Rh5CG363000

Alcohol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000253
Physical Location & Seq
Forward (+)
43589754 .. 43590986
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG363000.1

Sequence Viewer

Length: 1155 bp
ATGGTCTTTCGGGATAACAAGTCTGTAATTTATCGTCCCCATGCTTTTCTTGAGACCAAGGGCTATTTTCTGTTAGACGATGAGAAACTATCAGACGAGAGGTTTGAGTTTCTTTTTGGCCTACGCTCTACATGCCTTCCTATGAGAGTAGATGGCCAGCTTATTTTGGAGTCGTATTATCCCAATAGATTTGCTCGTCAATTCGACTATGATCAGAGTGTTCCCTCAAACCGCCTCTCTTTTAGCGTGTCAAAGAGGAAGCAGTGTTTTGTTGAGGACTTAGCAAGAGCTCAGACTATTCTTTGCAGGAGGAGTACAACTGCTCGTTTTTATATCCCGAGATCAACACGTGAAGGGGAATGCACTTGGTGGTATTGCAAGTGGTGGTTGAAAGCTTTGAACAAACTTGCTAAAGTTTCTGCGGATTTGAGAAAGGAAGTTCAAATTTCATCTTTACCGAGGCAAGAAAGTCAGAATTCTCAAACGAGCATCGACAAGGTGGGGCCAGATGGTAATAACCGTTTTAGTAGGAAGCGCATTGGCCATGAGAAGGTGGCAACTTTTGAAGAGACAGTGTCCAAAGAGGCGAGTCTTCCCAAGATAGGAACTGACACTCAAGATGCACAAAAGGTACTCAAGAAGAAAACTAACAGTTTACATCCTTCTAATCCTTCAACAGTTGTTCCAAATGTCCAGCAAACAGAAACTGGATTTAGCTCTAATACTGATCCTTCTAGAGCAGAAATTGTAGTCCGGACTTTTAAAAGGAAAACTGCAGAGCGTCTGAGCAATGTGCATCCTCGAAGGGTTCAAACTACTATTGATCGGAGTGTTAAGAAAGCAGTTGTGCCGCATGAAGCCCATATTTCTAGCAAAAATCCTTCGACCAAGTGCATGCCTACTGTAGAGGATGCGGGGAGCTTTCTTTCGACTATACTTGATCCTGGGTTAGCTTCATTCATGAGGAACTATCTTATTGGTCATGTGAGTAACATTTTTGTGAAAGTTTCTTCCTCAAAGACACCAAAAGATTTATTGGTACATTGTGAAGAAATCAAGTTAGCTTTGGGCATGCTCAAAGACACCATTGTGAAAGTTTCTTCCTCAAAGACACCAGAAGATTTTTGTGAAGAAATCCTGTCATTGAGTCATTGA

Protein Analysis

384

Amino Acids

43.72

Weight (kDa)

9.46

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 9 - 129 1.9e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 753
AciI CCGC 4 cut(s) 232, 422, 851, 914
AclWI GGATC 2 cut(s) 722, 935
AcoI YGGCCR 2 cut(s) 154, 541
AcsI RAATTY 2 cut(s) 444, 475
AcvI CACGTG 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 369
AfaI GTAC 3 cut(s) 316, 633, 1041
AfiI CCNNNNNNNGG 2 cut(s) 550, 602
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 6 cut(s) 391, 400, 443, 566, 675, 812
AjnI CCWGG 1 cut(s) 943
AleI CACNNNNGTG 1 cut(s) 1088
AluBI AGCT 7 cut(s) 160, 290, 395, 717, 921, 953, 1064
AluI AGCT 7 cut(s) 160, 290, 395, 717, 921, 953, 1064
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 2 cut(s) 47, 563
AlwI GGATC 2 cut(s) 722, 935
AlwNI CAGNNNCTG 1 cut(s) 707
Ama87I CYCGRG 1 cut(s) 337
Aor13HI TCCGGA 1 cut(s) 753
AoxI GGCC 4 cut(s) 118, 154, 503, 541
ApoI RAATTY 2 cut(s) 444, 475
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 337
BalI TGGCCA 2 cut(s) 156, 543
BanII GRGCYC 1 cut(s) 292
BbrPI CACGTG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 584
Bbv12I GWGCWC 1 cut(s) 292
BccI CCATC 2 cut(s) 146, 503
BciT130I CCWGG 1 cut(s) 945
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 47, 563
BfaI CTAG 2 cut(s) 735, 870
BfmI CTRYAG 2 cut(s) 774, 903
BisI GCNGC 1 cut(s) 851
BlsI GCNGC 1 cut(s) 852
Bme1390I CCNGG 1 cut(s) 945
BmeT110I CYCGRG 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 1 cut(s) 945
BmsI GCATC 4 cut(s) 498, 610, 805, 901
BpiI GAAGAC 1 cut(s) 584
BpuEI CTTGAG 3 cut(s) 71, 600, 620
BsaAI YACGTR 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 57, 458, 944
BsaWI WCCGGW 1 cut(s) 753
Bsc4I CCNNNNNNNGG 2 cut(s) 550, 602
Bse1I ACTGG 1 cut(s) 712
Bse3DI GCAATG 1 cut(s) 796
BseAI TCCGGA 1 cut(s) 753
BseBI CCWGG 1 cut(s) 945
BseDI CCNNGG 3 cut(s) 57, 458, 944
BseGI GGATG 3 cut(s) 658, 796, 916
BseLI CCNNNNNNNGG 2 cut(s) 550, 602
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 2 cut(s) 305, 776
BseNI ACTGG 1 cut(s) 712
BseRI GAGGAG 1 cut(s) 325
BshFI GGCC 4 cut(s) 120, 156, 505, 543
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 1 cut(s) 754
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 550, 602
BsmAI GTCTC 2 cut(s) 47, 563
BsmFI GGGAC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 4 cut(s) 120, 156, 505, 543
Bso31I GGTCTC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 292
Bsp13I TCCGGA 1 cut(s) 753
Bsp143I GATC 5 cut(s) 211, 341, 727, 823, 940
BspACI CCGC 4 cut(s) 232, 422, 851, 914
BspANI GGCC 4 cut(s) 120, 156, 505, 543
BspCNI CTCAG 2 cut(s) 304, 777
BspEI TCCGGA 1 cut(s) 753
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 778
BspPI GGATC 2 cut(s) 722, 935
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 796
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 3 cut(s) 57, 458, 944
BssMI GATC 5 cut(s) 211, 341, 727, 823, 940
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 945
Bst4CI ACNGT 5 cut(s) 521, 574, 653, 679, 904
Bst6I CTCTTC 1 cut(s) 561
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 3 cut(s) 158, 896, 1073
BstDEI CTNAG 3 cut(s) 280, 291, 785
BstF5I GGATG 3 cut(s) 658, 796, 916
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 5 cut(s) 214, 344, 730, 826, 943
BstMAI GTCTC 2 cut(s) 47, 563
BstMBI GATC 5 cut(s) 211, 341, 727, 823, 940
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 945
BstNSI RCATGY 3 cut(s) 135, 898, 1075
BstSCI CCNGG 1 cut(s) 943
BstSFI CTRYAG 2 cut(s) 774, 903
BstV2I GAAGAC 1 cut(s) 584
BsuRI GGCC 4 cut(s) 120, 156, 505, 543
BtsCI GGATG 3 cut(s) 658, 796, 916
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 269, 579
Cac8I GCNNGC 3 cut(s) 158, 896, 1073
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 1 cut(s) 960
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 503
CseI GACGC 1 cut(s) 770
Csp6I GTAC 3 cut(s) 315, 632, 1040
CviAII CATG 8 cut(s) 41, 132, 545, 854, 895, 961, 983, 1072
CviQI GTAC 3 cut(s) 315, 632, 1040
DdeI CTNAG 3 cut(s) 280, 291, 785
DpnI GATC 5 cut(s) 213, 343, 729, 825, 942
DpnII GATC 5 cut(s) 211, 341, 727, 823, 940
DraI TTTAAA 1 cut(s) 763
DraIII CACNNNGTG 1 cut(s) 369
EaeI YGGCCR 2 cut(s) 154, 541
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 290
Eco72I CACGTG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 337
EcoICRI GAGCTC 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 943
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 8 cut(s) 44, 135, 548, 857, 898, 964, 986, 1075
FaqI GGGAC 1 cut(s) 21
FatI CATG 8 cut(s) 40, 131, 544, 853, 894, 960, 982, 1071
FauI CCCGC 1 cut(s) 907
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 851
FokI GGATG 3 cut(s) 645, 783, 923
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 851
FspBI CTAG 2 cut(s) 735, 870
GlaI GCGC 1 cut(s) 536
GluI GCNGC 1 cut(s) 851
HaeIII GGCC 4 cut(s) 120, 156, 505, 543
HapII CCGG 1 cut(s) 754
HgaI GACGC 1 cut(s) 770
HhaI GCGC 1 cut(s) 537
Hin1II CATG 8 cut(s) 44, 135, 548, 857, 898, 964, 986, 1075
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 3 cut(s) 170, 589, 1147
HpaII CCGG 1 cut(s) 754
Hpy166II GTNNAC 1 cut(s) 656
Hpy188I TCNGA 6 cut(s) 94, 216, 294, 474, 786, 828
Hpy188III TCNNGA 8 cut(s) 11, 50, 337, 617, 637, 735, 754, 961
Hpy8I GTNNAC 1 cut(s) 656
HpyAV CCTTC 8 cut(s) 146, 347, 544, 672, 681, 741, 798, 891
HpyCH4III ACNGT 5 cut(s) 521, 574, 653, 679, 904
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 7 cut(s) 306, 363, 378, 623, 776, 796, 894
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 3 cut(s) 280, 291, 785
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 8 cut(s) 44, 135, 548, 857, 898, 964, 986, 1075
HspAI GCGC 1 cut(s) 535
Kpn2I TCCGGA 1 cut(s) 753
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 5 cut(s) 211, 341, 727, 823, 940
LmnI GCTCC 1 cut(s) 918
LweI GCATC 4 cut(s) 498, 610, 805, 901
MaeI CTAG 2 cut(s) 735, 870
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 1 cut(s) 989
MalI GATC 5 cut(s) 213, 343, 729, 825, 942
MboI GATC 5 cut(s) 211, 341, 727, 823, 940
MboII GAAGA 8 cut(s) 578, 584, 652, 1002, 1061, 1092, 1130, 1142
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 2 cut(s) 156, 543
MluCI AATT 5 cut(s) 27, 200, 444, 475, 744
MluNI TGGCCA 2 cut(s) 156, 543
MlyI GAGTC 2 cut(s) 179, 598
Mox20I TGGCCA 2 cut(s) 156, 543
MroI TCCGGA 1 cut(s) 753
MscI TGGCCA 2 cut(s) 156, 543
MseI TTAA 2 cut(s) 762, 834
MslI CAYNNNNRTG 2 cut(s) 998, 1088
Msp20I TGGCCA 2 cut(s) 156, 543
MspI CCGG 1 cut(s) 754
MspR9I CCNGG 1 cut(s) 945
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 1 cut(s) 945
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 5 cut(s) 211, 341, 727, 823, 940
NlaIII CATG 8 cut(s) 44, 135, 548, 857, 898, 964, 986, 1075
NlaIV GGNNCC 1 cut(s) 504
NspI RCATGY 3 cut(s) 135, 898, 1075
OliI CACNNNNGTG 1 cut(s) 1088
PaeI GCATGC 2 cut(s) 898, 1075
PagI TCATGA 1 cut(s) 960
PctI GAATGC 1 cut(s) 365
PflFI GACNNNGTC 1 cut(s) 574
PkrI GCNGC 1 cut(s) 852
PleI GAGTC 2 cut(s) 178, 597
PmaCI CACGTG 1 cut(s) 350
PmlI CACGTG 1 cut(s) 350
PpsI GAGTC 2 cut(s) 178, 597
Ppu21I YACGTR 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 943
PspCI CACGTG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 943
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 1 cut(s) 503
PstI CTGCAG 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 707
PsyI GACNNNGTC 1 cut(s) 574
RsaI GTAC 3 cut(s) 316, 633, 1041
RsaNI GTAC 3 cut(s) 315, 632, 1040
RseI CAYNNNNRTG 2 cut(s) 998, 1088
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 762, 834
SatI GCNGC 1 cut(s) 851
Sau3AI GATC 5 cut(s) 211, 341, 727, 823, 940
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 2 cut(s) 179, 598
ScrFI CCNGG 1 cut(s) 945
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 4 cut(s) 498, 610, 805, 901
SfcI CTRYAG 2 cut(s) 774, 903
SmiMI CAYNNNNRTG 2 cut(s) 998, 1088
SmlI CTYRAG 3 cut(s) 50, 615, 635
SmoI CTYRAG 3 cut(s) 50, 615, 635
SphI GCATGC 2 cut(s) 898, 1075
Sse9I AATT 5 cut(s) 27, 200, 444, 475, 744
SsiI CCGC 4 cut(s) 232, 422, 851, 914
SspMI CTAG 2 cut(s) 735, 870
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 943
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 5 cut(s) 521, 574, 653, 679, 904
TaiI ACGT 1 cut(s) 352
TaqI TCGA 5 cut(s) 204, 492, 802, 884, 929
TasI AATT 5 cut(s) 27, 200, 444, 475, 744
TatI WGTACW 1 cut(s) 314
TauI GCSGC 1 cut(s) 853
Tru1I TTAA 2 cut(s) 762, 834
Tru9I TTAA 2 cut(s) 762, 834
TscAI CASTG 2 cut(s) 269, 579
TspDTI ATGAA 4 cut(s) 438, 870, 945, 949
TspRI CASTG 2 cut(s) 269, 579
Tth111I GACNNNGTC 1 cut(s) 574
XapI RAATTY 2 cut(s) 444, 475
XbaI TCTAGA 1 cut(s) 734
XceI RCATGY 3 cut(s) 135, 898, 1075
XspI CTAG 2 cut(s) 735, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.