2 cut(s) 486, 1745
BshFI GGCC 8 cut(s) 133, 380, 538, 760, 952, 971, 1190, 1853
BsiHKAI GWGCWC 1 cut(s) 232
BsiSI CCGG 1 cut(s) 617
BslFI GGGAC 4 cut(s) 103, 1559, 1665, 1851
BslI CCNNNNNNNGG 3 cut(s) 623, 1649, 2227
BsmAI GTCTC 2 cut(s) 950, 1794
BsmFI GGGAC 4 cut(s) 103, 1559, 1665, 1851
BsmI GAATGC 4 cut(s) 333, 396, 518, 893
BsnI GGCC 8 cut(s) 133, 380, 538, 760, 952, 971, 1190, 1853
Bsp1286I GDGCHC 6 cut(s) 37, 232, 1413, 1531, 1864, 1890
Bsp143I GATC 8 cut(s) 55, 83, 102, 181, 768, 1450, 1516, 2237
Bsp1720I GCTNAGC 1 cut(s) 911
Bsp19I CCATGG 2 cut(s) 761, 1033
BspACI CCGC 3 cut(s) 1011, 2027, 2291
BspANI GGCC 8 cut(s) 133, 380, 538, 760, 952, 971, 1190, 1853
BspCNI CTCAG 5 cut(s) 834, 946, 1515, 2173, 2353
BspHI TCATGA 1 cut(s) 1674
BspLI GGNNCC 4 cut(s) 537, 805, 834, 1815
BspMAI CTGCAG 1 cut(s) 1619
BspMI ACCTGC 3 cut(s) 906, 1190, 1608
BspPI GGATC 3 cut(s) 176, 776, 1524
BspQI GCTCTTC 1 cut(s) 1081
BspTI CTTAAG 1 cut(s) 2369
BsrDI GCAATG 3 cut(s) 1377, 1508, 2154
BsrFI RCCGGY 1 cut(s) 616
BsrI ACTGG 8 cut(s) 293, 353, 761, 891, 1023, 1753, 1937, 2344
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 3 cut(s) 138, 761, 1033
BssMI GATC 8 cut(s) 55, 83, 102, 181, 768, 1450, 1516, 2237
BssSI CACGAG 1 cut(s) 1827
BssT1I CCWWGG 2 cut(s) 761, 1033
Bst2BI CACGAG 1 cut(s) 1827
Bst2UI CCWGG 4 cut(s) 139, 1071, 1192, 2069
Bst4CI ACNGT 9 cut(s) 68, 115, 200, 278, 694, 938, 1304, 1599, 1982
Bst6I CTCTTC 4 cut(s) 264, 429, 1081, 1914
BstAFI CTTAAG 1 cut(s) 2369
BstBAI YACGTR 1 cut(s) 1605
BstC8I GCNNGC 3 cut(s) 1011, 1115, 1855
BstDEI CTNAG 9 cut(s) 173, 842, 911, 954, 1220, 1523, 1848, 2160, 2361
BstDSI CCRYGG 2 cut(s) 761, 1033
BstEII GGTNACC 2 cut(s) 142, 167
BstF5I GGATG 2 cut(s) 10, 1978
BstH2I RGCGCY 1 cut(s) 1693
BstHHI GCGC 3 cut(s) 579, 1009, 1692
BstKTI GATC 8 cut(s) 58, 86, 105, 184, 771, 1453, 1519, 2240
BstMAI GTCTC 2 cut(s) 950, 1794
BstMBI GATC 8 cut(s) 55, 83, 102, 181, 768, 1450, 1516, 2237
BstMWI GCNNNNNNNGC 6 cut(s) 535, 899, 1196, 1381, 1859, 2209
BstNI CCWGG 4 cut(s) 139, 1071, 1192, 2069
BstNSI RCATGY 2 cut(s) 1715, 2254
BstPI GGTNACC 2 cut(s) 142, 167
BstSCI CCNGG 4 cut(s) 137, 1069, 1190, 2067
BstSFI CTRYAG 2 cut(s) 690, 1615
BstSLI GKGCMC 2 cut(s) 1531, 1890
BstV1I GCAGC 3 cut(s) 718, 877, 1510
BstV2I GAAGAC 4 cut(s) 201, 363, 889, 1938
BstX2I RGATCY 2 cut(s) 55, 1516
BstXI CCANNNNNNTGG 2 cut(s) 566, 1040
BstYI RGATCY 2 cut(s) 55, 1516
BsuI GTATCC 1 cut(s) 1188
BsuRI GGCC 8 cut(s) 133, 380, 538, 760, 952, 971, 1190, 1853
BtgI CCRYGG 2 cut(s) 761, 1033
BtgZI GCGATG 1 cut(s) 1256
BtsCI GGATG 2 cut(s) 10, 1978
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 3 cut(s) 147, 1604, 1944
BveI ACCTGC 3 cut(s) 906, 1190, 1608
Cac8I GCNNGC 3 cut(s) 1011, 1115, 1855
CaiI CAGNNNCTG 2 cut(s) 473, 2074
CciI TCATGA 1 cut(s) 1674
CfoI GCGC 3 cut(s) 579, 1009, 1692
Cfr10I RCCGGY 1 cut(s) 616
Cfr13I GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
Csp6I GTAC 6 cut(s) 1016, 1030, 1141, 1602, 1612, 1638
CviQI GTAC 6 cut(s) 1016, 1030, 1141, 1602, 1612, 1638
DdeI CTNAG 9 cut(s) 173, 842, 911, 954, 1220, 1523, 1848, 2160, 2361
DpnI GATC 8 cut(s) 57, 85, 104, 183, 770, 1452, 1518, 2239
DpnII GATC 8 cut(s) 55, 83, 102, 181, 768, 1450, 1516, 2237
EaeI YGGCCR 2 cut(s) 758, 1188
Eam1104I CTCTTC 4 cut(s) 264, 429, 1081, 1914
EarI CTCTTC 4 cut(s) 264, 429, 1081, 1914
Eco130I CCWWGG 2 cut(s) 761, 1033
Eco147I AGGCCT 2 cut(s) 133, 952
Eco24I GRGCYC 3 cut(s) 37, 1413, 1864
Eco47I GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
Eco57I CTGAAG 1 cut(s) 353
Eco91I GGTNACC 2 cut(s) 142, 167
EcoO109I RGGNCCY 3 cut(s) 536, 1348, 2365
EcoO65I GGTNACC 2 cut(s) 142, 167
EcoRI GAATTC 4 cut(s) 160, 641, 823, 1163
EcoRII CCWGG 4 cut(s) 137, 1069, 1190, 2067
EcoT14I CCWWGG 2 cut(s) 761, 1033
EcoT38I GRGCYC 3 cut(s) 37, 1413, 1864
ErhI CCWWGG 2 cut(s) 761, 1033
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 4 cut(s) 103, 1559, 1665, 1851
FauI CCCGC 1 cut(s) 1018
FbaI TGATCA 1 cut(s) 1450
FblI GTMKAC 2 cut(s) 753, 2169
Fnu4HI GCNGC 4 cut(s) 732, 891, 1499, 2291
FokI GGATG 2 cut(s) 17, 1985
FriOI GRGCYC 3 cut(s) 37, 1413, 1864
Fsp4HI GCNGC 4 cut(s) 732, 891, 1499, 2291
FspAI RTGCGCAY 1 cut(s) 578
FspBI CTAG 3 cut(s) 401, 1806, 2330
FspI TGCGCA 1 cut(s) 578
GlaI GCGC 3 cut(s) 578, 1008, 1691
GluI GCNGC 4 cut(s) 732, 891, 1499, 2291
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 2114
HaeII RGCGCY 1 cut(s) 1693
HaeIII GGCC 8 cut(s) 133, 380, 538, 760, 952, 971, 1190, 1853
HapII CCGG 1 cut(s) 617
HhaI GCGC 3 cut(s) 579, 1009, 1692
Hin6I GCGC 3 cut(s) 577, 1007, 1690
HinP1I GCGC 3 cut(s) 577, 1007, 1690
HindIII AAGCTT 2 cut(s) 854, 2055
HinfI GANTC 4 cut(s) 177, 437, 1216, 1396
HpaII CCGG 1 cut(s) 617
Hpy166II GTNNAC 5 cut(s) 754, 1030, 1602, 1978, 2170
Hpy188I TCNGA 9 cut(s) 28, 111, 837, 995, 1156, 1455, 1777, 2125, 2237
Hpy8I GTNNAC 5 cut(s) 754, 1030, 1602, 1978, 2170
Hpy99I CGWCG 1 cut(s) 1724
HpyAV CCTTC 5 cut(s) 250, 329, 664, 939, 1681
HpyCH4III ACNGT 9 cut(s) 68, 115, 200, 278, 694, 938, 1304, 1599, 1982
HpyCH4IV ACGT 5 cut(s) 248, 1104, 1579, 1604, 1879
HpyF10VI GCNNNNNNNGC 6 cut(s) 535, 899, 1196, 1381, 1859, 2209
HpyF3I CTNAG 9 cut(s) 173, 842, 911, 954, 1220, 1523, 1848, 2160, 2361
HpySE526I ACGT 5 cut(s) 248, 1104, 1579, 1604, 1879
HspAI GCGC 3 cut(s) 577, 1007, 1690
Ksp22I TGATCA 1 cut(s) 1450
Kzo9I GATC 8 cut(s) 55, 83, 102, 181, 768, 1450, 1516, 2237
LguI GCTCTTC 1 cut(s) 1081
LmnI GCTCC 7 cut(s) 29, 803, 1380, 1819, 1835, 2005, 2209
Lsp1109I GCAGC 3 cut(s) 718, 877, 1510
LweI GCATC 5 cut(s) 588, 999, 1279, 2190, 2316
MaeI CTAG 3 cut(s) 401, 1806, 2330
MaeII ACGT 5 cut(s) 248, 1104, 1579, 1604, 1879
MaeIII GTNAC 5 cut(s) 87, 142, 167, 278, 2076
MalI GATC 8 cut(s) 57, 85, 104, 183, 770, 1452, 1518, 2239
MboI GATC 8 cut(s) 55, 83, 102, 181, 768, 1450, 1516, 2237
MflI RGATCY 2 cut(s) 55, 1516
MhlI GDGCHC 6 cut(s) 37, 232, 1413, 1531, 1864, 1890
MlsI TGGCCA 2 cut(s) 760, 1190
MluNI TGGCCA 2 cut(s) 760, 1190
MlyI GAGTC 3 cut(s) 446, 1225, 1405
MmeI TCCRAC 3 cut(s) 277, 957, 1950
Mox20I TGGCCA 2 cut(s) 760, 1190
MroXI GAANNNNTTC 2 cut(s) 645, 1128
MscI TGGCCA 2 cut(s) 760, 1190
MseI TTAA 4 cut(s) 542, 1767, 2268, 2370
MslI CAYNNNNRTG 3 cut(s) 251, 564, 1358
Msp20I TGGCCA 2 cut(s) 760, 1190
MspCI CTTAAG 1 cut(s) 2369
MspI CCGG 1 cut(s) 617
MspR9I CCNGG 4 cut(s) 139, 1071, 1192, 2069
Mva1269I GAATGC 4 cut(s) 333, 396, 518, 893
MvaI CCWGG 4 cut(s) 139, 1071, 1192, 2069
MwoI GCNNNNNNNGC 6 cut(s) 535, 899, 1196, 1381, 1859, 2209
NcoI CCATGG 2 cut(s) 761, 1033
NdeII GATC 8 cut(s) 55, 83, 102, 181, 768, 1450, 1516, 2237
NlaIV GGNNCC 4 cut(s) 537, 805, 834, 1815
NmuCI GTSAC 3 cut(s) 167, 278, 2076
NsbI TGCGCA 1 cut(s) 578
NspI RCATGY 2 cut(s) 1715, 2254
PagI TCATGA 1 cut(s) 1674
PaqCI CACCTGC 2 cut(s) 1190, 1608
PceI AGGCCT 2 cut(s) 133, 952
PciI ACATGT 1 cut(s) 1711
PciSI GCTCTTC 1 cut(s) 1081
PcsI WCGNNNNNNNCGW 2 cut(s) 1585, 1825
PctI GAATGC 4 cut(s) 333, 396, 518, 893
PdmI GAANNNNTTC 2 cut(s) 645, 1128
PfeI GAWTC 1 cut(s) 177
PflFI GACNNNGTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 2227
PkrI GCNGC 4 cut(s) 733, 892, 1500, 2292
PleI GAGTC 3 cut(s) 445, 1224, 1404
PpsI GAGTC 3 cut(s) 445, 1224, 1404
Ppu21I YACGTR 1 cut(s) 1605
PpuMI RGGWCCY 2 cut(s) 1348, 2365
PscI ACATGT 1 cut(s) 1711
PsiI TTATAA 2 cut(s) 206, 738
Psp5II RGGWCCY 2 cut(s) 1348, 2365
Psp6I CCWGG 4 cut(s) 137, 1069, 1190, 2067
PspEI GGTNACC 2 cut(s) 142, 167
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 4 cut(s) 137, 1069, 1190, 2067
PspN4I GGNNCC 4 cut(s) 537, 805, 834, 1815
PspPI GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
PspPPI RGGWCCY 2 cut(s) 1348, 2365
PstI CTGCAG 1 cut(s) 1619
PstNI CAGNNNCTG 2 cut(s) 473, 2074
PsuI RGATCY 2 cut(s) 55, 1516
PsyI GACNNNGTC 1 cut(s) 115
RsaI GTAC 6 cut(s) 1017, 1031, 1142, 1603, 1613, 1639
RsaNI GTAC 6 cut(s) 1016, 1030, 1141, 1602, 1612, 1638
RseI CAYNNNNRTG 3 cut(s) 251, 564, 1358
SapI GCTCTTC 1 cut(s) 1081
SaqAI TTAA 4 cut(s) 542, 1767, 2268, 2370
SatI GCNGC 4 cut(s) 732, 891, 1499, 2291
Sau3AI GATC 8 cut(s) 55, 83, 102, 181, 768, 1450, 1516, 2237
Sau96I GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
ScaI AGTACT 1 cut(s) 1017
SchI GAGTC 3 cut(s) 446, 1225, 1405
ScrFI CCNGG 4 cut(s) 139, 1071, 1192, 2069
SduI GDGCHC 6 cut(s) 37, 232, 1413, 1531, 1864, 1890
SfaNI GCATC 5 cut(s) 588, 999, 1279, 2190, 2316
SfcI CTRYAG 2 cut(s) 690, 1615
SinI GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
SmiMI CAYNNNNRTG 3 cut(s) 251, 564, 1358
SmlI CTYRAG 7 cut(s) 9, 122, 706, 857, 1406, 1732, 2369
SmoI CTYRAG 7 cut(s) 9, 122, 706, 857, 1406, 1732, 2369
SseBI AGGCCT 2 cut(s) 133, 952
SsiI CCGC 3 cut(s) 1011, 2027, 2291
SspI AATATT 1 cut(s) 1127
SspMI CTAG 3 cut(s) 401, 1806, 2330
StuI AGGCCT 2 cut(s) 133, 952
StyD4I CCNGG 4 cut(s) 137, 1069, 1190, 2067
StyI CCWWGG 2 cut(s) 761, 1033
TaaI ACNGT 9 cut(s) 68, 115, 200, 278, 694, 938, 1304, 1599, 1982
TaiI ACGT 5 cut(s) 251, 1107, 1582, 1607, 1882
TaqI TCGA 4 cut(s) 101, 180, 1819, 2198
TatI WGTACW 3 cut(s) 1015, 1140, 1637
TauI GCSGC 1 cut(s) 2293
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 4 cut(s) 542, 1767, 2268, 2370
Tru9I TTAA 4 cut(s) 542, 1767, 2268, 2370
TscAI CASTG 3 cut(s) 154, 1604, 1944
TseFI GTSAC 3 cut(s) 167, 278, 2076
TseI GCWGC 3 cut(s) 731, 890, 1498
Tsp45I GTSAC 3 cut(s) 167, 278, 2076
TspGWI ACGGA 3 cut(s) 425, 477, 816
TspRI CASTG 3 cut(s) 154, 1604, 1944
Tth111I GACNNNGTC 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 2227
Vha464I CTTAAG 1 cut(s) 2369
VpaK11BI GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
XapI RAATTY 6 cut(s) 160, 428, 641, 823, 1163, 1740
XbaI TCTAGA 2 cut(s) 400, 1805
XceI RCATGY 2 cut(s) 1715, 2254
XcmI CCANNNNNNNNNTGG 1 cut(s) 1106
XmiI GTMKAC 2 cut(s) 753, 2169
XmnI GAANNNNTTC 2 cut(s) 645, 1128
XspI CTAG 3 cut(s) 401, 1806, 2330
ZrmI AGTACT 1 cut(s) 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.