Rh2DG120800

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000253
Physical Location & Seq
Reverse (-)
10029789 .. 10032557
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG120800.1

Sequence Viewer

Length: 2637 bp
ATGGATGCTCAAGGATTTCTTTGCTCCGAGCGAGCCCCAAAGAAGCAAGGGAAAGATCTTGACTACGGTCCTGAATACCGAAGATCGTTACCTTTGAACTCGATCAGCCTCACAGTGTCCCTTGAGAGTAGGCCTACCTGGGTTACCACTGCCAACTTGAATTCTGGTTACCTTAGATTCGATCCTCATGCCGAAGACGGTGTTATAAAGAATGTCCGCTATTTCGGTGCTCATTTTGATGCTCACACGTTGATGAAGGTGAACAATGAAGAGGACGGTGACAACAAGTTCCCAGTTGGAGAAGATTTTTACCCAGCCCTTCATAGAATGCTGAAGTTTGCTGTTTCCCGTTATCCGTATGAGTATTGCAGTAATGTGTGGAGGGCATTCTGTGAGCTGTGGGGGCCTTTAACAAACAGTTTTCACCATGCAGATGGGGAAATGAGCATCTCTTTGCATGATTTGAATGTTATTGGAGGATTGCCGGTTTCAGGAGAACCATACGAAGAATTCATTCCTCCAAACAAAGATCTGGTGAAGGTTGAATTATACCATTCTACAGTTGCAGAGCTCTTGAGGATTTATACCTATCTGTGCGCTGCTTACAAAAGCAGATATGTCTACTGGCCATGGTGGATAGAACATTTTTATCGTGGGGAGATAATTTACGGAGCCTATGGTGAATGTAAGAATTCTGGGGTTCCGAAATTGAGAGAACCAAAGCTTGAGTTGAAGATTTCAAAGCAAGGAAGACTGGCTGCATTCCTCGCGTTCTGGCTTAGCAGGTTCGTTCTCCCTTCCAACAGTAAGAAGATAAGGCCTGAGACTTTCTATATGGCCTCTTTGATGGCACAGGGCATCAGAGTATCTCTTGCACCCACAGTACTGGGTTATGTGTACCATGGTCTTGGTGAGATGGCTACCCACTCTGCTGGTCCTGGCTCTTCCAACTCTTGTTTGCCTATCCACTACGTCATTGGCTGGCTCGGAGAATATTTTCCTTATCTGTACTCATCACGCTCTGATAAAGAATTCCCAGGAGGGTATCCTCGTTTGGCCAGGTATGCAGGTATTCAAGGCAGGAGTCTAAGCATCACAGAGGCTCGTATGGTTTTCAGGACCAACAAATCTGTCGTGCATCGCCCTATCTCTGTAGCCTGTGAAAAAGACCGTTTTTTGCTTGATGACGACAAATTGCCTGATGTGTTATTTGAGGTCCTCGTCTGTATGCGTTCTGCAGTGCTGCCTGTGCGAGTTGGCGAGAGTCTTTTCCTTGAGCCCTATTATCCGAACAGGTTTGCTCGTCAATTTGGTCTTGATCAGAGTGTTCCCTCCAACAAACTAACCTTTAGTGTTTCCAAAAGGCAGCAATGTGGTGTTGAGGATCTGCTGAGGGCACAGACTATCCTGTATAGGAAGAACACTACCTCTCGTTTCTTTATCCCACGTTCTTCTCGTTCTGGACAGTGTACATGGTGGTACTGCAGGTGGTGGTCAAGAGCTTGTACTCCTTACTTGGGGTTATCAGTGTCAAAAACCTTCACGACTTTGAACAAGCGCCCTCCTGAAAAGTCACAGAGTGTTTTCGTCGTGCAGAACTTGAGAGAAATTTCTACTGGTTTGAAACAAGAGATTAAAATCTCAAAGGTGGACAAGTCTCTCGGGAAATCTTCTAGAAAGGCTCCTCGAAAATCTCGTGACGGAGCTTCTTGTTCTAAGGCCAGCAGGGCCCATCCCACAGATGAACGTGGTGGACACAAAAGAGTTAGGCTTGAAAAGGTAGTTGAAGAGACTGTCGTCATCCCAGTGAAGTCGTCTTCAAATGGTGAGCATGAGTTGGATGTTCACAGTCCTTTGAGAGCGGAAGCTCCAAATCAGGTCATTGAGAATGAAGCGGTTATGCCAACCATCTGTTTGAGTGAAGCTTCTTCAAACCAGGCTCTGTCACCATTGTCAAATCTGGAGAACTCCATATCTAATTTGCTTGGTTCAGAACTGCCATCCTTCAAGAAGAATTACCTCATTGCTCAGGTTGTAGACATTTACGCTAAAGTTTCTTCATCTTCGACGCCAAAGGAGCTGTTAGTCCATGTTTTGGACATTAGATCAAGTCTTGACATGCTTCACCCTGCAATTAAGCCTCTGAAAGCTGGAAAGTCGCAACTTGAAGCGTTCGTAACTGCTATTGAGAAAATGCTGGAGGTGGCGGACCAGTCGTTAGCTACTACTGAGGTCCTTGAGCAGAAAACTACCATGGATGTTGAACTTGAGAAGTGTAAGAAATCCAAGGGAAGTTTAGAGTCTCAGCTTGCGGGATCTTCCAAAGAGCTTGAAGCCTTGAAAGCCACGGAATCTGATATCATAGCAGATGAGCAGCGTGTTCAGAAGAGGCGATCAGAATATAATGCTAAGAGACAATCTCTTGAAGACACTCTACAGGAACTGAAGGATTCCTTGAAAGAGCATGATGAAAGAGGCCAGAAGCTTCAAGAAGACAGAGCTGCTTATATGGAGGAGAAACTCCCTGAGATTGAGCAGGCTTCGGCTTCGTATAAGTTGGAAACAGAGGCGTATCAGAGCCTGTTCGATTCTTTTTTCCCGTTATTCCATGTGTGCACCACCCCAGTACAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

878

Amino Acids

99.38

Weight (kDa)

8.52

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 123 - 499 1.1e-38 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 206
AarI CACCTGC 1 cut(s) 1476
Acc36I ACCTGC 3 cut(s) 774, 1058, 1476
AccB7I CCANNNNNTGG 1 cut(s) 2095
AccBSI CCGCTC 1 cut(s) 1862
AccI GTMKAC 2 cut(s) 621, 2037
AccII CGCG 1 cut(s) 770
AciI CCGC 5 cut(s) 217, 1862, 1895, 2207, 2312
AclWI GGATC 3 cut(s) 176, 1392, 2323
AcoI YGGCCR 2 cut(s) 626, 1056
AcsI RAATTY 5 cut(s) 160, 509, 691, 1031, 1608
AcuI CTGAAG 2 cut(s) 353, 2465
AcyI GRCGYC 1 cut(s) 2069
AdeI CACNNNGTG 1 cut(s) 1580
AfaI GTAC 7 cut(s) 885, 899, 1010, 1471, 1481, 1507, 2628
AfiI CCNNNNNNNGG 3 cut(s) 491, 1517, 2095
AflIII ACRYGT 1 cut(s) 246
AjnI CCWGG 5 cut(s) 137, 937, 1036, 1058, 1935
Alw21I GWGCWC 3 cut(s) 232, 573, 2618
Alw26I GTCTC 5 cut(s) 818, 1662, 1784, 2307, 2407
Alw44I GTGCAC 1 cut(s) 2614
AlwI GGATC 3 cut(s) 176, 1392, 2323
AlwNI CAGNNNCTG 3 cut(s) 1942, 2443, 2581
Ama87I CYCGRG 1 cut(s) 1661
AoxI GGCC 9 cut(s) 131, 404, 626, 818, 837, 1056, 1719, 1728, 2476
ApaI GGGCCC 1 cut(s) 1732
ApaLI GTGCAC 1 cut(s) 2614
ApeKI GCWGC 6 cut(s) 599, 758, 1243, 1366, 2374, 2501
ApoI RAATTY 5 cut(s) 160, 509, 691, 1031, 1608
Asp700I GAANNNNTTC 2 cut(s) 513, 996
AspLEI GCGC 2 cut(s) 599, 1560
AspS9I GGNCC 9 cut(s) 68, 404, 935, 1119, 1216, 1728, 1729, 2209, 2233
AsuHPI GGTGA 9 cut(s) 271, 290, 416, 547, 692, 923, 1838, 1938, 2117
AvaI CYCGRG 1 cut(s) 1661
AvaII GGWCC 6 cut(s) 68, 935, 1119, 1216, 2209, 2233
BaeGI GKGCMC 3 cut(s) 1399, 1732, 2618
BalI TGGCCA 2 cut(s) 628, 1058
BanII GRGCYC 4 cut(s) 37, 573, 1281, 1732
BarI GAAGNNNNNNTAC 2 cut(s) 2418, 2450
BauI CACGAG 1 cut(s) 1695
BbsI GAAGAC 5 cut(s) 201, 757, 1809, 2433, 2499
Bbv12I GWGCWC 3 cut(s) 232, 573, 2618
BbvCI CCTCAGC 1 cut(s) 1391
BbvI GCAGC 6 cut(s) 586, 745, 1230, 1378, 2386, 2488
BccI CCATC 6 cut(s) 428, 841, 910, 1740, 1916, 2008
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 5 cut(s) 139, 939, 1038, 1060, 1937
BciVI GTATCC 1 cut(s) 1056
BclI TGATCA 1 cut(s) 1318
BcoDI GTCTC 5 cut(s) 818, 1662, 1784, 2307, 2407
BfaI CTAG 1 cut(s) 1674
BfmI CTRYAG 5 cut(s) 558, 1152, 1236, 1483, 2435
BfoI RGCGCY 1 cut(s) 1561
BfuAI ACCTGC 3 cut(s) 774, 1058, 1476
BfuI GTATCC 1 cut(s) 1056
BglI GCCNNNNNGGC 1 cut(s) 1727
BglII AGATCT 2 cut(s) 55, 529
BisI GCNGC 6 cut(s) 600, 759, 1244, 1367, 2375, 2502
BlpI GCTNAGC 1 cut(s) 779
BlsI GCNGC 6 cut(s) 601, 760, 1245, 1368, 2376, 2503
BmcAI AGTACT 1 cut(s) 885
Bme1390I CCNGG 5 cut(s) 139, 939, 1038, 1060, 1937
Bme18I GGWCC 6 cut(s) 68, 935, 1119, 1216, 2209, 2233
BmeT110I CYCGRG 1 cut(s) 1661
BmgT120I GGNCC 9 cut(s) 68, 404, 935, 1119, 1216, 1728, 1729, 2209, 2233
BmiI GGNNCC 5 cut(s) 405, 673, 702, 1683, 1730
BmrFI CCNGG 5 cut(s) 139, 939, 1038, 1060, 1937
BmrI ACTGGG 4 cut(s) 287, 896, 1799, 2618
BmsI GCATC 5 cut(s) 229, 456, 867, 1101, 1147
BmuI ACTGGG 4 cut(s) 287, 896, 1799, 2618
BoxI GACNNNNGTC 2 cut(s) 66, 1796
BpiI GAAGAC 5 cut(s) 201, 757, 1809, 2433, 2499
BplI GAGNNNNNCTC 2 cut(s) 2404, 2436
BpmI CTGGAG 2 cut(s) 1982, 2219
Bpu10I CCTNAGC 2 cut(s) 1391, 2028
Bpu1102I GCTNAGC 1 cut(s) 779
BpuEI CTTGAG 7 cut(s) 143, 595, 746, 1295, 1621, 2258, 2288
BsaBI GATNNNNATC 1 cut(s) 1637
BsaHI GRCGYC 1 cut(s) 2069
BsaJI CCNNGG 7 cut(s) 138, 629, 901, 1036, 2253, 2286, 2346
Bsc4I CCNNNNNNNGG 3 cut(s) 491, 1517, 2095
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 8 cut(s) 293, 629, 759, 891, 1621, 1805, 2212, 2624
Bse3DI GCAATG 2 cut(s) 1376, 2022
Bse8I GATNNNNATC 1 cut(s) 1637
BseBI CCWGG 5 cut(s) 139, 939, 1038, 1060, 1937
BseDI CCNNGG 7 cut(s) 138, 629, 901, 1036, 2253, 2286, 2346
BseGI GGATG 6 cut(s) 10, 1732, 1800, 1846, 2000, 2263
BseJI GATNNNNATC 1 cut(s) 1637
BseLI CCNNNNNNNGG 3 cut(s) 491, 1517, 2095
BseMI GCAATG 2 cut(s) 1376, 2022
BseMII CTCAG 6 cut(s) 813, 1382, 2042, 2220, 2318, 2517
BseNI ACTGG 8 cut(s) 293, 629, 759, 891, 1621, 1805, 2212, 2624
BseRI GAGGAG 2 cut(s) 1674, 2528
BseSI GKGCMC 3 cut(s) 1399, 1732, 2618
BseXI GCAGC 6 cut(s) 586, 745, 1230, 1378, 2386, 2488
BseYI CCCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 1613
Bsh1236I CGCG 1 cut(s) 770
BshFI GGCC 9 cut(s) 133, 406, 628, 820, 839, 1058, 1721, 1730, 2478
BsiHKAI GWGCWC 3 cut(s) 232, 573, 2618
BsiHKCI CYCGRG 1 cut(s) 1661
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 3 cut(s) 491, 1517, 2095
BsmAI GTCTC 5 cut(s) 818, 1662, 1784, 2307, 2407
BsmFI GGGAC 1 cut(s) 103
BsmI GAATGC 3 cut(s) 333, 386, 761
BsnI GGCC 9 cut(s) 133, 406, 628, 820, 839, 1058, 1721, 1730, 2478
BsoBI CYCGRG 1 cut(s) 1661
Bsp120I GGGCCC 1 cut(s) 1728
Bsp1286I GDGCHC 7 cut(s) 37, 232, 573, 1281, 1399, 1732, 2618
Bsp1407I TGTACA 1 cut(s) 1469
Bsp1720I GCTNAGC 1 cut(s) 779
Bsp19I CCATGG 3 cut(s) 629, 901, 2253
BspACI CCGC 5 cut(s) 217, 1862, 1895, 2207, 2312
BspANI GGCC 9 cut(s) 133, 406, 628, 820, 839, 1058, 1721, 1730, 2478
BspCNI CTCAG 6 cut(s) 814, 1383, 2041, 2221, 2317, 2518
BspFNI CGCG 1 cut(s) 770
BspLI GGNNCC 5 cut(s) 405, 673, 702, 1683, 1730
BspMAI CTGCAG 2 cut(s) 1240, 1487
BspMI ACCTGC 3 cut(s) 774, 1058, 1476
BspPI GGATC 3 cut(s) 176, 1392, 2323
BspQI GCTCTTC 1 cut(s) 949
BsrBI CCGCTC 1 cut(s) 1862
BsrDI GCAATG 2 cut(s) 1376, 2022
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 1469
BsrI ACTGG 8 cut(s) 293, 629, 759, 891, 1621, 1805, 2212, 2624
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 7 cut(s) 138, 629, 901, 1036, 2253, 2286, 2346
BssNI GRCGYC 1 cut(s) 2069
BssSI CACGAG 1 cut(s) 1695
BssT1I CCWWGG 4 cut(s) 629, 901, 2253, 2286
Bst2BI CACGAG 1 cut(s) 1695
Bst2UI CCWGG 5 cut(s) 139, 939, 1038, 1060, 1937
Bst6I CTCTTC 4 cut(s) 264, 949, 1782, 2381
BstACI GRCGYC 1 cut(s) 2069
BstAUI TGTACA 1 cut(s) 1469
BstC8I GCNNGC 5 cut(s) 33, 983, 1723, 2310, 2538
BstDSI CCRYGG 4 cut(s) 629, 901, 2253, 2346
BstEII GGTNACC 2 cut(s) 142, 167
BstF5I GGATG 6 cut(s) 10, 1732, 1800, 1846, 2000, 2263
BstFNI CGCG 1 cut(s) 770
BstH2I RGCGCY 1 cut(s) 1561
BstHHI GCGC 2 cut(s) 599, 1560
BstMAI GTCTC 5 cut(s) 818, 1662, 1784, 2307, 2407
BstMWI GCNNNNNNNGC 7 cut(s) 403, 767, 1064, 1249, 1727, 2077, 2342
BstNI CCWGG 5 cut(s) 139, 939, 1038, 1060, 1937
BstNSI RCATGY 1 cut(s) 2122
BstPAI GACNNNNGTC 2 cut(s) 66, 1796
BstPI GGTNACC 2 cut(s) 142, 167
BstSCI CCNGG 5 cut(s) 137, 937, 1036, 1058, 1935
BstSFI CTRYAG 5 cut(s) 558, 1152, 1236, 1483, 2435
BstSLI GKGCMC 3 cut(s) 1399, 1732, 2618
BstUI CGCG 1 cut(s) 770
BstV1I GCAGC 6 cut(s) 586, 745, 1230, 1378, 2386, 2488
BstV2I GAAGAC 5 cut(s) 201, 757, 1809, 2433, 2499
BstX2I RGATCY 4 cut(s) 55, 529, 1384, 2315
BstXI CCANNNNNNTGG 4 cut(s) 434, 886, 908, 932
BstYI RGATCY 4 cut(s) 55, 529, 1384, 2315
BsuI GTATCC 1 cut(s) 1056
BsuRI GGCC 9 cut(s) 133, 406, 628, 820, 839, 1058, 1721, 1730, 2478
BtgI CCRYGG 4 cut(s) 629, 901, 2253, 2346
BtgZI GCGATG 1 cut(s) 1124
BtsCI GGATG 6 cut(s) 10, 1732, 1800, 1846, 2000, 2263
BtsI GCAGTG 2 cut(s) 147, 1245
BtsIMutI CAGTG 6 cut(s) 120, 147, 1245, 1472, 1533, 1812
BveI ACCTGC 3 cut(s) 774, 1058, 1476
Cac8I GCNNGC 5 cut(s) 33, 983, 1723, 2310, 2538
CaiI CAGNNNCTG 3 cut(s) 1942, 2443, 2581
CfoI GCGC 2 cut(s) 599, 1560
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 9 cut(s) 68, 404, 935, 1119, 1216, 1728, 1729, 2209, 2233
CseI GACGC 1 cut(s) 2077
Csp6I GTAC 7 cut(s) 884, 898, 1009, 1470, 1480, 1506, 2627
CviQI GTAC 7 cut(s) 884, 898, 1009, 1470, 1480, 1506, 2627
DraIII CACNNNGTG 1 cut(s) 1580
EaeI YGGCCR 2 cut(s) 626, 1056
Eam1104I CTCTTC 4 cut(s) 264, 949, 1782, 2381
EarI CTCTTC 4 cut(s) 264, 949, 1782, 2381
EciI GGCGGA 1 cut(s) 2222
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 4 cut(s) 629, 901, 2253, 2286
Eco147I AGGCCT 2 cut(s) 133, 820
Eco24I GRGCYC 4 cut(s) 37, 573, 1281, 1732
Eco32I GATATC 1 cut(s) 2359
Eco47I GGWCC 6 cut(s) 68, 935, 1119, 1216, 2209, 2233
Eco53kI GAGCTC 1 cut(s) 571
Eco57I CTGAAG 2 cut(s) 353, 2465
Eco88I CYCGRG 1 cut(s) 1661
Eco91I GGTNACC 2 cut(s) 142, 167
EcoICRI GAGCTC 1 cut(s) 571
EcoO109I RGGNCCY 4 cut(s) 404, 1216, 1728, 2233
EcoO65I GGTNACC 2 cut(s) 142, 167
EcoRI GAATTC 4 cut(s) 160, 509, 691, 1031
EcoRII CCWGG 5 cut(s) 137, 937, 1036, 1058, 1935
EcoRV GATATC 1 cut(s) 2359
EcoT14I CCWWGG 4 cut(s) 629, 901, 2253, 2286
EcoT38I GRGCYC 4 cut(s) 37, 573, 1281, 1732
ErhI CCWWGG 4 cut(s) 629, 901, 2253, 2286
FalI AAGNNNNNCTT 3 cut(s) 35, 2438, 2470
FaqI GGGAC 1 cut(s) 103
FauI CCCGC 1 cut(s) 2305
FbaI TGATCA 1 cut(s) 1318
FblI GTMKAC 2 cut(s) 621, 2037
Fnu4HI GCNGC 6 cut(s) 600, 759, 1244, 1367, 2375, 2502
FokI GGATG 6 cut(s) 17, 1719, 1787, 1853, 1987, 2270
FriOI GRGCYC 4 cut(s) 37, 573, 1281, 1732
Fsp4HI GCNGC 6 cut(s) 600, 759, 1244, 1367, 2375, 2502
FspBI CTAG 1 cut(s) 1674
GlaI GCGC 2 cut(s) 598, 1559
GluI GCNGC 6 cut(s) 600, 759, 1244, 1367, 2375, 2502
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 2 cut(s) 1982, 2219
HaeII RGCGCY 1 cut(s) 1561
HaeIII GGCC 9 cut(s) 133, 406, 628, 820, 839, 1058, 1721, 1730, 2478
HapII CCGG 1 cut(s) 485
HgaI GACGC 1 cut(s) 2077
HhaI GCGC 2 cut(s) 599, 1560
Hin1I GRCGYC 1 cut(s) 2069
Hin6I GCGC 2 cut(s) 597, 1558
HinP1I GCGC 2 cut(s) 597, 1558
HindIII AAGCTT 3 cut(s) 722, 1923, 2483
HinfI GANTC 7 cut(s) 177, 1084, 1264, 2300, 2351, 2450, 2588
HpaII CCGG 1 cut(s) 485
HphI GGTGA 9 cut(s) 271, 290, 416, 547, 692, 923, 1838, 1938, 2117
Hpy166II GTNNAC 9 cut(s) 262, 622, 898, 1470, 1651, 1754, 1846, 2038, 2616
Hpy8I GTNNAC 9 cut(s) 262, 622, 898, 1470, 1651, 1754, 1846, 2038, 2616
Hpy99I CGWCG 2 cut(s) 1592, 2071
HpyAV CCTTC 7 cut(s) 250, 329, 532, 807, 1549, 2014, 2440
HpyCH4IV ACGT 4 cut(s) 248, 972, 1447, 1747
HpyF10VI GCNNNNNNNGC 7 cut(s) 403, 767, 1064, 1249, 1727, 2077, 2342
HpySE526I ACGT 4 cut(s) 248, 972, 1447, 1747
Hsp92I GRCGYC 1 cut(s) 2069
HspAI GCGC 2 cut(s) 597, 1558
Ksp22I TGATCA 1 cut(s) 1318
LguI GCTCTTC 1 cut(s) 949
LmnI GCTCC 6 cut(s) 29, 671, 1687, 1703, 1873, 2077
Lsp1109I GCAGC 6 cut(s) 586, 745, 1230, 1378, 2386, 2488
LweI GCATC 5 cut(s) 229, 456, 867, 1101, 1147
MaeI CTAG 1 cut(s) 1674
MaeII ACGT 4 cut(s) 248, 972, 1447, 1747
MaeIII GTNAC 8 cut(s) 87, 142, 167, 278, 1572, 1697, 1944, 2176
MbiI CCGCTC 1 cut(s) 1862
MflI RGATCY 4 cut(s) 55, 529, 1384, 2315
MhlI GDGCHC 7 cut(s) 37, 232, 573, 1281, 1399, 1732, 2618
MlsI TGGCCA 2 cut(s) 628, 1058
MluNI TGGCCA 2 cut(s) 628, 1058
MlyI GAGTC 3 cut(s) 1093, 1273, 2309
MmeI TCCRAC 6 cut(s) 277, 825, 972, 1359, 1818, 2538
Mox20I TGGCCA 2 cut(s) 628, 1058
MroXI GAANNNNTTC 2 cut(s) 513, 996
MscI TGGCCA 2 cut(s) 628, 1058
MseI TTAA 3 cut(s) 410, 1635, 2136
MslI CAYNNNNRTG 4 cut(s) 237, 251, 432, 1805
Msp20I TGGCCA 2 cut(s) 628, 1058
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 5 cut(s) 139, 939, 1038, 1060, 1937
Mva1269I GAATGC 3 cut(s) 333, 386, 761
MvaI CCWGG 5 cut(s) 139, 939, 1038, 1060, 1937
MvnI CGCG 1 cut(s) 770
MwoI GCNNNNNNNGC 7 cut(s) 403, 767, 1064, 1249, 1727, 2077, 2342
NcoI CCATGG 3 cut(s) 629, 901, 2253
NlaIV GGNNCC 5 cut(s) 405, 673, 702, 1683, 1730
NmuCI GTSAC 4 cut(s) 278, 1572, 1697, 1944
NspI RCATGY 1 cut(s) 2122
PaqCI CACCTGC 1 cut(s) 1476
PceI AGGCCT 2 cut(s) 133, 820
PciSI GCTCTTC 1 cut(s) 949
PcsI WCGNNNNNNNCGW 2 cut(s) 1453, 1693
PctI GAATGC 3 cut(s) 333, 386, 761
PdmI GAANNNNTTC 2 cut(s) 513, 996
PfeI GAWTC 4 cut(s) 177, 2351, 2450, 2588
PflMI CCANNNNNTGG 1 cut(s) 2095
PkrI GCNGC 6 cut(s) 601, 760, 1245, 1368, 2376, 2503
PleI GAGTC 3 cut(s) 1092, 1272, 2308
PpsI GAGTC 3 cut(s) 1092, 1272, 2308
PpuMI RGGWCCY 2 cut(s) 1216, 2233
PshAI GACNNNNGTC 2 cut(s) 66, 1796
PsiI TTATAA 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 573
Psp5II RGGWCCY 2 cut(s) 1216, 2233
Psp6I CCWGG 5 cut(s) 137, 937, 1036, 1058, 1935
PspEI GGTNACC 2 cut(s) 142, 167
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 5 cut(s) 137, 937, 1036, 1058, 1935
PspN4I GGNNCC 5 cut(s) 405, 673, 702, 1683, 1730
PspOMI GGGCCC 1 cut(s) 1728
PspPI GGNCC 9 cut(s) 68, 404, 935, 1119, 1216, 1728, 1729, 2209, 2233
PspPPI RGGWCCY 2 cut(s) 1216, 2233
PstI CTGCAG 2 cut(s) 1240, 1487
PstNI CAGNNNCTG 3 cut(s) 1942, 2443, 2581
PsuI RGATCY 4 cut(s) 55, 529, 1384, 2315
RsaI GTAC 7 cut(s) 885, 899, 1010, 1471, 1481, 1507, 2628
RsaNI GTAC 7 cut(s) 884, 898, 1009, 1470, 1480, 1506, 2627
RseI CAYNNNNRTG 4 cut(s) 237, 251, 432, 1805
SacI GAGCTC 1 cut(s) 573
SapI GCTCTTC 1 cut(s) 949
SaqAI TTAA 3 cut(s) 410, 1635, 2136
SatI GCNGC 6 cut(s) 600, 759, 1244, 1367, 2375, 2502
Sau96I GGNCC 9 cut(s) 68, 404, 935, 1119, 1216, 1728, 1729, 2209, 2233
ScaI AGTACT 1 cut(s) 885
SchI GAGTC 3 cut(s) 1093, 1273, 2309
ScrFI CCNGG 5 cut(s) 139, 939, 1038, 1060, 1937
SduI GDGCHC 7 cut(s) 37, 232, 573, 1281, 1399, 1732, 2618
SfaNI GCATC 5 cut(s) 229, 456, 867, 1101, 1147
SfcI CTRYAG 5 cut(s) 558, 1152, 1236, 1483, 2435
SfiI GGCCNNNNNGGCC 1 cut(s) 1727
SinI GGWCC 6 cut(s) 68, 935, 1119, 1216, 2209, 2233
SmiMI CAYNNNNRTG 4 cut(s) 237, 251, 432, 1805
SmlI CTYRAG 8 cut(s) 9, 122, 574, 725, 1274, 1600, 2237, 2267
SmoI CTYRAG 8 cut(s) 9, 122, 574, 725, 1274, 1600, 2237, 2267
SseBI AGGCCT 2 cut(s) 133, 820
SsiI CCGC 5 cut(s) 217, 1862, 1895, 2207, 2312
SspI AATATT 1 cut(s) 995
SspMI CTAG 1 cut(s) 1674
SstI GAGCTC 1 cut(s) 573
StuI AGGCCT 2 cut(s) 133, 820
StyD4I CCNGG 5 cut(s) 137, 937, 1036, 1058, 1935
StyI CCWWGG 4 cut(s) 629, 901, 2253, 2286
TaiI ACGT 4 cut(s) 251, 975, 1450, 1750
TaqI TCGA 5 cut(s) 101, 180, 1687, 2066, 2586
TatI WGTACW 5 cut(s) 883, 1008, 1469, 1505, 2626
TfiI GAWTC 4 cut(s) 177, 2351, 2450, 2588
Tru1I TTAA 3 cut(s) 410, 1635, 2136
Tru9I TTAA 3 cut(s) 410, 1635, 2136
TscAI CASTG 6 cut(s) 120, 154, 1245, 1472, 1533, 1812
TseFI GTSAC 4 cut(s) 278, 1572, 1697, 1944
TseI GCWGC 6 cut(s) 599, 758, 1243, 1366, 2374, 2501
Tsp45I GTSAC 4 cut(s) 278, 1572, 1697, 1944
TspDTI ATGAA 8 cut(s) 269, 282, 311, 502, 1758, 1905, 2049, 2484
TspGWI ACGGA 4 cut(s) 345, 684, 1716, 2363
TspRI CASTG 6 cut(s) 120, 154, 1245, 1472, 1533, 1812
Van91I CCANNNNNTGG 1 cut(s) 2095
VneI GTGCAC 1 cut(s) 2614
VpaK11BI GGWCC 6 cut(s) 68, 935, 1119, 1216, 2209, 2233
XapI RAATTY 5 cut(s) 160, 509, 691, 1031, 1608
XbaI TCTAGA 1 cut(s) 1673
XceI RCATGY 1 cut(s) 2122
XcmI CCANNNNNNNNNTGG 1 cut(s) 974
XmiI GTMKAC 2 cut(s) 621, 2037
XmnI GAANNNNTTC 2 cut(s) 513, 996
XspI CTAG 1 cut(s) 1674
ZrmI AGTACT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.