Rroxscaffold_2G00081310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000253
Physical Location & Seq
Reverse (-)
4331746 .. 4336848
5103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081310.1

Sequence Viewer

Length: 408 bp
ATGGCTCAAAAACAAGTAGAAAATGGGGGTACTAGTGGAGACCCCCCGCCGCTGGAGACAAATGATTCTGAACCAAACCCCAAGCAATCAAAGCCTAGGTTGAAAGATTCCAAAATCCAAGTCAAGATGTCCATGACTCTGTTAGTGGAGCCACTGAACCCATCGATTCCAACACCTCCGAGCATGTTGATGAAGGAACTTGAAAGTTTAAAGGCCACCAAACGAAGTATTATCGAGGTAGAAGAGAAAGCTCTACGACTGCGCAAGGATTATGAGATTGCAAAAGGTCACCTTGAAAAGAAAATAAGCTGGTCCGAGGCTTCTATGAGATTGCAAAAGGTGTTGAAAAGCATAAGCTGGTCCGAGGCTTCTCGAGCGTCAAGTGGAAAACTTGCAGAATTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.1

Weight (kDa)

9.55

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 263
AciI CCGC 2 cut(s) 47, 50
AcsI RAATTY 1 cut(s) 398
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 4 cut(s) 103, 203, 296, 346
AhlI ACTAGT 1 cut(s) 32
AluBI AGCT 3 cut(s) 251, 309, 357
AluI AGCT 3 cut(s) 251, 309, 357
Alw26I GTCTC 2 cut(s) 33, 50
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AspA2I CCTAGG 1 cut(s) 95
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 312, 360
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 2 cut(s) 312, 360
AvrII CCTAGG 1 cut(s) 95
BccI CCATC 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 33, 50
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 2 cut(s) 33, 96
BisI GCNGC 1 cut(s) 50
BlnI CCTAGG 1 cut(s) 95
BlsI GCNGC 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 312, 360
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 312, 360
BmiI GGNNCC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 74
Bsa29I ATCGAT 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 95, 315, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseCI ATCGAT 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 95, 315, 363
BseLI CCNNNNNNNGG 1 cut(s) 52
BshFI GGCC 1 cut(s) 215
BshVI ATCGAT 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 33, 50
BsnI GGCC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 372
BspACI CCGC 2 cut(s) 47, 50
BspANI GGCC 1 cut(s) 215
BspDI ATCGAT 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 33
BssECI CCNNGG 3 cut(s) 95, 315, 363
BssT1I CCWWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 237
BstEII GGTNACC 1 cut(s) 287
BstHHI GCGC 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 33, 50
BstMWI GCNNNNNNNGC 2 cut(s) 91, 374
BstNSI RCATGY 1 cut(s) 187
BstPI GGTNACC 1 cut(s) 287
Bsu15I ATCGAT 1 cut(s) 164
BsuRI GGCC 1 cut(s) 215
BsuTUI ATCGAT 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 312, 360
ClaI ATCGAT 1 cut(s) 164
CseI GACGC 1 cut(s) 366
Csp6I GTAC 1 cut(s) 30
CviAII CATG 2 cut(s) 133, 184
CviJI RGCY 9 cut(s) 5, 94, 151, 215, 251, 309, 320, 357, 368
CviKI_1 RGCY 9 cut(s) 5, 94, 151, 215, 251, 309, 320, 357, 368
CviQI GTAC 1 cut(s) 30
DraI TTTAAA 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 312, 360
Eco88I CYCGRG 1 cut(s) 372
Eco91I GGTNACC 1 cut(s) 287
EcoO65I GGTNACC 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 136, 187
FaiI YATR 5 cut(s) 134, 185, 273, 326, 353
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 2 cut(s) 132, 183
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 33, 96
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 215
HgaI GACGC 1 cut(s) 366
HhaI GCGC 1 cut(s) 264
Hin1II CATG 2 cut(s) 136, 187
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 4 cut(s) 65, 107, 136, 166
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 4 cut(s) 70, 180, 316, 364
Hpy188III TCNNGA 2 cut(s) 124, 372
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 281, 334, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 374
Hsp92II CATG 2 cut(s) 136, 187
HspAI GCGC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 38, 295, 343
MaeI CTAG 2 cut(s) 33, 96
MaeIII GTNAC 1 cut(s) 287
MboII GAAGA 1 cut(s) 254
MluCI AATT 1 cut(s) 398
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 4 cut(s) 186, 229, 310, 358
MseI TTAA 2 cut(s) 209, 402
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 91, 374
NlaIII CATG 2 cut(s) 136, 187
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 287
NsbI TGCGCA 1 cut(s) 263
NspI RCATGY 1 cut(s) 187
PaeR7I CTCGAG 1 cut(s) 372
PfeI GAWTC 3 cut(s) 65, 107, 166
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 2 cut(s) 312, 360
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 209, 402
SatI GCNGC 1 cut(s) 50
Sau96I GGNCC 2 cut(s) 312, 360
SchI GAGTC 1 cut(s) 130
SetI ASST 9 cut(s) 101, 178, 240, 253, 289, 294, 311, 342, 359
Sfr274I CTCGAG 1 cut(s) 372
SinI GGWCC 2 cut(s) 312, 360
SlaI CTCGAG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 1 cut(s) 398
SsiI CCGC 2 cut(s) 47, 50
SspMI CTAG 2 cut(s) 33, 96
StyI CCWWGG 1 cut(s) 95
TaqI TCGA 3 cut(s) 164, 234, 373
TasI AATT 1 cut(s) 398
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 3 cut(s) 65, 107, 166
Tru1I TTAA 2 cut(s) 209, 402
Tru9I TTAA 2 cut(s) 209, 402
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 312, 360
XapI RAATTY 1 cut(s) 398
XceI RCATGY 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 372
XmaJI CCTAGG 1 cut(s) 95
XspI CTAG 2 cut(s) 33, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.