Rorug05G0221700

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000253
Physical Location & Seq
Reverse (-)
22877873 .. 22982277
104405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0221700.1

Sequence Viewer

Length: 1731 bp
ATGTCCAGACTCCTCCTCCTTTTCTCCATCCTAATCCTCTGCGGCCACGTCCACGGCCGCTACAACCTCCCCGACCAATCCGATCTAATCTCCGATGGTGTCCGCCAATACGGCACCTCCTCATACTCCTACTCACACAACTTTCTCACTCTCCACCGCCCCTCCTTGAACGCCGACGACTCCACCTGCGACGAGACGTACGGCTTCTTGCCCTGCACCACCACCATCCTCGGTAACCTCTTCCTCATCATCGTCTATGGCGGCCTCATGTACCTGGCCGCCACCTACCTCACCAATGGCAGCGAGCTCCTCCTTGAGATTCTCGGCCCCGGAATCATCGGTGGCCTCTTCCTCCCCATTCTCGGCGCTCTTCCCGACGCCATGCTCATTCTCGTATCCGGACTTTCTGGGAGTACAGAAACAGCTCAAGATCAGGTTTCTGTTGGAATGGGCTTGCTAGCTGGTTCGACTGTAATGCTCATAACTGTAGTATGGGGTTCATGTGTTTTTATTGGCAAGTGCGATATTGAGAATAATATTGCCGTAGATAACAAAGATACAAAAAAGTTGAGCTTAACAGGTTCTGGTGTCAGTACTGATATCTGGACTAGCTATTCTGCAAGGATTATGGCTGTCTCTGTTATCCCATTCCTTATTGTTCAAATACCACAGGTTCTCAATTCGTACTCAGGAAGACGCATAGCAGTTTTGATTGCGCTCATTGTCTCTGTCACGCTATTTGTTTCATATTGCATTTATCAGGTGTGTCAACCATGGGTCCAGAAGAGACATATTGCTTATGCAAAACATAAGCATGTTATATCAGGAATCTTACAACATCTAAAGATGCGTGCATTGGGATGGCTTCTTGACGATGATGGAGAACCCAATAAAGAAGTTATAGATAAGTTGTTTTGTACAATTGATCAGGACAATGATGGATATCTTTCAGCTACTGAATTAAGAGCACTTATAATAGGAGTCCGGTTTGATCAAATAGAGTTGAATAAGGATGATGCTGTGGAAAAACTGATGCAGGAATTTGATACTTCTCATGATTCTCGCATTGATAGGAACGAATTCTTTATTGGTGTCTCAAAATGGCTTAATGTTGCAAAGCGTGTAGCAAATTCCAAGTCTCCCTCTGATCGTAAATTTTTAACTGACTTCCACTCGAGGACAAAGCAAGAGCATGATCTTTTAGGGGCGGGTGATCAAAGTGAGGAGGCCATTGAGGAAAGGAAAAATATCAAGTTGGCCTTCCTCAAAGCGGTAGGAATGCTGTTGGTAGGAACTCTTATTGCGGCTGTAGTGGCAGAACCTTTGGTCGACGTCGTTGATAATTTCTCAGATGCCACAAGCATTCCAAATTTCTTCATCTCATTCATTATACTACCTTTGTTTACTGCTAGTGAGGGTGTGTCTGCAATAACATTCGCTAGCCGAAAAAAGATACGAACTGCCTCTTTGACATTTTCTCAGTTGTATGGCTCAGTAACCATGAAGAATGTGCTTTGCCTATCTGTATTTTTGGCCCTGGTTTACATCAGGGAATTAACATGGGATTTCTCAGCAGAAGTTCTTGTCATTCTTATTGTCTGCATAGTGATGGGTGTTTTTGGCAGTTTCCGCACCACCTTCCCTCTCTGGACATCATCAATTGCTTTCATACTCTATCCGTTCTCGGTGGCACTGATTTATGTTCTGGATTTCGTTTTTGGTTGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

576

Amino Acids

63.6

Weight (kDa)

5.51

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 80 - 254 1e-08 Sodium/calcium exchanger protein
EF-hand_7 PF13499 299 - 363 4.7e-12 EF-hand domain pair
Na_Ca_ex PF01699 424 - 567 5.8e-12 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 974
AarI CACCTGC 1 cut(s) 194
AatII GACGTC 1 cut(s) 1335
Acc36I ACCTGC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 1329
AccIII TCCGGA 1 cut(s) 398
AcoI YGGCCR 3 cut(s) 43, 55, 276
AcsI RAATTY 5 cut(s) 1040, 1079, 1129, 1154, 1369
AcyI GRCGYC 2 cut(s) 378, 1332
AfaI GTAC 6 cut(s) 200, 272, 415, 595, 686, 919
AfiI CCNNNNNNNGG 2 cut(s) 362, 1270
AgsI TTSAA 3 cut(s) 169, 662, 1006
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 273, 1536
AjuI GAANNNNNNNTTGG 2 cut(s) 1071, 1103
AluBI AGCT 6 cut(s) 307, 425, 461, 573, 612, 953
AluI AGCT 6 cut(s) 307, 425, 461, 573, 612, 953
Alw21I GWGCWC 2 cut(s) 309, 970
Alw26I GTCTC 6 cut(s) 188, 640, 730, 781, 1099, 1143
AlwNI CAGNNNCTG 2 cut(s) 584, 956
Ama87I CYCGRG 1 cut(s) 1174
Aor13HI TCCGGA 1 cut(s) 398
AoxI GGCC 9 cut(s) 43, 55, 262, 276, 325, 343, 1227, 1257, 1533
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 5 cut(s) 1040, 1079, 1129, 1154, 1369
ArsI GACNNNNNNTTYG 2 cut(s) 1121, 1153
Asp700I GAANNNNTTC 1 cut(s) 1079
AspLEI GCGC 2 cut(s) 368, 718
AspS9I GGNCC 3 cut(s) 326, 778, 1534
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 2 cut(s) 283, 1223
AsuNHI GCTAGC 2 cut(s) 457, 1439
AvaI CYCGRG 1 cut(s) 1174
AvaII GGWCC 1 cut(s) 778
BanI GGYRCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 700
Bbv12I GWGCWC 2 cut(s) 309, 970
BbvI GCAGC 1 cut(s) 312
BccI CCATC 7 cut(s) 35, 89, 233, 855, 872, 932, 1603
BceAI ACGGC 4 cut(s) 70, 127, 217, 527
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BciT130I CCWGG 2 cut(s) 275, 1538
BciVI GTATCC 1 cut(s) 406
BclI TGATCA 3 cut(s) 925, 991, 1213
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 6 cut(s) 188, 640, 730, 781, 1099, 1143
BfaI CTAG 4 cut(s) 458, 609, 1410, 1440
BfmI CTRYAG 2 cut(s) 486, 1308
BfoI RGCGCY 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 194
BfuI GTATCC 1 cut(s) 406
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 6 cut(s) 43, 58, 262, 279, 301, 1305
BlsI GCNGC 6 cut(s) 44, 59, 263, 280, 302, 1306
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 3 cut(s) 275, 330, 1538
Bme18I GGWCC 1 cut(s) 778
BmeT110I CYCGRG 1 cut(s) 1174
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 3 cut(s) 326, 778, 1534
BmiI GGNNCC 3 cut(s) 115, 328, 779
BmrFI CCNGG 3 cut(s) 275, 330, 1538
BmsI GCATC 4 cut(s) 837, 1006, 1023, 1342
BmtI GCTAGC 2 cut(s) 461, 1443
BpiI GAAGAC 1 cut(s) 700
BpuEI CTTGAG 2 cut(s) 335, 411
BpuMI CCSGG 1 cut(s) 330
BsaBI GATNNNNATC 1 cut(s) 942
BsaHI GRCGYC 2 cut(s) 378, 1332
BsaJI CCNNGG 5 cut(s) 52, 229, 328, 773, 1536
BsaWI WCCGGW 2 cut(s) 398, 984
BsaXI ACNNNNNCTCC 5 cut(s) 30, 101, 131, 146, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 1270
Bse8I GATNNNNATC 1 cut(s) 942
BseAI TCCGGA 1 cut(s) 398
BseBI CCWGG 2 cut(s) 275, 1538
BseDI CCNNGG 5 cut(s) 52, 229, 328, 773, 1536
BseGI GGATG 4 cut(s) 27, 225, 866, 1018
BseJI GATNNNNATC 1 cut(s) 942
BseLI CCNNNNNNNGG 2 cut(s) 362, 1270
BseMII CTCAG 5 cut(s) 702, 1362, 1493, 1506, 1584
BseRI GAGGAG 4 cut(s) 5, 109, 299, 1238
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 199
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 9 cut(s) 45, 57, 264, 278, 327, 345, 1229, 1259, 1535
BshNI GGYRCC 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 2 cut(s) 309, 970
BsiHKCI CYCGRG 1 cut(s) 1174
BsiSI CCGG 3 cut(s) 330, 399, 985
BsiWI CGTACG 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 362, 1270
BsmAI GTCTC 6 cut(s) 188, 640, 730, 781, 1099, 1143
BsmBI CGTCTC 1 cut(s) 188
BsmI GAATGC 2 cut(s) 1284, 1362
BsnI GGCC 9 cut(s) 45, 57, 264, 278, 327, 345, 1229, 1259, 1535
BsoBI CYCGRG 1 cut(s) 1174
Bsp1286I GDGCHC 2 cut(s) 309, 970
Bsp13I TCCGGA 1 cut(s) 398
Bsp1407I TGTACA 1 cut(s) 917
Bsp143I GATC 7 cut(s) 82, 430, 925, 991, 1147, 1195, 1213
Bsp19I CCATGG 1 cut(s) 773
BspANI GGCC 9 cut(s) 45, 57, 264, 278, 327, 345, 1229, 1259, 1535
BspCNI CTCAG 5 cut(s) 701, 1361, 1492, 1505, 1583
BspEI TCCGGA 1 cut(s) 398
BspHI TCATGA 1 cut(s) 1054
BspLI GGNNCC 3 cut(s) 115, 328, 779
BspMI ACCTGC 1 cut(s) 194
BspOI GCTAGC 2 cut(s) 461, 1443
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 917
BssECI CCNNGG 5 cut(s) 52, 229, 328, 773, 1536
BssMI GATC 7 cut(s) 82, 430, 925, 991, 1147, 1195, 1213
BssNI GRCGYC 2 cut(s) 378, 1332
BssT1I CCWWGG 1 cut(s) 773
Bst2UI CCWGG 2 cut(s) 275, 1538
Bst4CI ACNGT 2 cut(s) 472, 487
Bst6I CTCTTC 4 cut(s) 245, 353, 375, 779
BstACI GRCGYC 2 cut(s) 378, 1332
BstAUI TGTACA 1 cut(s) 917
BstC8I GCNNGC 5 cut(s) 305, 455, 459, 852, 1441
BstDEI CTNAG 5 cut(s) 688, 1348, 1479, 1492, 1570
BstDSI CCRYGG 2 cut(s) 52, 773
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 4 cut(s) 27, 225, 866, 1018
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 2 cut(s) 368, 718
BstKTI GATC 7 cut(s) 85, 433, 928, 994, 1150, 1198, 1216
BstMAI GTCTC 6 cut(s) 188, 640, 730, 781, 1099, 1143
BstMBI GATC 7 cut(s) 82, 430, 925, 991, 1147, 1195, 1213
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 111, 1313, 1629
BstNI CCWGG 2 cut(s) 275, 1538
BstNSI RCATGY 1 cut(s) 818
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 3 cut(s) 273, 328, 1536
BstSFI CTRYAG 2 cut(s) 486, 1308
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 700
BstZI CGGCCG 1 cut(s) 55
BsuI GTATCC 1 cut(s) 406
BsuRI GGCC 9 cut(s) 45, 57, 264, 278, 327, 345, 1229, 1259, 1535
BtgI CCRYGG 2 cut(s) 52, 773
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 4 cut(s) 27, 225, 866, 1018
BtsIMutI CAGTG 1 cut(s) 1691
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 5 cut(s) 305, 455, 459, 852, 1441
CaiI CAGNNNCTG 2 cut(s) 584, 956
CciI TCATGA 1 cut(s) 1054
CfoI GCGC 2 cut(s) 368, 718
Cfr13I GGNCC 3 cut(s) 326, 778, 1534
CseI GACGC 2 cut(s) 386, 705
Csp6I GTAC 6 cut(s) 199, 271, 414, 594, 685, 918
CviAII CATG 9 cut(s) 268, 382, 501, 774, 815, 1055, 1193, 1501, 1560
CviQI GTAC 6 cut(s) 199, 271, 414, 594, 685, 918
DdeI CTNAG 5 cut(s) 688, 1348, 1479, 1492, 1570
DpnI GATC 7 cut(s) 84, 432, 927, 993, 1149, 1197, 1215
DpnII GATC 7 cut(s) 82, 430, 925, 991, 1147, 1195, 1213
EaeI YGGCCR 3 cut(s) 43, 55, 276
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 4 cut(s) 245, 353, 375, 779
EarI CTCTTC 4 cut(s) 245, 353, 375, 779
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 307
EclXI CGGCCG 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 773
Eco24I GRGCYC 1 cut(s) 309
Eco32I GATATC 2 cut(s) 601, 944
Eco47I GGWCC 1 cut(s) 778
Eco52I CGGCCG 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 1174
Eco91I GGTNACC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 307
EcoO65I GGTNACC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 1079
EcoRII CCWGG 2 cut(s) 273, 1536
EcoRV GATATC 2 cut(s) 601, 944
EcoT14I CCWWGG 1 cut(s) 773
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 773
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 9 cut(s) 271, 385, 504, 777, 818, 1058, 1196, 1504, 1563
FalI AAGNNNNNCTT 4 cut(s) 557, 589, 1244, 1276
FatI CATG 9 cut(s) 267, 381, 500, 773, 814, 1054, 1192, 1500, 1559
FauI CCCGC 1 cut(s) 1201
FbaI TGATCA 3 cut(s) 925, 991, 1213
FblI GTMKAC 1 cut(s) 1329
Fnu4HI GCNGC 6 cut(s) 43, 58, 262, 279, 301, 1305
FokI GGATG 4 cut(s) 14, 212, 873, 1025
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 6 cut(s) 43, 58, 262, 279, 301, 1305
FspBI CTAG 4 cut(s) 458, 609, 1410, 1440
GlaI GCGC 2 cut(s) 367, 717
GluI GCNGC 6 cut(s) 43, 58, 262, 279, 301, 1305
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 9 cut(s) 45, 57, 264, 278, 327, 345, 1229, 1259, 1535
HapII CCGG 3 cut(s) 330, 399, 985
HgaI GACGC 2 cut(s) 386, 705
HhaI GCGC 2 cut(s) 368, 718
Hin1I GRCGYC 2 cut(s) 378, 1332
Hin1II CATG 9 cut(s) 271, 385, 504, 777, 818, 1058, 1196, 1504, 1563
Hin6I GCGC 2 cut(s) 366, 716
HinP1I GCGC 2 cut(s) 366, 716
HincII GTYRAC 2 cut(s) 770, 1330
HindII GTYRAC 2 cut(s) 770, 1330
HinfI GANTC 7 cut(s) 9, 179, 319, 333, 828, 981, 1058
HpaII CCGG 3 cut(s) 330, 399, 985
HphI GGTGA 2 cut(s) 283, 1223
Hpy166II GTNNAC 5 cut(s) 52, 770, 1330, 1404, 1543
Hpy188I TCNGA 4 cut(s) 82, 94, 1147, 1351
Hpy8I GTNNAC 5 cut(s) 52, 770, 1330, 1404, 1543
Hpy99I CGWCG 5 cut(s) 179, 194, 380, 1334, 1337
HpyAV CCTTC 2 cut(s) 1270, 1648
HpyCH4III ACNGT 2 cut(s) 472, 487
HpyCH4IV ACGT 3 cut(s) 48, 197, 1332
HpyCH4V TGCA 9 cut(s) 216, 620, 753, 803, 854, 1036, 1115, 1427, 1602
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 1313, 1629
HpyF3I CTNAG 5 cut(s) 688, 1348, 1479, 1492, 1570
HpySE526I ACGT 3 cut(s) 48, 197, 1332
Hsp92I GRCGYC 2 cut(s) 378, 1332
Hsp92II CATG 9 cut(s) 271, 385, 504, 777, 818, 1058, 1196, 1504, 1563
HspAI GCGC 2 cut(s) 366, 716
Kpn2I TCCGGA 1 cut(s) 398
Ksp22I TGATCA 3 cut(s) 925, 991, 1213
Kzo9I GATC 7 cut(s) 82, 430, 925, 991, 1147, 1195, 1213
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 4 cut(s) 837, 1006, 1023, 1342
MaeI CTAG 4 cut(s) 458, 609, 1410, 1440
MaeII ACGT 3 cut(s) 48, 197, 1332
MaeIII GTNAC 3 cut(s) 233, 730, 1495
MalI GATC 7 cut(s) 84, 432, 927, 993, 1149, 1197, 1215
MboI GATC 7 cut(s) 82, 430, 925, 991, 1147, 1195, 1213
MboII GAAGA 7 cut(s) 232, 340, 362, 705, 796, 1366, 1516
MfeI CAATTG 2 cut(s) 921, 1659
MhlI GDGCHC 2 cut(s) 309, 970
MlyI GAGTC 3 cut(s) 3, 173, 990
MmeI TCCRAC 1 cut(s) 424
MroI TCCGGA 1 cut(s) 398
MroXI GAANNNNTTC 1 cut(s) 1079
MseI TTAA 5 cut(s) 575, 962, 1107, 1160, 1556
MslI CAYNNNNRTG 3 cut(s) 813, 859, 1607
MspI CCGG 3 cut(s) 330, 399, 985
MspR9I CCNGG 3 cut(s) 275, 330, 1538
MunI CAATTG 2 cut(s) 921, 1659
Mva1269I GAATGC 2 cut(s) 1284, 1362
MvaI CCWGG 2 cut(s) 275, 1538
MwoI GCNNNNNNNGC 3 cut(s) 111, 1313, 1629
NciI CCSGG 1 cut(s) 330
NcoI CCATGG 1 cut(s) 773
NdeII GATC 7 cut(s) 82, 430, 925, 991, 1147, 1195, 1213
NheI GCTAGC 2 cut(s) 457, 1439
NlaIII CATG 9 cut(s) 271, 385, 504, 777, 818, 1058, 1196, 1504, 1563
NlaIV GGNNCC 3 cut(s) 115, 328, 779
NmeAIII GCCGAG 2 cut(s) 303, 342
NmuCI GTSAC 1 cut(s) 730
NspI RCATGY 1 cut(s) 818
PaeR7I CTCGAG 1 cut(s) 1174
PagI TCATGA 1 cut(s) 1054
PaqCI CACCTGC 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 2 cut(s) 1284, 1362
PdmI GAANNNNTTC 1 cut(s) 1079
PfeI GAWTC 4 cut(s) 319, 333, 828, 1058
Pfl23II CGTACG 1 cut(s) 198
PkrI GCNGC 6 cut(s) 44, 59, 263, 280, 302, 1306
PleI GAGTC 3 cut(s) 3, 173, 989
PpsI GAGTC 3 cut(s) 3, 173, 989
PsiI TTATAA 1 cut(s) 974
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 273, 1536
PspEI GGTNACC 1 cut(s) 233
PspGI CCWGG 2 cut(s) 273, 1536
PspLI CGTACG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 115, 328, 779
PspPI GGNCC 3 cut(s) 326, 778, 1534
PspXI VCTCGAGB 1 cut(s) 1174
PstNI CAGNNNCTG 2 cut(s) 584, 956
RsaI GTAC 6 cut(s) 200, 272, 415, 595, 686, 919
RsaNI GTAC 6 cut(s) 199, 271, 414, 594, 685, 918
RseI CAYNNNNRTG 3 cut(s) 813, 859, 1607
SacI GAGCTC 1 cut(s) 309
SalI GTCGAC 1 cut(s) 1328
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 5 cut(s) 575, 962, 1107, 1160, 1556
SatI GCNGC 6 cut(s) 43, 58, 262, 279, 301, 1305
Sau3AI GATC 7 cut(s) 82, 430, 925, 991, 1147, 1195, 1213
Sau96I GGNCC 3 cut(s) 326, 778, 1534
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 3 cut(s) 3, 173, 990
ScrFI CCNGG 3 cut(s) 275, 330, 1538
SduI GDGCHC 2 cut(s) 309, 970
SfaNI GCATC 4 cut(s) 837, 1006, 1023, 1342
SfcI CTRYAG 2 cut(s) 486, 1308
Sfr274I CTCGAG 1 cut(s) 1174
SinI GGWCC 1 cut(s) 778
SlaI CTCGAG 1 cut(s) 1174
SmiMI CAYNNNNRTG 3 cut(s) 813, 859, 1607
SmlI CTYRAG 3 cut(s) 314, 426, 1174
SmoI CTYRAG 3 cut(s) 314, 426, 1174
SspI AATATT 1 cut(s) 538
SspMI CTAG 4 cut(s) 458, 609, 1410, 1440
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 273, 328, 1536
StyI CCWWGG 1 cut(s) 773
TaaI ACNGT 2 cut(s) 472, 487
TaiI ACGT 3 cut(s) 51, 200, 1335
TaqI TCGA 3 cut(s) 467, 1175, 1329
TatI WGTACW 3 cut(s) 413, 593, 917
TauI GCSGC 5 cut(s) 45, 60, 264, 281, 1307
TfiI GAWTC 4 cut(s) 319, 333, 828, 1058
Tru1I TTAA 5 cut(s) 575, 962, 1107, 1160, 1556
Tru9I TTAA 5 cut(s) 575, 962, 1107, 1160, 1556
TscAI CASTG 1 cut(s) 1698
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 6 cut(s) 489, 735, 1366, 1375, 1517, 1657
TspGWI ACGGA 1 cut(s) 1668
TspRI CASTG 1 cut(s) 1698
VpaK11BI GGWCC 1 cut(s) 778
XapI RAATTY 5 cut(s) 1040, 1079, 1129, 1154, 1369
XceI RCATGY 1 cut(s) 818
XhoI CTCGAG 1 cut(s) 1174
XmiI GTMKAC 1 cut(s) 1329
XmnI GAANNNNTTC 1 cut(s) 1079
XspI CTAG 4 cut(s) 458, 609, 1410, 1440
ZraI GACGTC 1 cut(s) 1333
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.