Rh1CG072100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000253
Physical Location & Seq
Reverse (-)
14837323 .. 14837706
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG072100.1

Sequence Viewer

Length: 222 bp
ATGGAAGCTCCAGATCAAGTCATTAAGAATGAAGCGGTTATGCCAACCATTTGTTTGAGTGACACTTCTTCAAACCAGTCTCTATCAAGCCTTAACATGCTTCGCCCTGCAATTAAGCCTCTAAAAGCTGGAAAGTCGCAGCTTGAAGCATTCGTAACTGCTATTGAGAAGATGCTAGAGGTGGCGGACCAGTCATTAGCTACTACTAGGGTCCTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.9

Weight (kDa)

4.99

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 35, 185
AgsI TTSAA 2 cut(s) 72, 146
AluBI AGCT 4 cut(s) 8, 128, 142, 200
AluI AGCT 4 cut(s) 8, 128, 142, 200
Alw26I GTCTC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 187, 211
AvaII GGWCC 2 cut(s) 187, 211
BbvI GCAGC 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 2 cut(s) 176, 207
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme18I GGWCC 2 cut(s) 187, 211
BmgT120I GGNCC 2 cut(s) 187, 211
BmiI GGNNCC 1 cut(s) 212
BmsI GCATC 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 76, 190
BseNI ACTGG 2 cut(s) 76, 190
BseXI GCAGC 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 2 cut(s) 35, 185
BspLI GGNNCC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 76, 190
BssMI GATC 1 cut(s) 13
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 187, 211
CviAII CATG 1 cut(s) 97
CviJI RGCY 6 cut(s) 8, 90, 118, 128, 142, 200
CviKI_1 RGCY 6 cut(s) 8, 90, 118, 128, 142, 200
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EciI GGCGGA 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 187, 211
EcoO109I RGGNCCY 1 cut(s) 211
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 41, 98
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 2 cut(s) 176, 207
GluI GCNGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 110
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 24, 89, 114, 120, 203
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 162
MaeI CTAG 2 cut(s) 176, 207
MaeIII GTNAC 2 cut(s) 59, 154
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 60, 181
MluCI AATT 1 cut(s) 111
MnlI CCTC 2 cut(s) 129, 172
MseI TTAA 3 cut(s) 24, 93, 114
Mva1269I GAATGC 1 cut(s) 149
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 100
PctI GAATGC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 2 cut(s) 187, 211
PspPPI RGGWCCY 1 cut(s) 211
SaqAI TTAA 3 cut(s) 24, 93, 114
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 2 cut(s) 187, 211
SetI ASST 5 cut(s) 10, 130, 144, 183, 202
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 2 cut(s) 187, 211
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 111
SsiI CCGC 2 cut(s) 35, 185
SspMI CTAG 2 cut(s) 176, 207
TasI AATT 1 cut(s) 111
Tru1I TTAA 3 cut(s) 24, 93, 114
Tru9I TTAA 3 cut(s) 24, 93, 114
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 2 cut(s) 187, 211
XceI RCATGY 1 cut(s) 100
XspI CTAG 2 cut(s) 176, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.