Rh4DG039500

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000253
Physical Location & Seq
Forward (+)
6404744 .. 6411437
6694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG039500.1

Sequence Viewer

Length: 3156 bp
ATGGATGCAAGTGGCCACATTTGTACTGAAAGAGCTCTTGACGCCCGCGGAAAAGTACTTGAACAAGGTCCGGAATATCACAGATCCTCATTCCTGAGCAGCATACCTATTCATCCACCTCCTAAAGACAGAGTCACTTGGGTGACTGAGGTACAAGTTCATTCAGGGTACCTTACTTTTGATCAGAGTTCCGAGGATCAAGTAATAAGAACCTGTCGAACTCATGGTGCGTCATTTCAAGCTCGTACATTAGAAAAGGTCAACAATGATGAGGAAGGTGATTCTTTTACTCCTCAGGAAGATTTCTATCCTGTTCTCCATAAGATGCTGAGAGACAAACAAGACTGGAAACATACTCCTTATTTCCGAGGAGTAGCAACCTTCGAGCTTAGCACTATGGAGTGGACTGATTCTATAATGAGAAGATTTGGGGGTATTTTGAAGAATGCAGGAATACTTGGTGCTGTTGGAGTCTCTTGTTTTCCATACCACTATTCTACAAATACATGGAAAGCCTTTTGTGAATTATGGGGGCCACTAACCAACACACTGCACCATGGGAATGGAGAAATGGGCATTTCTTTATATGATATGAAAGTGATTGGAGGTTTACCAATTCTGGGGCATCCATATGAAGAATTTATCCCTGTCAACAGTGAGTTGCATTGCAGTGAGCGCTATCCATCTACAGTTGCTGAGCTCTTGCGCATTCACTCTCAGTTGTGTACTTTTCACAAAAGGGATTTCATTTATTGGGATGAGTGGGTTGATTATTTTTACCGCGGGAAGATATTGTACGCGGCTTATGGTGAGGTTGGGAATAGAAAGGCTTATCCACATCAAGGCAGATTCTCACGGCGGCAACCCGATTTAACTATTTCGAAGGAGGGGGCCCTGGCTGCATTTTTGGCATATTGGCTTAGCAGGTTTGTCTTACCCTCTAGTCATTCCAATCTCCGTCCCGACACATTTTATATGGCTTCTTTGATGGCACAAGGCATCAGGGTTTCTTTAGCACCTTCAGTACTGGGCTATATTTACCATGGTCTTGGCCTAGCTGCCACTGATCCAGAAGGGCCTGGAAATTCGAATGTTTGCTTTCCCATTCATTATGTTATTGGTTGGCTAGGAGAACACTTCCCCTGCTTATATAGAGCCCGAGCTGATAGTGACTTCCCAACTAACCATCCGTATTTGGCAAGATATGCCGGTATTGAGGCCGTTGATTTGGATATTTCATCGGCTAGACGTGTTTTCAGAACTGATATTTCTGTGATTTACCGTCCTAGTTCATTTATTGAACAAAGCGGTTGCTTTTTGACTGACGATAGTGGCCTGTCAAGTGATCAGTTCGAGTTTTTGGTTTGTATGCGCTCTTCATTGTTGCCGGTGAGAGTGGGACGTGATCTCTGCTTGGAACCATATTATCCGAACAGATTTGCTCGCCAATTTGGCTTTGATCAAGGGGTTCCCTCAAACAGACTCAGTTTTGGCCTTGCAAGAAGGCGACAGTGCTGCATTGAGGATTTAGCCAAGGCCCAGCAGGTACTCCTCCAAACAGATACCGGCGCTCGCTTTTACATTCCGCGTTCCACTTATAATGGGACATGTACCTGGACATATTGTAGGTGGTGGATGAGGGCTTGTGCACCATACCTAGGCAGGTCTGTGTCTAATGTTTACTTGACATTGACAAAACGTCGACTTGAGAAAAGAGATGATATATTTGTGATCAAATCCATCAGAGAGTTCTCTTCCAATTTGCGGAAAGAGGTCTTGTTTTCAGAAGAGGACATAAGTAGGTCAGCCGATTATGACAAGAATCCCCAACCTGCTAAAAGGACGAACAGGTCGGGTGAATATCGGAAAGCATCTTCGAGTAATTTTGAAGCTAGGCATTCAAAACGACAACGCAACGAGAAACATGGCATCAAAGAAACTACCAGAGCACCATTTCAAAATAGTGGGGCAGCAAAGACTCTCAAGTGTGCTCAATTTGAGAGATACACTGGTTATGAAGATGGCAGAATTGACGATATTACTTTTCCTCAGGATGGTTTTGTTCAGGACAGAGATGTTGCCTCCTATGATGGTGACAAAATCACTACTCCAAGGTTGAAATCAGTAATATCACGAGTTACAGAATCAAATGATTCAGAAGTCGAGACACAGCTACAGGACTTGGAACAAAAGTCAAGGAGACCACTTGAATTGGAGCCAGAAAATTTGGAACCAAAATCAATTTGCTCAACGTCTAAAGAATGTGATGTAGGGGAACTAGTAGAGACCCCAGCGCTGGAGACGAATAATTCTGAACCAAACCCGCATCAATCAGAGCCTAAGTTGAAAGATTCCAAAATCCTAGCTGAAGATGTCCATGACTCTGTTAGTGGAGCCACTGAACCTATCGATCCCAACGCCTCCGAGCATATTGATGAAGGTATTAACTCACTCACTGAGGCTACATCGACTCCGCATGAGATTTTTGGTGAAGGATTGAATAAACTCCGGATGGATTTTATTATCGCCGAGATACAACAGATCCTAGACAAATTGAACTCGTCTCAATCATTTGGGGCAATTCTTGATTGCCAGGACGAAGTTTCAAAAACACTTGATGTGTTGGAGTTGATGTTCAAAACCCTCGGCTCTGGTAAGGACAGATTTGAGTGGTTTACTGCAAAAGTTTATCTAACCTTTGACTTGGCAGCTCAGCTTTCTCAAGACATGAGCATTATTGAGAAAGATTATAGATTGGACATTGAGCGCATCAATGAGTTAATTCAAAACCACAAAAAGTGTCAAGCTGCCAAGAAAGTCCTTGATTCGGAATTATTGAGCCTTAACCTGGAACTTGCAAGTTTAAAGACCACCGAACGAGGTATTATTGAGGTAGAAGAGAAAGCTCAACGGCTGCGCAAGGATTATGAGACTGCAAAAAGTCACCTTGAAAAGAAAATAAGTTGGTCCGAGGCTTCTCTTGAGCGTCAAAACAAACTGGATGAAGAGCTTCGTCAGGCAAGGATTGAGGCTCGAGAGGATAAACTTGCAGAATTTAAGAATGTCGAGAGCTCATTTAAAGTCCGGCAAGAGGAGCTGGAGAAGCAAATAGACACTTTGAAGTCGTTTGGTCAACAGCTTAAGCAAAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1051

Amino Acids

120.11

Weight (kDa)

5.94

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 151 - 546 3.6e-38 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1599
AasI GACNNNNNNGTC 1 cut(s) 1849
Acc16I TGCGCA 2 cut(s) 707, 2918
Acc36I ACCTGC 4 cut(s) 915, 1534, 1653, 1840
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 1702
AccII CGCG 4 cut(s) 48, 783, 800, 1588
AccIII TCCGGA 2 cut(s) 70, 2508
AclWI GGATC 5 cut(s) 78, 204, 1061, 2405, 2536
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 4 cut(s) 638, 1084, 2224, 3053
AcuI CTGAAG 2 cut(s) 1005, 2388
AcyI GRCGYC 1 cut(s) 42
AfeI AGCGCT 2 cut(s) 677, 2295
AfiI CCNNNNNNNGG 9 cut(s) 620, 842, 1658, 1764, 2054, 2296, 2827, 2848, 3091
AflII CTTAAG 1 cut(s) 3140
AflIII ACRYGT 2 cut(s) 1249, 1607
AhdI GACNNNNNGTC 1 cut(s) 1698
AhlI ACTAGT 1 cut(s) 2278
AjiI CACGTC 2 cut(s) 1250, 1403
AjnI CCWGG 5 cut(s) 894, 1078, 1613, 2592, 2847
AleI CACNNNNGTG 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 2618, 2650
Alw21I GWGCWC 6 cut(s) 37, 702, 1651, 1951, 1993, 3074
Alw26I GTCTC 8 cut(s) 327, 478, 2159, 2194, 2279, 2294, 2568, 2924
Alw44I GTGCAC 1 cut(s) 1647
AlwI GGATC 5 cut(s) 78, 204, 1061, 2405, 2536
AlwNI CAGNNNCTG 1 cut(s) 695
Ama87I CYCGRG 2 cut(s) 1158, 3033
Aor13HI TCCGGA 2 cut(s) 70, 2508
Aor51HI AGCGCT 2 cut(s) 677, 2295
AoxI GGCC 9 cut(s) 13, 533, 891, 1051, 1076, 1218, 1333, 1492, 1536
ApaI GGGCCC 1 cut(s) 895
ApaLI GTGCAC 1 cut(s) 1647
ApeKI GCWGC 8 cut(s) 99, 899, 1058, 1515, 1970, 2708, 2807, 2914
ApoI RAATTY 4 cut(s) 638, 1084, 2224, 3053
Asp700I GAANNNNTTC 1 cut(s) 3009
Asp718I GGTACC 1 cut(s) 168
AspA2I CCTAGG 1 cut(s) 1657
AspLEI GCGC 7 cut(s) 678, 708, 1374, 1571, 2296, 2769, 2919
AspS9I GGNCC 7 cut(s) 68, 533, 891, 892, 1076, 1537, 2967
AsuHPI GGTGA 8 cut(s) 154, 290, 821, 1402, 1868, 2105, 2501, 2936
AsuII TTCGAA 2 cut(s) 881, 1088
AvaI CYCGRG 2 cut(s) 1158, 3033
AvaII GGWCC 2 cut(s) 68, 2967
AvrII CCTAGG 1 cut(s) 1657
AxyI CCTNAGG 2 cut(s) 294, 2049
BaeGI GKGCMC 2 cut(s) 895, 1651
BaeI ACNNNNGTAYC 2 cut(s) 1996, 2029
BalI TGGCCA 1 cut(s) 15
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 5 cut(s) 37, 702, 895, 1159, 3074
BarI GAAGNNNNNNTAC 4 cut(s) 779, 811, 1360, 1392
BauI CACGAG 1 cut(s) 2133
Bbv12I GWGCWC 6 cut(s) 37, 702, 1651, 1951, 1993, 3074
BbvI GCAGC 8 cut(s) 111, 886, 1045, 1502, 1982, 2720, 2794, 2901
BccI CCATC 8 cut(s) 691, 982, 1194, 1748, 2015, 2048, 2084, 2506
BceAI ACGGC 3 cut(s) 872, 1205, 2927
BcgI CGANNNNNNTGC 2 cut(s) 1497, 1531
BciT130I CCWGG 5 cut(s) 896, 1080, 1615, 2594, 2849
BclI TGATCA 4 cut(s) 181, 1345, 1459, 1731
BcoDI GTCTC 8 cut(s) 327, 478, 2159, 2194, 2279, 2294, 2568, 2924
BcuI ACTAGT 1 cut(s) 2278
BfmI CTRYAG 2 cut(s) 687, 2174
BfoI RGCGCY 3 cut(s) 679, 1572, 2297
BfrI CTTAAG 1 cut(s) 3140
BfuAI ACCTGC 4 cut(s) 915, 1534, 1653, 1840
BglI GCCNNNNNGGC 1 cut(s) 1452
BlnI CCTAGG 1 cut(s) 1657
BlpI GCTNAGC 4 cut(s) 389, 696, 920, 2712
BmcAI AGTACT 2 cut(s) 57, 1026
Bme1390I CCNGG 5 cut(s) 896, 1080, 1615, 2594, 2849
Bme18I GGWCC 2 cut(s) 68, 2967
BmeRI GACNNNNNGTC 1 cut(s) 1698
BmeT110I CYCGRG 2 cut(s) 1158, 3033
BmgBI CACGTC 2 cut(s) 1250, 1403
BmgT120I GGNCC 7 cut(s) 68, 533, 891, 892, 1076, 1537, 2967
BmiI GGNNCC 9 cut(s) 170, 534, 892, 893, 1419, 1470, 2217, 2232, 2395
BmrFI CCNGG 5 cut(s) 896, 1080, 1615, 2594, 2849
BmrI ACTGGG 1 cut(s) 1037
BmsI GCATC 7 cut(s) 315, 634, 1008, 1880, 1938, 2335, 2778
BmuI ACTGGG 1 cut(s) 1037
BpmI CTGGAG 2 cut(s) 2318, 3119
Bpu10I CCTNAGC 1 cut(s) 95
Bpu1102I GCTNAGC 4 cut(s) 389, 696, 920, 2712
Bpu14I TTCGAA 2 cut(s) 881, 1088
BpuEI CTTGAG 4 cut(s) 1727, 1967, 2706, 3002
Bsa29I ATCGAT 1 cut(s) 2409
BsaBI GATNNNNATC 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 2 cut(s) 2194, 2279
BsaWI WCCGGW 2 cut(s) 70, 2508
BsaXI ACNNNNNCTCC 4 cut(s) 2455, 2485, 2618, 2648
Bsc4I CCNNNNNNNGG 9 cut(s) 620, 842, 1658, 1764, 2054, 2296, 2827, 2848, 3091
Bse118I RCCGGY 3 cut(s) 1208, 1387, 1565
Bse1I ACTGG 4 cut(s) 350, 1032, 2014, 3003
Bse21I CCTNAGG 2 cut(s) 294, 2049
Bse3DI GCAATG 1 cut(s) 664
Bse8I GATNNNNATC 1 cut(s) 306
BseAI TCCGGA 2 cut(s) 70, 2508
BseBI CCWGG 5 cut(s) 896, 1080, 1615, 2594, 2849
BseCI ATCGAT 1 cut(s) 2409
BseGI GGATG 9 cut(s) 10, 112, 625, 763, 1186, 1641, 2059, 2517, 3007
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 9 cut(s) 620, 842, 1658, 1764, 2054, 2296, 2827, 2848, 3091
BseMI GCAATG 1 cut(s) 664
BseNI ACTGG 4 cut(s) 350, 1032, 2014, 3003
BseRI GAGGAG 4 cut(s) 282, 384, 1541, 3107
BseSI GKGCMC 2 cut(s) 895, 1651
BseXI GCAGC 8 cut(s) 111, 886, 1045, 1502, 1982, 2720, 2794, 2901
BseYI CCCAGC 2 cut(s) 1539, 2290
BsgI GTGCAG 1 cut(s) 536
Bsh1236I CGCG 4 cut(s) 48, 783, 800, 1588
BshFI GGCC 9 cut(s) 15, 535, 893, 1053, 1078, 1220, 1335, 1494, 1538
BshNI GGYRCC 1 cut(s) 168
BshVI ATCGAT 1 cut(s) 2409
BsiHKAI GWGCWC 6 cut(s) 37, 702, 1651, 1951, 1993, 3074
BsiHKCI CYCGRG 2 cut(s) 1158, 3033
BsiSI CCGG 6 cut(s) 71, 1209, 1388, 1566, 2509, 3085
BslFI GGGAC 3 cut(s) 945, 1413, 1618
BslI CCNNNNNNNGG 9 cut(s) 620, 842, 1658, 1764, 2054, 2296, 2827, 2848, 3091
BsmAI GTCTC 8 cut(s) 327, 478, 2159, 2194, 2279, 2294, 2568, 2924
BsmBI CGTCTC 2 cut(s) 2294, 2568
BsmFI GGGAC 3 cut(s) 945, 1413, 1618
BsmI GAATGC 3 cut(s) 451, 708, 1897
BsnI GGCC 9 cut(s) 15, 535, 893, 1053, 1078, 1220, 1335, 1494, 1538
Bso31I GGTCTC 2 cut(s) 2194, 2279
BsoBI CYCGRG 2 cut(s) 1158, 3033
Bsp119I TTCGAA 2 cut(s) 881, 1088
Bsp120I GGGCCC 1 cut(s) 891
Bsp1286I GDGCHC 8 cut(s) 37, 702, 895, 1159, 1651, 1951, 1993, 3074
Bsp13I TCCGGA 2 cut(s) 70, 2508
Bsp1720I GCTNAGC 4 cut(s) 389, 696, 920, 2712
Bsp19I CCATGG 2 cut(s) 556, 1042
BspANI GGCC 9 cut(s) 15, 535, 893, 1053, 1078, 1220, 1335, 1494, 1538
BspDI ATCGAT 1 cut(s) 2409
BspEI TCCGGA 2 cut(s) 70, 2508
BspFNI CGCG 4 cut(s) 48, 783, 800, 1588
BspLI GGNNCC 9 cut(s) 170, 534, 892, 893, 1419, 1470, 2217, 2232, 2395
BspMI ACCTGC 4 cut(s) 915, 1534, 1653, 1840
BspPI GGATC 5 cut(s) 78, 204, 1061, 2405, 2536
BspQI GCTCTTC 2 cut(s) 1381, 3000
BspT104I TTCGAA 2 cut(s) 881, 1088
BspT107I GGYRCC 1 cut(s) 168
BspTI CTTAAG 1 cut(s) 3140
BspTNI GGTCTC 2 cut(s) 2194, 2279
BsrDI GCAATG 1 cut(s) 664
BsrFI RCCGGY 3 cut(s) 1208, 1387, 1565
BsrI ACTGG 4 cut(s) 350, 1032, 2014, 3003
BssAI RCCGGY 3 cut(s) 1208, 1387, 1565
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 2133
BssT1I CCWWGG 5 cut(s) 556, 1042, 1533, 1657, 2111
Bst2BI CACGAG 1 cut(s) 2133
Bst2UI CCWGG 5 cut(s) 896, 1080, 1615, 2594, 2849
Bst4CI ACNGT 4 cut(s) 656, 691, 1283, 1512
Bst6I CTCTTC 5 cut(s) 1381, 1759, 1782, 2892, 3000
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 3140
BstAPI GCANNNNNTGC 1 cut(s) 1205
BstBI TTCGAA 2 cut(s) 881, 1088
BstC8I GCNNGC 3 cut(s) 46, 1444, 1573
BstDSI CCRYGG 4 cut(s) 46, 556, 781, 1042
BstF5I GGATG 9 cut(s) 10, 112, 625, 763, 1186, 1641, 2059, 2517, 3007
BstFNI CGCG 4 cut(s) 48, 783, 800, 1588
BstH2I RGCGCY 3 cut(s) 679, 1572, 2297
BstHHI GCGC 7 cut(s) 678, 708, 1374, 1571, 2296, 2769, 2919
BstMAI GTCTC 8 cut(s) 327, 478, 2159, 2194, 2279, 2294, 2568, 2924
BstMWI GCNNNNNNNGC 8 cut(s) 41, 675, 899, 908, 1205, 1452, 3094, 3103
BstNI CCWGG 5 cut(s) 896, 1080, 1615, 2594, 2849
BstNSI RCATGY 1 cut(s) 1611
BstSCI CCNGG 5 cut(s) 894, 1078, 1613, 2592, 2847
BstSFI CTRYAG 2 cut(s) 687, 2174
BstSLI GKGCMC 2 cut(s) 895, 1651
BstUI CGCG 4 cut(s) 48, 783, 800, 1588
BstV1I GCAGC 8 cut(s) 111, 886, 1045, 1502, 1982, 2720, 2794, 2901
BstX2I RGATCY 2 cut(s) 83, 2541
BstXI CCANNNNNNTGG 2 cut(s) 563, 1049
BstYI RGATCY 2 cut(s) 83, 2541
Bsu15I ATCGAT 1 cut(s) 2409
Bsu36I CCTNAGG 2 cut(s) 294, 2049
BsuRI GGCC 9 cut(s) 15, 535, 893, 1053, 1078, 1220, 1335, 1494, 1538
BsuTUI ATCGAT 1 cut(s) 2409
BtgI CCRYGG 4 cut(s) 46, 556, 781, 1042
BtrI CACGTC 2 cut(s) 1250, 1403
BtsCI GGATG 9 cut(s) 10, 112, 625, 763, 1186, 1641, 2059, 2517, 3007
BtsI GCAGTG 2 cut(s) 548, 676
BtsIMutI CAGTG 8 cut(s) 548, 661, 676, 1062, 1517, 2007, 2397, 2454
BveI ACCTGC 4 cut(s) 915, 1534, 1653, 1840
Cac8I GCNNGC 3 cut(s) 46, 1444, 1573
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 7 cut(s) 678, 708, 1374, 1571, 2296, 2769, 2919
Cfr10I RCCGGY 3 cut(s) 1208, 1387, 1565
Cfr13I GGNCC 7 cut(s) 68, 533, 891, 892, 1076, 1537, 2967
Cfr42I CCGCGG 2 cut(s) 49, 784
ClaI ATCGAT 1 cut(s) 2409
CseI GACGC 3 cut(s) 50, 219, 2975
CspCI CAANNNNNGTGG 2 cut(s) 2193, 2228
CviAII CATG 9 cut(s) 224, 507, 557, 1043, 1608, 1925, 2378, 2477, 2728
DraI TTTAAA 2 cut(s) 2865, 3079
DrdI GACNNNNNNGTC 1 cut(s) 1849
DriI GACNNNNNGTC 1 cut(s) 1698
DseDI GACNNNNNNGTC 1 cut(s) 1849
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 5 cut(s) 1381, 1759, 1782, 2892, 3000
Eam1105I GACNNNNNGTC 1 cut(s) 1698
EarI CTCTTC 5 cut(s) 1381, 1759, 1782, 2892, 3000
Ecl136II GAGCTC 3 cut(s) 35, 700, 3072
Eco130I CCWWGG 5 cut(s) 556, 1042, 1533, 1657, 2111
Eco24I GRGCYC 5 cut(s) 37, 702, 895, 1159, 3074
Eco31I GGTCTC 2 cut(s) 2194, 2279
Eco47I GGWCC 2 cut(s) 68, 2967
Eco47III AGCGCT 2 cut(s) 677, 2295
Eco53kI GAGCTC 3 cut(s) 35, 700, 3072
Eco57I CTGAAG 2 cut(s) 1005, 2388
Eco81I CCTNAGG 2 cut(s) 294, 2049
Eco88I CYCGRG 2 cut(s) 1158, 3033
EcoICRI GAGCTC 3 cut(s) 35, 700, 3072
EcoO109I RGGNCCY 3 cut(s) 891, 892, 1076
EcoRII CCWGG 5 cut(s) 894, 1078, 1613, 2592, 2847
EcoT14I CCWWGG 5 cut(s) 556, 1042, 1533, 1657, 2111
EcoT38I GRGCYC 5 cut(s) 37, 702, 895, 1159, 3074
ErhI CCWWGG 5 cut(s) 556, 1042, 1533, 1657, 2111
Esp3I CGTCTC 2 cut(s) 2294, 2568
FaeI CATG 9 cut(s) 227, 510, 560, 1046, 1611, 1928, 2381, 2480, 2731
FaqI GGGAC 3 cut(s) 945, 1413, 1618
FatI CATG 9 cut(s) 223, 506, 556, 1042, 1607, 1924, 2377, 2476, 2727
FauI CCCGC 3 cut(s) 53, 776, 2331
FauNDI CATATG 1 cut(s) 631
FbaI TGATCA 4 cut(s) 181, 1345, 1459, 1731
FblI GTMKAC 1 cut(s) 1702
FokI GGATG 9 cut(s) 17, 99, 612, 770, 1173, 1648, 2066, 2524, 3014
FriOI GRGCYC 5 cut(s) 37, 702, 895, 1159, 3074
FspI TGCGCA 2 cut(s) 707, 2918
GlaI GCGC 7 cut(s) 677, 707, 1373, 1570, 2295, 2768, 2918
GsaI CCCAGC 2 cut(s) 1543, 2294
GsuI CTGGAG 2 cut(s) 2318, 3119
HaeII RGCGCY 3 cut(s) 679, 1572, 2297
HaeIII GGCC 9 cut(s) 15, 535, 893, 1053, 1078, 1220, 1335, 1494, 1538
HapII CCGG 6 cut(s) 71, 1209, 1388, 1566, 2509, 3085
HgaI GACGC 3 cut(s) 50, 219, 2975
HhaI GCGC 7 cut(s) 678, 708, 1374, 1571, 2296, 2769, 2919
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 9 cut(s) 227, 510, 560, 1046, 1611, 1928, 2381, 2480, 2731
Hin6I GCGC 7 cut(s) 676, 706, 1372, 1569, 2294, 2767, 2917
HinP1I GCGC 7 cut(s) 676, 706, 1372, 1569, 2294, 2767, 2917
HincII GTYRAC 4 cut(s) 262, 652, 1703, 3134
HindII GTYRAC 4 cut(s) 262, 652, 1703, 3134
HpaII CCGG 6 cut(s) 71, 1209, 1388, 1566, 2509, 3085
HphI GGTGA 8 cut(s) 154, 290, 821, 1402, 1868, 2105, 2501, 2936
Hpy99I CGWCG 1 cut(s) 1704
HpyAV CCTTC 8 cut(s) 269, 391, 877, 1029, 1067, 1497, 2432, 2486
HpyCH4III ACNGT 4 cut(s) 656, 691, 1283, 1512
HpyCH4IV ACGT 4 cut(s) 1249, 1402, 1699, 2252
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 675, 899, 908, 1205, 1452, 3094, 3103
HpySE526I ACGT 4 cut(s) 1249, 1402, 1699, 2252
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 9 cut(s) 227, 510, 560, 1046, 1611, 1928, 2381, 2480, 2731
HspAI GCGC 7 cut(s) 676, 706, 1372, 1569, 2294, 2767, 2917
Kpn2I TCCGGA 2 cut(s) 70, 2508
KpnI GGTACC 1 cut(s) 172
Ksp22I TGATCA 4 cut(s) 181, 1345, 1459, 1731
KspI CCGCGG 2 cut(s) 49, 784
LguI GCTCTTC 2 cut(s) 1381, 3000
LmnI GCTCC 3 cut(s) 2215, 2393, 3094
Lsp1109I GCAGC 8 cut(s) 111, 886, 1045, 1502, 1982, 2720, 2794, 2901
LweI GCATC 7 cut(s) 315, 634, 1008, 1880, 1938, 2335, 2778
MaeII ACGT 4 cut(s) 1249, 1402, 1699, 2252
MaeIII GTNAC 6 cut(s) 133, 142, 1169, 2093, 2137, 2942
MflI RGATCY 2 cut(s) 83, 2541
MhlI GDGCHC 8 cut(s) 37, 702, 895, 1159, 1651, 1951, 1993, 3074
MlsI TGGCCA 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 6 cut(s) 141, 480, 1476, 1972, 2375, 2464
MmeI TCCRAC 2 cut(s) 448, 2604
Mox20I TGGCCA 1 cut(s) 15
MroI TCCGGA 2 cut(s) 70, 2508
MroXI GAANNNNTTC 1 cut(s) 3009
MscI TGGCCA 1 cut(s) 15
MseI TTAA 8 cut(s) 872, 2445, 2780, 2844, 2864, 3057, 3078, 3141
MslI CAYNNNNRTG 5 cut(s) 140, 561, 630, 669, 2433
Msp20I TGGCCA 1 cut(s) 15
MspA1I CMGCKG 2 cut(s) 48, 783
MspCI CTTAAG 1 cut(s) 3140
MspI CCGG 6 cut(s) 71, 1209, 1388, 1566, 2509, 3085
MspR9I CCNGG 5 cut(s) 896, 1080, 1615, 2594, 2849
Mva1269I GAATGC 3 cut(s) 451, 708, 1897
MvaI CCWGG 5 cut(s) 896, 1080, 1615, 2594, 2849
MvnI CGCG 4 cut(s) 48, 783, 800, 1588
MwoI GCNNNNNNNGC 8 cut(s) 41, 675, 899, 908, 1205, 1452, 3094, 3103
NcoI CCATGG 2 cut(s) 556, 1042
NdeI CATATG 1 cut(s) 631
NlaIII CATG 9 cut(s) 227, 510, 560, 1046, 1611, 1928, 2381, 2480, 2731
NlaIV GGNNCC 9 cut(s) 170, 534, 892, 893, 1419, 1470, 2217, 2232, 2395
NmeAIII GCCGAG 2 cut(s) 2554, 2625
NmuCI GTSAC 5 cut(s) 133, 142, 1169, 2093, 2942
NsbI TGCGCA 2 cut(s) 707, 2918
NspI RCATGY 1 cut(s) 1611
NspV TTCGAA 2 cut(s) 881, 1088
OliI CACNNNNGTG 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 3033
PciI ACATGT 1 cut(s) 1607
PciSI GCTCTTC 2 cut(s) 1381, 3000
PctI GAATGC 3 cut(s) 451, 708, 1897
PdmI GAANNNNTTC 1 cut(s) 3009
PfeI GAWTC 8 cut(s) 281, 410, 849, 1822, 2144, 2153, 2351, 2825
PflFI GACNNNGTC 1 cut(s) 131
PleI GAGTC 6 cut(s) 140, 479, 1476, 1972, 2375, 2464
PpsI GAGTC 6 cut(s) 140, 479, 1476, 1972, 2375, 2464
PscI ACATGT 1 cut(s) 1607
PsiI TTATAA 1 cut(s) 1599
Psp124BI GAGCTC 3 cut(s) 37, 702, 3074
Psp6I CCWGG 5 cut(s) 894, 1078, 1613, 2592, 2847
PspFI CCCAGC 2 cut(s) 1539, 2290
PspGI CCWGG 5 cut(s) 894, 1078, 1613, 2592, 2847
PspN4I GGNNCC 9 cut(s) 170, 534, 892, 893, 1419, 1470, 2217, 2232, 2395
PspOMI GGGCCC 1 cut(s) 891
PspPI GGNCC 7 cut(s) 68, 533, 891, 892, 1076, 1537, 2967
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 2 cut(s) 83, 2541
PsyI GACNNNGTC 1 cut(s) 131
RseI CAYNNNNRTG 5 cut(s) 140, 561, 630, 669, 2433
SacI GAGCTC 3 cut(s) 37, 702, 3074
SacII CCGCGG 2 cut(s) 49, 784
SalI GTCGAC 1 cut(s) 1701
SapI GCTCTTC 2 cut(s) 1381, 3000
SaqAI TTAA 8 cut(s) 872, 2445, 2780, 2844, 2864, 3057, 3078, 3141
Sau96I GGNCC 7 cut(s) 68, 533, 891, 892, 1076, 1537, 2967
ScaI AGTACT 2 cut(s) 57, 1026
SchI GAGTC 6 cut(s) 141, 480, 1476, 1972, 2375, 2464
ScrFI CCNGG 5 cut(s) 896, 1080, 1615, 2594, 2849
SduI GDGCHC 8 cut(s) 37, 702, 895, 1159, 1651, 1951, 1993, 3074
SfaNI GCATC 7 cut(s) 315, 634, 1008, 1880, 1938, 2335, 2778
SfcI CTRYAG 2 cut(s) 687, 2174
Sfr274I CTCGAG 1 cut(s) 3033
Sfr303I CCGCGG 2 cut(s) 49, 784
SfuI TTCGAA 2 cut(s) 881, 1088
SgrBI CCGCGG 2 cut(s) 49, 784
SinI GGWCC 2 cut(s) 68, 2967
SlaI CTCGAG 1 cut(s) 3033
SmiMI CAYNNNNRTG 5 cut(s) 140, 561, 630, 669, 2433
SmlI CTYRAG 6 cut(s) 1706, 1982, 2721, 2981, 3033, 3140
SmoI CTYRAG 6 cut(s) 1706, 1982, 2721, 2981, 3033, 3140
SpeI ACTAGT 1 cut(s) 2278
SstI GAGCTC 3 cut(s) 37, 702, 3074
StyD4I CCNGG 5 cut(s) 894, 1078, 1613, 2592, 2847
StyI CCWWGG 5 cut(s) 556, 1042, 1533, 1657, 2111
TaaI ACNGT 4 cut(s) 656, 691, 1283, 1512
TaiI ACGT 4 cut(s) 1252, 1405, 1702, 2255
TatI WGTACW 4 cut(s) 23, 55, 725, 1024
TauI GCSGC 2 cut(s) 803, 862
TfiI GAWTC 8 cut(s) 281, 410, 849, 1822, 2144, 2153, 2351, 2825
Tru1I TTAA 8 cut(s) 872, 2445, 2780, 2844, 2864, 3057, 3078, 3141
Tru9I TTAA 8 cut(s) 872, 2445, 2780, 2844, 2864, 3057, 3078, 3141
TscAI CASTG 8 cut(s) 555, 661, 676, 1069, 1517, 2014, 2404, 2461
TseFI GTSAC 5 cut(s) 133, 142, 1169, 2093, 2942
TseI GCWGC 8 cut(s) 99, 899, 1058, 1515, 1970, 2708, 2807, 2914
Tsp45I GTSAC 5 cut(s) 133, 142, 1169, 2093, 2942
TspGWI ACGGA 2 cut(s) 947, 1179
TspRI CASTG 8 cut(s) 555, 661, 676, 1069, 1517, 2014, 2404, 2461
Tth111I GACNNNGTC 1 cut(s) 131
Vha464I CTTAAG 1 cut(s) 3140
VneI GTGCAC 1 cut(s) 1647
VpaK11BI GGWCC 2 cut(s) 68, 2967
XapI RAATTY 4 cut(s) 638, 1084, 2224, 3053
XceI RCATGY 1 cut(s) 1611
XhoI CTCGAG 1 cut(s) 3033
XmaJI CCTAGG 1 cut(s) 1657
XmiI GTMKAC 1 cut(s) 1702
XmnI GAANNNNTTC 1 cut(s) 3009
ZrmI AGTACT 2 cut(s) 57, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.