Rmu_co8195922.1_g000001

Conserved gene of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8195922.1
OG0000253
Physical Location & Seq
Reverse (-)
2 .. 543
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8195922.1_g000001.1.cds

Sequence Viewer

Length: 447 bp
atggtgtcccttgagagtaggcctacctgggttaccactgccaacttgaattctggccatcttagattcgatcctcatgctgaagacgttggagaagatttttaccctgcccttcataaaatgctgaaatgtaagaaagactggggtgaagacttctattttcgaggtcgggccgtatttgagcatggcattttagaatggatggaaaccatcttaactgacattgaagacgcattagacaaagccggtacctttggtgcaattgatgtttctctttatccatatgagtattgtagtaatgtgtggagagcattctgtgagctgtgggggcctttgacaaacatttttcatcatgcaaatggagaaatgagcatctctttgcatgatttgaatgttattggaggattgccagtttcgggagaaccatacaaagaattcgttcctcca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

149

Amino Acids

16.98

Weight (kDa)

4.81

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 248
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 49, 434
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 3 cut(s) 49, 227, 391
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
AlwI GGATC 1 cut(s) 65
AoxI GGCC 4 cut(s) 20, 55, 171, 329
ApoI RAATTY 2 cut(s) 49, 434
Asp700I GAANNNNTTC 1 cut(s) 438
Asp718I GGTACC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 171, 329
AsuHPI GGTGA 1 cut(s) 158
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 248
BbsI GAAGAC 3 cut(s) 90, 156, 234
BccI CCATC 3 cut(s) 66, 196, 218
BceAI ACGGC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 171, 329
BmiI GGNNCC 2 cut(s) 250, 330
BmrFI CCNGG 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 381
BmuI ACTGGG 1 cut(s) 151
BpiI GAAGAC 3 cut(s) 90, 156, 234
BpuEI CTTGAG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 146, 410
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 416
BseNI ACTGG 2 cut(s) 146, 410
BshFI GGCC 4 cut(s) 22, 57, 173, 331
BshNI GGYRCC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 416
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 4 cut(s) 22, 57, 173, 331
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 4 cut(s) 22, 57, 173, 331
BspLI GGNNCC 2 cut(s) 250, 330
BspPI GGATC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 2 cut(s) 146, 410
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 62
BstEII GGTNACC 1 cut(s) 31
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 26
BstV2I GAAGAC 3 cut(s) 90, 156, 234
BsuRI GGCC 4 cut(s) 22, 57, 173, 331
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 171, 329
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 249
CviAII CATG 4 cut(s) 77, 185, 353, 383
CviJI RGCY 6 cut(s) 22, 57, 173, 245, 322, 331
CviKI_1 RGCY 6 cut(s) 22, 57, 173, 245, 322, 331
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 62
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 31
EcoRI GAATTC 2 cut(s) 49, 434
EcoRII CCWGG 1 cut(s) 26
FaeI CATG 4 cut(s) 80, 188, 356, 386
FaiI YATR 8 cut(s) 78, 117, 186, 283, 285, 354, 384, 427
FatI CATG 4 cut(s) 76, 184, 352, 382
FauNDI CATATG 1 cut(s) 283
FokI GGATG 1 cut(s) 214
HaeIII GGCC 4 cut(s) 22, 57, 173, 331
HapII CCGG 1 cut(s) 246
HgaI GACGC 1 cut(s) 239
Hin1II CATG 4 cut(s) 80, 188, 356, 386
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 246
HphI GGTGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 417
HpyAV CCTTC 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 260, 356, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 4 cut(s) 80, 188, 356, 386
KpnI GGTACC 1 cut(s) 252
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 7 cut(s) 13, 39, 40, 120, 127, 259, 423
LweI GCATC 1 cut(s) 381
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 4 cut(s) 95, 107, 161, 239
MfeI CAATTG 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 3 cut(s) 49, 261, 434
MluNI TGGCCA 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 84, 158, 395
Mox20I TGGCCA 1 cut(s) 57
MroXI GAANNNNTTC 1 cut(s) 438
MscI TGGCCA 1 cut(s) 57
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 28
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 311
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 328
NdeI CATATG 1 cut(s) 283
NdeII GATC 1 cut(s) 70
NlaIII CATG 4 cut(s) 80, 188, 356, 386
NlaIV GGNNCC 2 cut(s) 250, 330
PceI AGGCCT 1 cut(s) 22
PctI GAATGC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 31
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 250, 330
PspPI GGNCC 2 cut(s) 171, 329
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 1 cut(s) 215
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 2 cut(s) 171, 329
ScrFI CCNGG 1 cut(s) 28
SetI ASST 5 cut(s) 29, 90, 169, 254, 324
SfaNI GCATC 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 3 cut(s) 49, 261, 434
SseBI AGGCCT 1 cut(s) 22
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 90
TaqI TCGA 2 cut(s) 69, 163
TasI AATT 3 cut(s) 49, 261, 434
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 104, 338
TspRI CASTG 1 cut(s) 43
XapI RAATTY 2 cut(s) 49, 434
XmnI GAANNNNTTC 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.