Rh1AG073200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000253
Physical Location & Seq
Reverse (-)
12200945 .. 12201244
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG073200.1

Sequence Viewer

Length: 300 bp
ATGGATGTTGAACTTGAGGAGTGTAAGAAATCCAAGGGAAGTTTAGAGTCTCAGCTTGTGGGATCTTCCAAAGAGCTTGAAGCCTTGAAAGCTACAGAATCTGACATCATAGCAGATGAGCAGCGAGTTCAGAAGAGGCGATCAGAATATGATGCTAAGAGACAATCTCTTAAAGACAGACAATCTCTTGAAGACACTCTGCCGGGACTGATGGATTCCTTGAAAGAGCATGATGAAAGAGGCCAAAAGCTTCAAGAAGATAGAGCTGCTTATATGGCGCAGAAACTCTCGGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.33

Weight (kDa)

4.99

Isoelectric Point (pI)

74.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 70
AgsI TTSAA 6 cut(s) 11, 80, 88, 191, 223, 254
AluBI AGCT 5 cut(s) 55, 76, 92, 250, 266
AluI AGCT 5 cut(s) 55, 76, 92, 250, 266
Alw26I GTCTC 2 cut(s) 54, 154
AlwI GGATC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 121, 266
AspLEI GCGC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 133, 253
BccI CCATC 1 cut(s) 205
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 54, 154
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 2 cut(s) 122, 267
BlsI GCNGC 2 cut(s) 123, 268
Bme1390I CCNGG 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 133, 253
BshFI GGCC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 54, 154
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 62, 140
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 64
BspPI GGATC 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 62, 140
BssT1I CCWWGG 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 51, 156
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 2 cut(s) 65, 143
BstMAI GTCTC 2 cut(s) 54, 154
BstMBI GATC 2 cut(s) 62, 140
BstMWI GCNNNNNNNGC 2 cut(s) 89, 275
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 133, 253
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 280
CviAII CATG 1 cut(s) 230
CviJI RGCY 7 cut(s) 55, 76, 83, 92, 243, 250, 266
CviKI_1 RGCY 7 cut(s) 55, 76, 83, 92, 243, 250, 266
DdeI CTNAG 2 cut(s) 51, 156
DpnI GATC 2 cut(s) 64, 142
DpnII GATC 2 cut(s) 62, 140
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 233
FaiI YATR 5 cut(s) 110, 150, 231, 273, 275
FaqI GGGAC 1 cut(s) 219
FatI CATG 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 122, 267
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 122, 267
GlaI GCGC 1 cut(s) 279
GluI GCNGC 2 cut(s) 122, 267
HaeIII GGCC 1 cut(s) 243
HapII CCGG 1 cut(s) 203
HhaI GCGC 1 cut(s) 280
Hin1II CATG 1 cut(s) 233
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 3 cut(s) 47, 98, 215
HpaII CCGG 1 cut(s) 203
Hpy188I TCNGA 4 cut(s) 103, 132, 145, 292
Hpy188III TCNNGA 2 cut(s) 188, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 275
HpyF3I CTNAG 2 cut(s) 51, 156
Hsp92II CATG 1 cut(s) 233
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 2 cut(s) 62, 140
LpnPI CCDG 1 cut(s) 216
Lsp1109I GCAGC 2 cut(s) 133, 253
LweI GCATC 1 cut(s) 142
MalI GATC 2 cut(s) 64, 142
MboI GATC 2 cut(s) 62, 140
MboII GAAGA 4 cut(s) 57, 145, 203, 269
MflI RGATCY 1 cut(s) 62
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 3 cut(s) 10, 129, 233
MseI TTAA 1 cut(s) 171
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 89, 275
NciI CCSGG 1 cut(s) 204
NdeII GATC 2 cut(s) 62, 140
NlaIII CATG 1 cut(s) 233
PfeI GAWTC 2 cut(s) 98, 215
PkrI GCNGC 2 cut(s) 123, 268
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 101
PsuI RGATCY 1 cut(s) 62
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 122, 267
Sau3AI GATC 2 cut(s) 62, 140
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 204
SetI ASST 5 cut(s) 57, 78, 94, 252, 268
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 33
TfiI GAWTC 2 cut(s) 98, 215
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 2 cut(s) 121, 266
TspDTI ATGAA 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.