Rmu_sc0018873.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018873.1
OG0000253
Physical Location & Seq
Reverse (-)
5624 .. 6055
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018873.1_g000003.1.cds

Sequence Viewer

Length: 432 bp
atgctggagggggcggatcagacattggctactactaggatccttgagcagaatactaccatggatattgaactcgaggagtgtatgaaatccaagataacttttgagtctcaactcgcaagatcttccaaagagttagaagccttgaaaactacgaaatctaacatcatagcaaatgaacagcgagttcagaaaaggcgattagaatatgatgttaagaggcaatctcttgaagacactctgcaggttctgaagaactcctttaaagagcaagatgaaaaagggcaaaagtttcaagaagacaagtttgcttatatggcagagaaactctcggagattaagcaggttacggcttcatacaagttggaaacagaggtgtatcaaagcttgtttgattctttgctccctttattccatggtgccgcaccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.55

Weight (kDa)

5.21

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 235, 334
AccB1I GGYRCC 1 cut(s) 419
AciI CCGC 2 cut(s) 14, 423
AclWI GGATC 3 cut(s) 24, 34, 47
AcuI CTGAAG 1 cut(s) 272
AgsI TTSAA 4 cut(s) 71, 148, 233, 296
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 3 cut(s) 24, 34, 47
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 74
BamHI GGATCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 419
BbsI GAAGAC 2 cut(s) 240, 306
BceAI ACGGC 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 2 cut(s) 36, 430
BfmI CTRYAG 1 cut(s) 242
BfuAI ACCTGC 2 cut(s) 235, 334
BglII AGATCT 1 cut(s) 122
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 41, 421
BpiI GAAGAC 2 cut(s) 240, 306
BplI GAGNNNNNCTC 4 cut(s) 211, 243, 314, 346
BpmI CTGGAG 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 60, 415
BseDI CCNNGG 2 cut(s) 60, 415
BseRI GAGGAG 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 3 cut(s) 16, 39, 122
Bsp19I CCATGG 2 cut(s) 60, 415
BspACI CCGC 2 cut(s) 14, 423
BspLI GGNNCC 2 cut(s) 41, 421
BspMAI CTGCAG 1 cut(s) 246
BspMI ACCTGC 2 cut(s) 235, 334
BspPI GGATC 3 cut(s) 24, 34, 47
BspT107I GGYRCC 1 cut(s) 419
BssECI CCNNGG 2 cut(s) 60, 415
BssMI GATC 3 cut(s) 16, 39, 122
BssT1I CCWWGG 2 cut(s) 60, 415
BstDSI CCRYGG 2 cut(s) 60, 415
BstKTI GATC 3 cut(s) 19, 42, 125
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 3 cut(s) 16, 39, 122
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 242
BstV2I GAAGAC 2 cut(s) 240, 306
BstX2I RGATCY 2 cut(s) 39, 122
BstYI RGATCY 2 cut(s) 39, 122
BtgI CCRYGG 2 cut(s) 60, 415
BveI ACCTGC 2 cut(s) 235, 334
CaiI CAGNNNCTG 1 cut(s) 250
CviAII CATG 2 cut(s) 61, 416
CviJI RGCY 4 cut(s) 29, 143, 353, 387
CviKI_1 RGCY 4 cut(s) 29, 143, 353, 387
DpnI GATC 3 cut(s) 18, 41, 124
DpnII GATC 3 cut(s) 16, 39, 122
DraI TTTAAA 1 cut(s) 265
EciI GGCGGA 1 cut(s) 29
Eco130I CCWWGG 2 cut(s) 60, 415
Eco57I CTGAAG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 74
EcoT14I CCWWGG 2 cut(s) 60, 415
ErhI CCWWGG 2 cut(s) 60, 415
FaeI CATG 2 cut(s) 64, 419
FaiI YATR 8 cut(s) 62, 86, 170, 210, 315, 317, 358, 417
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 2 cut(s) 60, 415
Fnu4HI GCNGC 1 cut(s) 423
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 2 cut(s) 36, 430
GluI GCNGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 26
Hin1II CATG 2 cut(s) 64, 419
HindIII AAGCTT 1 cut(s) 385
HinfI GANTC 2 cut(s) 107, 395
Hpy188I TCNGA 4 cut(s) 21, 192, 252, 334
Hpy188III TCNNGA 2 cut(s) 230, 296
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
Hsp92II CATG 2 cut(s) 64, 419
Kzo9I GATC 3 cut(s) 16, 39, 122
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 2 cut(s) 230, 329
MaeI CTAG 2 cut(s) 36, 430
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 18, 41, 124
MboI GATC 3 cut(s) 16, 39, 122
MboII GAAGA 4 cut(s) 117, 245, 265, 311
MflI RGATCY 2 cut(s) 39, 122
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 3 cut(s) 70, 213, 367
MseI TTAA 3 cut(s) 216, 264, 339
MwoI GCNNNNNNNGC 1 cut(s) 317
NcoI CCATGG 2 cut(s) 60, 415
NdeII GATC 3 cut(s) 16, 39, 122
NlaIII CATG 2 cut(s) 64, 419
NlaIV GGNNCC 2 cut(s) 41, 421
PaeR7I CTCGAG 1 cut(s) 74
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 41, 421
PspXI VCTCGAGB 1 cut(s) 74
PstI CTGCAG 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 39, 122
SaqAI TTAA 3 cut(s) 216, 264, 339
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 3 cut(s) 16, 39, 122
SchI GAGTC 1 cut(s) 116
SetI ASST 4 cut(s) 249, 348, 378, 389
SfcI CTRYAG 1 cut(s) 242
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 44, 74
SmoI CTYRAG 2 cut(s) 44, 74
SsiI CCGC 2 cut(s) 14, 423
SspMI CTAG 2 cut(s) 36, 430
StyI CCWWGG 2 cut(s) 60, 415
TaqI TCGA 1 cut(s) 75
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 3 cut(s) 216, 264, 339
Tru9I TTAA 3 cut(s) 216, 264, 339
TspDTI ATGAA 4 cut(s) 101, 192, 291, 345
XhoI CTCGAG 1 cut(s) 74
XspI CTAG 2 cut(s) 36, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.