Rh4CG032000

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000253
Physical Location & Seq
Forward (+)
6349260 .. 6355691
6432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG032000.1

Sequence Viewer

Length: 3057 bp
ATGGATGCACATGGACATATATGTACTGAACGAGCACTTAACAAGCGCGGGCAGGAAGCCATAGAGGGTCCAGAGTATAGGCGGTCTTCACCATTGCGTTCCGTACAAGTTGATGCCTCAGTGAAAGACAAAATGACATGGGTCAGCGAAGTGCGAGTGCATTCTGGGTATCTCACATTCAGTCATGATTCTGAAGATCAAGCCATAAAGACTTGCCGCTCCTACTGTGCTGTATTTCCAGCTCGTACCCTTGAGAAAGTTAATAATGAAGAGGATGGGGATTCCTTCATTCACCAAGAGAACTTTTATCCTGTTCTTTATAAAATGTTGAAAGACAAACAAGACTGGGGAGTTCATCTCTACTTTCGGGATCGTTCTACCTTTGAGCCTGGAGTGATGGAATGGACAGAATTAATATTAGATCATTTCACGGGGAAGCTGGACCAAGCAGGAATATATGGTGCCGTTGGTGTTTCTCGCTTCCCCTATCATTATTGTGGGAACACATGGAGAGCATTTTGCGAACTTTGGAGTCCTTTGACTAACACCTTACACCATGGGAATGGAGAGATGAGTGTGTCCCTTTATGATTTGAAGCTTATTGGTGGTCTTCCCATTCTGGGTGTCCCATATGAAGAATTCATTCCTGCAAATAAAGAATTACATCGTAATGGGAGATATCCGTATACCATTGTTGAACTTCTGCGAATACATTCTGAATTGAGCGCACCCAATAGCAAGACTTATGTTTCCTGGAGGCAATGGCTTGCTCATTTTTATCGGGGACGCTTGGTATACGCCGCCTATGGTGAGACTACATATCGGGGAGATCAAATGCAACAAAATATGTTCATGGGTAGAAAACCAGCTCTGGATATTTCAAAAGAAGGAGAACTTGCTGCTTTTCTAGCATTTTGGCTCAGCCGGTTTGTTTTGCCTTCTAATGATTCTAGAATCAGACCTGAAACCTTTTATATGGCAGGCTTAATGGCCCAGGGGGTCAAGGTTTCTCTTGCACCATCAGTTTTAGGCTATATTTATCATGGCCTTGGTGAGTTTGTGACTGATCCGAGAGGGCCTAAAGAGTCTCGAGGCTGCCTTCCTGTTCATTACGTGATCGGTTGGTTAGGAGAGCACTTTACTTGTTTGTATAGACGCCGAGCTGCAAGTGACATACCCGCACGTCACCCTCATTTGGCCAGGTATGCAGGTGTTGACGCTGAGAACTTAGACATTACCTCTGCTAGACTCGCTTTCAGAAGTAATGAATCTGTTGATTATCGTCCAAGTCCATACAATGAACAGAAAGGTTGCTTTTTGCTTGATGACAAAAGCCTGTTAGATGAACAATTTGAGTTCCTAGTCTGCATACGCTCTACCTTGCTACCCGTGAGGATGGGTATTGATCTTTGGCTGGAACCATACTACCCAAATAGGTTTGCACGGCAGTTTGGTTTTGACCAGGGAGTCCCATCAAACAAGTTATTATTTGCTGTTGAGAAAAGAAGACAGTGTTGCATTGAAGATCTAGCAAAAGCACAGCATATACTTCTTAGAGCTAATACCAGTGCCCGTTTTTACATCCCACGTTCTACTTATAATGGATCTTGCACTTGGATGTATTGTAGATGGTGGATGAGGGCATGTGCTCCATATTTGGGCCGATCCGTGTCTGCTGTTTATTTGACCCTAAGGAAGCAACCTTTGGAGAAAAGAAGTAATGTCTTTGTGATAAAATCTCTGAGGGAAGTCTCTTATAGTCTGCGAAAAGAAGTTTTGTTGACAGATATTGAGGAAGCGGATTCAACCACCCACATTAGGAAATCTTCCTCTACAGGAGACAATAAAAGGAAAAGAGATTGTACCAGGTCTGATAATTCAGGGGGAAGGAACCTCAAGCAAGCCCATAAAGATGAACGTAGTGATTTTGATGATGTTATTGCCGATAATGCTAACAATCTTCAGAAGAAACATGTTCCAGATAAAGGCACTAGTTCTTATGGTGCCAGAACCACTGCTGCGAAAGAACAGAGAGTTCAATCCCAAGACCAAAAGTCGACATCCAAAGGAACAGAGTCAAATTCAAAAGGAGCACGACCGCAGACCAGAGAGGCAGTGTTAAAGTTGAAGGAACTAGAGCCAAAGCCAAAGCCAAGACAGAGAGAATCAGGGCCAAAAGAGAAGCACCCAGAGACAAAAGTTGCAGTTGAGGAGCCATCGTTAAATGAGCCAGAGCTGAAGTCATTATCTGGCGGTAATTCCAACTCTCCTAGCAAAGCCACAGAGCATATTGGTTCAGATACTTGCTCCTCCCAGAGTTTTTGTGAAGAAATCATCCCATTGGTTGAGAGCCCGTTGTCTATATATCAGATCTTTAGCCCAAATATAAATGAGCATCGACGAGATTTCATTGTCACTGAGATACAAGACATTTTAAGTAAGCTGAGCTCTTCTGAATCTCCTAAAGAAGTACTTGTTCACCGTCAGGATATTAATTCTACAATTGCCCTTTTGACATCTATAATGGAGACTCTTGAGTCTGGCAGAAATGGGTTTGATTGGTTTGCCAAGACAGTTGATCAAATTTTTGAGTTAGCATCTCAACTTTTGCAAGGCATGAGCGCCATTGAGAAAGGTGCTGAAATTGATGTTGATCTTATCCAAGACTTAGCTCGTCGCCAAGAAGAGTGCCAAAATGCTAAGAAGACTCTTAATATGCAACTGTCAGACTTCAAAAAAGAACTTGCAGATTTAGAAGCCACAGAGAAGAGTGTTAGTGAAGCAGAAAAGCAGGCTCATGAGGCAATGGAACGAGCTAAACAATTGAGAGCTGCTTTTGAAGCTGCAAGAGAATCCCTTGAAGAGAAGATCAATGATTTGGAAAAATCTTCTGAAGAGCATAACCAACTAGATGAAGAGCTGCGTCAAAAAAGAATTCAAGCCCATGAAGATAAGCTTCCAGAATTTGAACAGGTGAAGGCCTCCTTCAAATCTCGGCAAGAGCAATTTGCCAACTTAATTAATTCTTTGACATCATTTGGTGCTCAACCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1018

Amino Acids

116.13

Weight (kDa)

6.77

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 151 - 546 4.2e-39 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 321, 1599
AarI CACCTGC 1 cut(s) 1199
AasI GACNNNNNNGTC 2 cut(s) 1466, 2536
Acc36I ACCTGC 1 cut(s) 1199
AccB1I GGYRCC 2 cut(s) 461, 2003
AccBSI CCGCTC 1 cut(s) 219
AccI GTMKAC 3 cut(s) 686, 795, 2057
AccII CGCG 1 cut(s) 48
AciI CCGC 8 cut(s) 48, 82, 217, 801, 1179, 1799, 2099, 2253
AclWI GGATC 4 cut(s) 378, 1061, 1612, 1659
AcoI YGGCCR 1 cut(s) 1197
AcsI RAATTY 5 cut(s) 638, 2080, 2583, 2934, 2963
AcuI CTGAAG 4 cut(s) 213, 1946, 2258, 2913
AcyI GRCGYC 1 cut(s) 1156
AfaI GTAC 5 cut(s) 25, 105, 247, 1864, 2472
AfiI CCNNNNNNNGG 5 cut(s) 620, 1195, 1658, 1818, 1985
AflIII ACRYGT 1 cut(s) 1972
AhdI GACNNNNNGTC 1 cut(s) 2053
AhlI ACTAGT 1 cut(s) 1991
AjiI CACGTC 1 cut(s) 1184
AjnI CCWGG 6 cut(s) 388, 752, 993, 1199, 1461, 1865
AjuI GAANNNNNNNTTGG 2 cut(s) 1688, 1720
Alw21I GWGCWC 6 cut(s) 37, 1137, 1651, 2095, 2450, 3046
Alw26I GTCTC 6 cut(s) 806, 1092, 1756, 1833, 2186, 2522
AlwI GGATC 4 cut(s) 378, 1061, 1612, 1659
Ama87I CYCGRG 1 cut(s) 1089
AoxI GGCC 7 cut(s) 990, 1045, 1076, 1197, 1660, 2171, 2979
ApeKI GCWGC 7 cut(s) 899, 1095, 1163, 2018, 2831, 2843, 2920
ApoI RAATTY 5 cut(s) 638, 2080, 2583, 2934, 2963
AseI ATTAAT 3 cut(s) 413, 2493, 3021
Asp700I GAANNNNTTC 2 cut(s) 642, 712
AspLEI GCGC 3 cut(s) 48, 728, 2624
AspS9I GGNCC 6 cut(s) 68, 442, 991, 1076, 1660, 2171
AsuHPI GGTGA 7 cut(s) 81, 284, 821, 1064, 1178, 2471, 2986
AvaI CYCGRG 1 cut(s) 1089
AvaII GGWCC 2 cut(s) 68, 442
AxyI CCTNAGG 1 cut(s) 1691
BaeGI GKGCMC 1 cut(s) 1573
BalI TGGCCA 1 cut(s) 1199
BanI GGYRCC 2 cut(s) 461, 2003
BanII GRGCYC 2 cut(s) 2354, 2450
BbsI GAAGAC 4 cut(s) 78, 602, 1513, 2711
Bbv12I GWGCWC 6 cut(s) 37, 1137, 1651, 2095, 2450, 3046
BbvI GCAGC 7 cut(s) 886, 1082, 1150, 2005, 2818, 2830, 2907
BccI CCATC 7 cut(s) 269, 391, 1027, 1390, 1480, 1623, 2224
BceAI ACGGC 2 cut(s) 449, 1460
BciT130I CCWGG 6 cut(s) 390, 754, 995, 1201, 1463, 1867
BclI TGATCA 1 cut(s) 2578
BcoDI GTCTC 6 cut(s) 806, 1092, 1756, 1833, 2186, 2522
BcuI ACTAGT 1 cut(s) 1991
BfaI CTAG 9 cut(s) 908, 951, 1245, 1361, 1529, 1992, 2135, 2271, 2909
BfmI CTRYAG 1 cut(s) 1833
BfoI RGCGCY 1 cut(s) 2625
BfuAI ACCTGC 1 cut(s) 1199
BglII AGATCT 2 cut(s) 1525, 2370
BisI GCNGC 9 cut(s) 217, 801, 900, 1096, 1164, 2019, 2832, 2844, 2921
BlpI GCTNAGC 2 cut(s) 920, 2444
BlsI GCNGC 9 cut(s) 218, 802, 901, 1097, 1165, 2020, 2833, 2845, 2922
BmcAI AGTACT 1 cut(s) 2472
Bme1390I CCNGG 6 cut(s) 390, 754, 995, 1201, 1463, 1867
Bme18I GGWCC 2 cut(s) 68, 442
BmeRI GACNNNNNGTC 1 cut(s) 2053
BmeT110I CYCGRG 1 cut(s) 1089
BmgBI CACGTC 1 cut(s) 1184
BmgT120I GGNCC 6 cut(s) 68, 442, 991, 1076, 1660, 2171
BmiI GGNNCC 6 cut(s) 69, 463, 1419, 1892, 2005, 2214
BmrFI CCNGG 6 cut(s) 390, 754, 995, 1201, 1463, 1867
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 3 cut(s) 103, 2404, 2606
BmuI ACTGGG 1 cut(s) 355
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 4 cut(s) 78, 602, 1513, 2711
BplI GAGNNNNNCTC 2 cut(s) 342, 374
BpmI CTGGAG 2 cut(s) 411, 775
Bpu1102I GCTNAGC 2 cut(s) 920, 2444
BpuEI CTTGAG 3 cut(s) 272, 1880, 2555
BsaAI YACGTR 1 cut(s) 1114
BsaBI GATNNNNATC 1 cut(s) 2652
BsaHI GRCGYC 1 cut(s) 1156
BsaJI CCNNGG 5 cut(s) 556, 993, 994, 1048, 1462
BsaXI ACNNNNNCTCC 2 cut(s) 2204, 2234
Bsc4I CCNNNNNNNGG 5 cut(s) 620, 1195, 1658, 1818, 1985
Bse118I RCCGGY 1 cut(s) 924
Bse1I ACTGG 2 cut(s) 350, 1566
Bse21I CCTNAGG 1 cut(s) 1691
Bse3DI GCAATG 3 cut(s) 92, 767, 2811
Bse8I GATNNNNATC 1 cut(s) 2652
BseBI CCWGG 6 cut(s) 390, 754, 995, 1201, 1463, 1867
BseDI CCNNGG 5 cut(s) 556, 993, 994, 1048, 1462
BseGI GGATG 8 cut(s) 10, 280, 1401, 1581, 1623, 1641, 2060, 2334
BseJI GATNNNNATC 1 cut(s) 2652
BseLI CCNNNNNNNGG 5 cut(s) 620, 1195, 1658, 1818, 1985
BseMI GCAATG 3 cut(s) 92, 767, 2811
BseMII CTCAG 6 cut(s) 132, 934, 1212, 1733, 2409, 2435
BseNI ACTGG 2 cut(s) 350, 1566
BseRI GAGGAG 2 cut(s) 2225, 2299
BseSI GKGCMC 1 cut(s) 1573
BseXI GCAGC 7 cut(s) 886, 1082, 1150, 2005, 2818, 2830, 2907
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 2099
BshFI GGCC 7 cut(s) 992, 1047, 1078, 1199, 1662, 2173, 2981
BshNI GGYRCC 2 cut(s) 461, 2003
BsiEI CGRYCG 1 cut(s) 2099
BsiHKAI GWGCWC 6 cut(s) 37, 1137, 1651, 2095, 2450, 3046
BsiHKCI CYCGRG 1 cut(s) 1089
BsiSI CCGG 1 cut(s) 925
BslFI GGGAC 4 cut(s) 565, 611, 798, 1454
BslI CCNNNNNNNGG 5 cut(s) 620, 1195, 1658, 1818, 1985
BsmAI GTCTC 6 cut(s) 806, 1092, 1756, 1833, 2186, 2522
BsmFI GGGAC 4 cut(s) 565, 611, 798, 1454
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 7 cut(s) 992, 1047, 1078, 1199, 1662, 2173, 2981
BsoBI CYCGRG 1 cut(s) 1089
Bsp1286I GDGCHC 8 cut(s) 37, 1137, 1573, 1651, 2095, 2354, 2450, 3046
Bsp1720I GCTNAGC 2 cut(s) 920, 2444
Bsp19I CCATGG 1 cut(s) 556
BspACI CCGC 8 cut(s) 48, 82, 217, 801, 1179, 1799, 2099, 2253
BspANI GGCC 7 cut(s) 992, 1047, 1078, 1199, 1662, 2173, 2981
BspCNI CTCAG 6 cut(s) 131, 933, 1213, 1734, 2410, 2436
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 2 cut(s) 184, 2797
BspLI GGNNCC 6 cut(s) 69, 463, 1419, 1892, 2005, 2214
BspMI ACCTGC 1 cut(s) 1199
BspPI GGATC 4 cut(s) 378, 1061, 1612, 1659
BspQI GCTCTTC 3 cut(s) 2455, 2889, 2910
BspT107I GGYRCC 2 cut(s) 461, 2003
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 3 cut(s) 92, 767, 2811
BsrFI RCCGGY 1 cut(s) 924
BsrI ACTGG 2 cut(s) 350, 1566
BssAI RCCGGY 1 cut(s) 924
BssECI CCNNGG 5 cut(s) 556, 993, 994, 1048, 1462
BssNAI GTATAC 2 cut(s) 687, 796
BssNI GRCGYC 1 cut(s) 1156
BssT1I CCWWGG 2 cut(s) 556, 1048
Bst1107I GTATAC 2 cut(s) 687, 796
Bst2UI CCWGG 6 cut(s) 390, 754, 995, 1201, 1463, 1867
Bst4CI ACNGT 5 cut(s) 227, 1512, 2483, 2575, 2724
Bst6I CTCTTC 7 cut(s) 264, 2455, 2679, 2762, 2856, 2889, 2910
BstACI GRCGYC 1 cut(s) 1156
BstBAI YACGTR 1 cut(s) 1114
BstC8I GCNNGC 5 cut(s) 50, 768, 982, 1902, 2793
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 8 cut(s) 10, 280, 1401, 1581, 1623, 1641, 2060, 2334
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 2625
BstHHI GCGC 3 cut(s) 48, 728, 2624
BstMAI GTCTC 6 cut(s) 806, 1092, 1756, 1833, 2186, 2522
BstMCI CGRYCG 1 cut(s) 2099
BstMWI GCNNNNNNNGC 6 cut(s) 908, 1205, 1250, 1949, 2801, 2840
BstNI CCWGG 6 cut(s) 390, 754, 995, 1201, 1463, 1867
BstNSI RCATGY 2 cut(s) 1647, 1976
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 6 cut(s) 388, 752, 993, 1199, 1461, 1865
BstSFI CTRYAG 1 cut(s) 1833
BstSLI GKGCMC 1 cut(s) 1573
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 7 cut(s) 886, 1082, 1150, 2005, 2818, 2830, 2907
BstV2I GAAGAC 4 cut(s) 78, 602, 1513, 2711
BstX2I RGATCY 3 cut(s) 1525, 1604, 2370
BstXI CCANNNNNNTGG 1 cut(s) 563
BstYI RGATCY 3 cut(s) 1525, 1604, 2370
BstZ17I GTATAC 2 cut(s) 687, 796
Bsu36I CCTNAGG 1 cut(s) 1691
BsuRI GGCC 7 cut(s) 992, 1047, 1078, 1199, 1662, 2173, 2981
BtgI CCRYGG 1 cut(s) 556
BtrI CACGTC 1 cut(s) 1184
BtsCI GGATG 8 cut(s) 10, 280, 1401, 1581, 1623, 1641, 2060, 2334
BtsI GCAGTG 2 cut(s) 2013, 2121
BtsIMutI CAGTG 6 cut(s) 126, 1517, 1573, 2013, 2121, 2415
BveI ACCTGC 1 cut(s) 1199
Cac8I GCNNGC 5 cut(s) 50, 768, 982, 1902, 2793
CciI TCATGA 2 cut(s) 184, 2797
CfoI GCGC 3 cut(s) 48, 728, 2624
Cfr10I RCCGGY 1 cut(s) 924
Cfr13I GGNCC 6 cut(s) 68, 442, 991, 1076, 1660, 2171
CseI GACGC 4 cut(s) 795, 1164, 1226, 2912
CsiI ACCWGGT 1 cut(s) 1865
Csp6I GTAC 5 cut(s) 24, 104, 246, 1863, 2471
CviQI GTAC 5 cut(s) 24, 104, 246, 1863, 2471
DrdI GACNNNNNNGTC 2 cut(s) 1466, 2536
DriI GACNNNNNGTC 1 cut(s) 2053
DseDI GACNNNNNNGTC 2 cut(s) 1466, 2536
EaeI YGGCCR 1 cut(s) 1197
Eam1104I CTCTTC 7 cut(s) 264, 2455, 2679, 2762, 2856, 2889, 2910
Eam1105I GACNNNNNGTC 1 cut(s) 2053
EarI CTCTTC 7 cut(s) 264, 2455, 2679, 2762, 2856, 2889, 2910
Ecl136II GAGCTC 1 cut(s) 2448
Eco130I CCWWGG 2 cut(s) 556, 1048
Eco147I AGGCCT 1 cut(s) 2981
Eco24I GRGCYC 2 cut(s) 2354, 2450
Eco32I GATATC 1 cut(s) 680
Eco47I GGWCC 2 cut(s) 68, 442
Eco53kI GAGCTC 1 cut(s) 2448
Eco57I CTGAAG 4 cut(s) 213, 1946, 2258, 2913
Eco81I CCTNAGG 1 cut(s) 1691
Eco88I CYCGRG 1 cut(s) 1089
EcoICRI GAGCTC 1 cut(s) 2448
EcoO109I RGGNCCY 1 cut(s) 1076
EcoRI GAATTC 2 cut(s) 638, 2934
EcoRII CCWGG 6 cut(s) 388, 752, 993, 1199, 1461, 1865
EcoRV GATATC 1 cut(s) 680
EcoT14I CCWWGG 2 cut(s) 556, 1048
EcoT38I GRGCYC 2 cut(s) 2354, 2450
ErhI CCWWGG 2 cut(s) 556, 1048
FalI AAGNNNNNCTT 8 cut(s) 879, 911, 2457, 2489, 2940, 2972, 2969, 3001
FaqI GGGAC 4 cut(s) 565, 611, 798, 1454
FauI CCCGC 2 cut(s) 41, 1186
FauNDI CATATG 1 cut(s) 631
FbaI TGATCA 1 cut(s) 2578
FblI GTMKAC 3 cut(s) 686, 795, 2057
Fnu4HI GCNGC 9 cut(s) 217, 801, 900, 1096, 1164, 2019, 2832, 2844, 2921
FokI GGATG 8 cut(s) 17, 287, 1408, 1568, 1630, 1648, 2047, 2321
FriOI GRGCYC 2 cut(s) 2354, 2450
Fsp4HI GCNGC 9 cut(s) 217, 801, 900, 1096, 1164, 2019, 2832, 2844, 2921
FspBI CTAG 9 cut(s) 908, 951, 1245, 1361, 1529, 1992, 2135, 2271, 2909
GlaI GCGC 3 cut(s) 47, 727, 2623
GluI GCNGC 9 cut(s) 217, 801, 900, 1096, 1164, 2019, 2832, 2844, 2921
GsuI CTGGAG 2 cut(s) 411, 775
HaeII RGCGCY 1 cut(s) 2625
HaeIII GGCC 7 cut(s) 992, 1047, 1078, 1199, 1662, 2173, 2981
HapII CCGG 1 cut(s) 925
HgaI GACGC 4 cut(s) 795, 1164, 1226, 2912
HhaI GCGC 3 cut(s) 48, 728, 2624
Hin1I GRCGYC 1 cut(s) 1156
Hin6I GCGC 3 cut(s) 46, 726, 2622
HinP1I GCGC 3 cut(s) 46, 726, 2622
HincII GTYRAC 3 cut(s) 1216, 1782, 2058
HindII GTYRAC 3 cut(s) 1216, 1782, 2058
HindIII AAGCTT 2 cut(s) 596, 2954
HpaII CCGG 1 cut(s) 925
HphI GGTGA 7 cut(s) 81, 284, 821, 1064, 1178, 2471, 2986
Hpy166II GTNNAC 6 cut(s) 687, 796, 1216, 1782, 2058, 2479
Hpy8I GTNNAC 6 cut(s) 687, 796, 1216, 1782, 2058, 2479
Hpy99I CGWCG 2 cut(s) 2403, 2679
HpyAV CCTTC 8 cut(s) 295, 881, 948, 1109, 1881, 2122, 2971, 2995
HpyCH4III ACNGT 5 cut(s) 227, 1512, 2483, 2575, 2724
HpyCH4IV ACGT 4 cut(s) 1113, 1183, 1588, 1918
HpyF10VI GCNNNNNNNGC 6 cut(s) 908, 1205, 1250, 1949, 2801, 2840
HpySE526I ACGT 4 cut(s) 1113, 1183, 1588, 1918
Hsp92I GRCGYC 1 cut(s) 1156
HspAI GCGC 3 cut(s) 46, 726, 2622
Ksp22I TGATCA 1 cut(s) 2578
LguI GCTCTTC 3 cut(s) 2455, 2889, 2910
LmnI GCTCC 5 cut(s) 224, 1654, 2090, 2212, 2312
Lsp1109I GCAGC 7 cut(s) 886, 1082, 1150, 2005, 2818, 2830, 2907
LweI GCATC 3 cut(s) 103, 2404, 2606
MabI ACCWGGT 1 cut(s) 1865
MaeI CTAG 9 cut(s) 908, 951, 1245, 1361, 1529, 1992, 2135, 2271, 2909
MaeII ACGT 4 cut(s) 1113, 1183, 1588, 1918
MaeIII GTNAC 4 cut(s) 1060, 1169, 1184, 2413
MbiI CCGCTC 1 cut(s) 219
MfeI CAATTG 2 cut(s) 2502, 2822
MflI RGATCY 3 cut(s) 1525, 1604, 2370
MhlI GDGCHC 8 cut(s) 37, 1137, 1573, 1651, 2095, 2354, 2450, 3046
MlsI TGGCCA 1 cut(s) 1199
MluNI TGGCCA 1 cut(s) 1199
MlyI GAGTC 8 cut(s) 541, 1094, 1242, 1476, 2084, 2524, 2546, 2701
MmeI TCCRAC 1 cut(s) 2286
Mox20I TGGCCA 1 cut(s) 1199
MroXI GAANNNNTTC 2 cut(s) 642, 712
MscI TGGCCA 1 cut(s) 1199
MslI CAYNNNNRTG 5 cut(s) 495, 561, 669, 1616, 1911
Msp20I TGGCCA 1 cut(s) 1199
MspI CCGG 1 cut(s) 925
MspR9I CCNGG 6 cut(s) 390, 754, 995, 1201, 1463, 1867
MunI CAATTG 2 cut(s) 2502, 2822
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 6 cut(s) 390, 754, 995, 1201, 1463, 1867
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 6 cut(s) 908, 1205, 1250, 1949, 2801, 2840
NcoI CCATGG 1 cut(s) 556
NdeI CATATG 1 cut(s) 631
NlaIV GGNNCC 6 cut(s) 69, 463, 1419, 1892, 2005, 2214
NmeAIII GCCGAG 2 cut(s) 1184, 2974
NmuCI GTSAC 4 cut(s) 1060, 1169, 1184, 2413
NspI RCATGY 2 cut(s) 1647, 1976
PacI TTAATTAA 1 cut(s) 3021
PaeR7I CTCGAG 1 cut(s) 1089
PagI TCATGA 2 cut(s) 184, 2797
PaqCI CACCTGC 1 cut(s) 1199
PasI CCCWGGG 1 cut(s) 994
PceI AGGCCT 1 cut(s) 2981
PciI ACATGT 1 cut(s) 1972
PciSI GCTCTTC 3 cut(s) 2455, 2889, 2910
PctI GAATGC 1 cut(s) 160
PdmI GAANNNNTTC 2 cut(s) 642, 712
PfeI GAWTC 9 cut(s) 188, 281, 947, 954, 1268, 1802, 2165, 2456, 2852
PfoI TCCNGGA 1 cut(s) 752
PkrI GCNGC 9 cut(s) 218, 802, 901, 1097, 1165, 2020, 2833, 2845, 2922
PleI GAGTC 8 cut(s) 540, 1093, 1242, 1475, 2083, 2524, 2545, 2701
PpsI GAGTC 8 cut(s) 540, 1093, 1242, 1475, 2083, 2524, 2545, 2701
Ppu21I YACGTR 1 cut(s) 1114
PscI ACATGT 1 cut(s) 1972
PshAI GACNNNNGTC 1 cut(s) 140
PshBI ATTAAT 3 cut(s) 413, 2493, 3021
PsiI TTATAA 2 cut(s) 321, 1599
Psp124BI GAGCTC 1 cut(s) 2450
Psp6I CCWGG 6 cut(s) 388, 752, 993, 1199, 1461, 1865
PspGI CCWGG 6 cut(s) 388, 752, 993, 1199, 1461, 1865
PspN4I GGNNCC 6 cut(s) 69, 463, 1419, 1892, 2005, 2214
PspPI GGNCC 6 cut(s) 68, 442, 991, 1076, 1660, 2171
PsuI RGATCY 3 cut(s) 1525, 1604, 2370
RsaI GTAC 5 cut(s) 25, 105, 247, 1864, 2472
RsaNI GTAC 5 cut(s) 24, 104, 246, 1863, 2471
RseI CAYNNNNRTG 5 cut(s) 495, 561, 669, 1616, 1911
SacI GAGCTC 1 cut(s) 2450
SalI GTCGAC 1 cut(s) 2056
SapI GCTCTTC 3 cut(s) 2455, 2889, 2910
SatI GCNGC 9 cut(s) 217, 801, 900, 1096, 1164, 2019, 2832, 2844, 2921
Sau96I GGNCC 6 cut(s) 68, 442, 991, 1076, 1660, 2171
ScaI AGTACT 1 cut(s) 2472
SchI GAGTC 8 cut(s) 541, 1094, 1242, 1476, 2084, 2524, 2546, 2701
ScrFI CCNGG 6 cut(s) 390, 754, 995, 1201, 1463, 1867
SduI GDGCHC 8 cut(s) 37, 1137, 1573, 1651, 2095, 2354, 2450, 3046
SexAI ACCWGGT 1 cut(s) 1865
SfaNI GCATC 3 cut(s) 103, 2404, 2606
SfcI CTRYAG 1 cut(s) 1833
Sfr274I CTCGAG 1 cut(s) 1089
SinI GGWCC 2 cut(s) 68, 442
SlaI CTCGAG 1 cut(s) 1089
SmiMI CAYNNNNRTG 5 cut(s) 495, 561, 669, 1616, 1911
SmlI CTYRAG 4 cut(s) 251, 1089, 1895, 2534
SmoI CTYRAG 4 cut(s) 251, 1089, 1895, 2534
SpeI ACTAGT 1 cut(s) 1991
SseBI AGGCCT 1 cut(s) 2981
SsiI CCGC 8 cut(s) 48, 82, 217, 801, 1179, 1799, 2099, 2253
SspI AATATT 1 cut(s) 417
SspMI CTAG 9 cut(s) 908, 951, 1245, 1361, 1529, 1992, 2135, 2271, 2909
SstI GAGCTC 1 cut(s) 2450
StuI AGGCCT 1 cut(s) 2981
StyD4I CCNGG 6 cut(s) 388, 752, 993, 1199, 1461, 1865
StyI CCWWGG 2 cut(s) 556, 1048
TaaI ACNGT 5 cut(s) 227, 1512, 2483, 2575, 2724
TaiI ACGT 4 cut(s) 1116, 1186, 1591, 1921
TaqI TCGA 3 cut(s) 1090, 2057, 2398
TatI WGTACW 2 cut(s) 23, 2470
TauI GCSGC 2 cut(s) 219, 803
TfiI GAWTC 9 cut(s) 188, 281, 947, 954, 1268, 1802, 2165, 2456, 2852
TscAI CASTG 6 cut(s) 126, 1517, 1573, 2020, 2121, 2422
TseFI GTSAC 4 cut(s) 1060, 1169, 1184, 2413
TseI GCWGC 7 cut(s) 899, 1095, 1163, 2018, 2831, 2843, 2920
Tsp45I GTSAC 4 cut(s) 1060, 1169, 1184, 2413
TspGWI ACGGA 3 cut(s) 91, 672, 1657
TspRI CASTG 6 cut(s) 126, 1517, 1573, 2020, 2121, 2422
VpaK11BI GGWCC 2 cut(s) 68, 442
VspI ATTAAT 3 cut(s) 413, 2493, 3021
XapI RAATTY 5 cut(s) 638, 2080, 2583, 2934, 2963
XbaI TCTAGA 1 cut(s) 950
XceI RCATGY 2 cut(s) 1647, 1976
XhoI CTCGAG 1 cut(s) 1089
XmiI GTMKAC 3 cut(s) 686, 795, 2057
XmnI GAANNNNTTC 2 cut(s) 642, 712
XspI CTAG 9 cut(s) 908, 951, 1245, 1361, 1529, 1992, 2135, 2271, 2909
ZrmI AGTACT 1 cut(s) 2472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.