Rmu_sc0005747.1_g000018

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005747.1
OG0000253
Physical Location & Seq
Reverse (-)
76105 .. 76845
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005747.1_g000018.1.cds

Sequence Viewer

Length: 651 bp
atggatgctcaaggatttctttgttctgagcgagccccaaagaagcaagggaaagatcttgactacagtcctgaataccgaagatcgttcgatcctcatgccgaagatggtgttataaagaatgttcgctatttcggtgctcattttgatgctcacacgttgatgaaggtgaacaatgaagaggacggtgacaacaagttcccagttggagaagaattttacccagcccttcatagaatgttgaagtgtaagaaagactggggtgaagacttttgtttttgtggtcaggccatatttgagcatggcattctagaatggacggaaaccaccctaactgaatttgaagagacattagacaaagccggtatccttggtgtagttgctgtttcccgttatccgtatgagtattgcagtaatgtgtggatggcattctgtgagctgtgggggcctttaacaaacacttttcaccatgcagatgaggaaatgagcatctctttgcatgatttaaatgttattggaggattgccggtttcaggagaaccatacgaagaatttgttcctccaaacaaagatctagtgaaggttgaattatatccttctacggttgcaggagctcttgagggtttacacctatatgtgcgctgcttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

216

Amino Acids

24.61

Weight (kDa)

4.78

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 116, 649
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 3 cut(s) 215, 338, 551
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 3 cut(s) 244, 344, 587
AluBI AGCT 2 cut(s) 439, 614
AluI AGCT 2 cut(s) 439, 614
Alw21I GWGCWC 2 cut(s) 142, 616
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 1 cut(s) 86
AoxI GGCC 2 cut(s) 288, 446
ApeKI GCWGC 1 cut(s) 642
ApoI RAATTY 3 cut(s) 215, 338, 551
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 4 cut(s) 181, 200, 275, 458
BanII GRGCYC 2 cut(s) 37, 616
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 2 cut(s) 142, 616
BbvI GCAGC 1 cut(s) 629
BccI CCATC 2 cut(s) 101, 418
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciVI GTATCC 1 cut(s) 377
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 2 cut(s) 311, 575
BfmI CTRYAG 1 cut(s) 64
BfuI GTATCC 1 cut(s) 377
BglII AGATCT 2 cut(s) 55, 571
BisI GCNGC 1 cut(s) 643
BlsI GCNGC 1 cut(s) 644
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 1 cut(s) 447
BmrI ACTGGG 2 cut(s) 197, 268
BmsI GCATC 2 cut(s) 139, 498
BmuI ACTGGG 2 cut(s) 197, 268
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 638
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse118I RCCGGY 2 cut(s) 362, 526
Bse1I ACTGG 2 cut(s) 203, 263
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 2 cut(s) 10, 429
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 203, 263
BseXI GCAGC 1 cut(s) 629
BseYI CCCAGC 1 cut(s) 223
BshFI GGCC 2 cut(s) 290, 448
BsiHKAI GWGCWC 2 cut(s) 142, 616
BsiSI CCGG 2 cut(s) 363, 527
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 1 cut(s) 341
BsmI GAATGC 2 cut(s) 306, 428
BsnI GGCC 2 cut(s) 290, 448
Bsp1286I GDGCHC 3 cut(s) 37, 142, 616
Bsp143I GATC 4 cut(s) 55, 83, 91, 571
BspANI GGCC 2 cut(s) 290, 448
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 1 cut(s) 86
BsrFI RCCGGY 2 cut(s) 362, 526
BsrI ACTGG 2 cut(s) 203, 263
BssAI RCCGGY 2 cut(s) 362, 526
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 4 cut(s) 55, 83, 91, 571
BssT1I CCWWGG 1 cut(s) 370
Bst4CI ACNGT 3 cut(s) 68, 188, 604
Bst6I CTCTTC 2 cut(s) 174, 339
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 10, 429
BstHHI GCGC 1 cut(s) 642
BstKTI GATC 4 cut(s) 58, 86, 94, 574
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 4 cut(s) 55, 83, 91, 571
BstMWI GCNNNNNNNGC 1 cut(s) 445
BstPAI GACNNNNGTC 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 629
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 55, 571
BstYI RGATCY 2 cut(s) 55, 571
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 2 cut(s) 290, 448
BtsCI GGATG 2 cut(s) 10, 429
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 642
Cfr10I RCCGGY 2 cut(s) 362, 526
Cfr13I GGNCC 1 cut(s) 446
CviAII CATG 4 cut(s) 98, 302, 470, 500
CviJI RGCY 7 cut(s) 35, 227, 290, 362, 439, 448, 614
CviKI_1 RGCY 7 cut(s) 35, 227, 290, 362, 439, 448, 614
DdeI CTNAG 1 cut(s) 27
DpnI GATC 4 cut(s) 57, 85, 93, 573
DpnII GATC 4 cut(s) 55, 83, 91, 571
DraI TTTAAA 1 cut(s) 507
Eam1104I CTCTTC 2 cut(s) 174, 339
EarI CTCTTC 2 cut(s) 174, 339
Ecl136II GAGCTC 1 cut(s) 614
Eco130I CCWWGG 1 cut(s) 370
Eco24I GRGCYC 2 cut(s) 37, 616
Eco53kI GAGCTC 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 446
EcoT14I CCWWGG 1 cut(s) 370
EcoT38I GRGCYC 2 cut(s) 37, 616
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 4 cut(s) 101, 305, 473, 503
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 4 cut(s) 97, 301, 469, 499
Fnu4HI GCNGC 1 cut(s) 643
FokI GGATG 2 cut(s) 17, 436
FriOI GRGCYC 2 cut(s) 37, 616
Fsp4HI GCNGC 1 cut(s) 643
FspBI CTAG 2 cut(s) 311, 575
GlaI GCGC 1 cut(s) 641
GluI GCNGC 1 cut(s) 643
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 290, 448
HapII CCGG 2 cut(s) 363, 527
HhaI GCGC 1 cut(s) 642
Hin1II CATG 4 cut(s) 101, 305, 473, 503
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HpaII CCGG 2 cut(s) 363, 527
HphI GGTGA 4 cut(s) 181, 200, 275, 458
Hpy166II GTNNAC 2 cut(s) 172, 626
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 5 cut(s) 59, 71, 311, 534, 617
Hpy8I GTNNAC 2 cut(s) 172, 626
HpyAV CCTTC 4 cut(s) 160, 239, 574, 606
HpyCH4III ACNGT 3 cut(s) 68, 188, 604
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 4 cut(s) 411, 473, 499, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 445
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 4 cut(s) 101, 305, 473, 503
HspAI GCGC 1 cut(s) 640
Kzo9I GATC 4 cut(s) 55, 83, 91, 571
LmnI GCTCC 1 cut(s) 611
LpnPI CCDG 9 cut(s) 84, 216, 237, 244, 272, 376, 519, 540, 594
Lsp1109I GCAGC 1 cut(s) 629
LweI GCATC 2 cut(s) 139, 498
MaeI CTAG 2 cut(s) 311, 575
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 188
MalI GATC 4 cut(s) 57, 85, 93, 573
MboI GATC 4 cut(s) 55, 83, 91, 571
MboII GAAGA 7 cut(s) 93, 116, 191, 224, 278, 356, 560
MflI RGATCY 2 cut(s) 55, 571
MhlI GDGCHC 3 cut(s) 37, 142, 616
MluCI AATT 4 cut(s) 215, 338, 551, 587
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 6 cut(s) 105, 175, 472, 512, 570, 613
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 2 cut(s) 452, 506
MslI CAYNNNNRTG 4 cut(s) 147, 161, 474, 633
MspI CCGG 2 cut(s) 363, 527
Mva1269I GAATGC 2 cut(s) 306, 428
MwoI GCNNNNNNNGC 1 cut(s) 445
NdeII GATC 4 cut(s) 55, 83, 91, 571
NlaIII CATG 4 cut(s) 101, 305, 473, 503
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 188
PctI GAATGC 2 cut(s) 306, 428
PdmI GAANNNNTTC 1 cut(s) 555
PkrI GCNGC 1 cut(s) 644
PshAI GACNNNNGTC 1 cut(s) 66
PsiI TTATAA 2 cut(s) 116, 649
Psp124BI GAGCTC 1 cut(s) 616
PspFI CCCAGC 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 1 cut(s) 446
PsuI RGATCY 2 cut(s) 55, 571
RseI CAYNNNNRTG 4 cut(s) 147, 161, 474, 633
SacI GAGCTC 1 cut(s) 616
SaqAI TTAA 2 cut(s) 452, 506
SatI GCNGC 1 cut(s) 643
Sau3AI GATC 4 cut(s) 55, 83, 91, 571
Sau96I GGNCC 1 cut(s) 446
SduI GDGCHC 3 cut(s) 37, 142, 616
SetI ASST 6 cut(s) 161, 171, 441, 585, 616, 633
SfaNI GCATC 2 cut(s) 139, 498
SfcI CTRYAG 1 cut(s) 64
SmiI ATTTAAAT 1 cut(s) 507
SmiMI CAYNNNNRTG 4 cut(s) 147, 161, 474, 633
SmlI CTYRAG 2 cut(s) 9, 617
SmoI CTYRAG 2 cut(s) 9, 617
Sse9I AATT 4 cut(s) 215, 338, 551, 587
SspMI CTAG 2 cut(s) 311, 575
SstI GAGCTC 1 cut(s) 616
StyI CCWWGG 1 cut(s) 370
SwaI ATTTAAAT 1 cut(s) 507
TaaI ACNGT 3 cut(s) 68, 188, 604
TaiI ACGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 90
TasI AATT 4 cut(s) 215, 338, 551, 587
Tru1I TTAA 2 cut(s) 452, 506
Tru9I TTAA 2 cut(s) 452, 506
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 642
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 179, 192, 221
TspGWI ACGGA 2 cut(s) 335, 387
XapI RAATTY 3 cut(s) 215, 338, 551
XbaI TCTAGA 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 2 cut(s) 311, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.