Rmu_sc0005529.1_g000006

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005529.1
OG0000253
Physical Location & Seq
Reverse (-)
38806 .. 39234
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005529.1_g000006.1.cds

Sequence Viewer

Length: 429 bp
atggaatggacagaatcaatattagatcatttcacggggaagctggaccaagcaggaatatatggtgtcgttggtgtttctcgcttcccctatcattattgtgggaacacatggagagcattctgtgaactttggagtcctttgactaacaccttacaccatgggaatggagagatgagtgtgtccctttatgatttgaagcttattggtggtcttcccattctgggtgtcccatatgaagaattcattcctgcaaataaagaattacatcgtaatgggagatatccgcttacccttgttgagcttctgcgaatacattctgtattgagtgcatccaatgacaagacttatgtttcctggaggcaatggcttgctcatttttattgggaacgcttgatatatgcaacatatggagagactacatactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

142

Amino Acids

16.5

Weight (kDa)

6.13

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 3 cut(s) 43, 202, 304
AluI AGCT 3 cut(s) 43, 202, 304
Alw26I GTCTC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 242
Asp700I GAANNNNTTC 2 cut(s) 246, 316
AspS9I GGNCC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 371
BslFI GGGAC 2 cut(s) 169, 215
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 2 cut(s) 169, 215
BsmI GAATGC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 25
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 372
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 332
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 356
BstV2I GAAGAC 1 cut(s) 206
BstXI CCANNNNNNTGG 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 46
CviAII CATG 2 cut(s) 111, 161
CviJI RGCY 4 cut(s) 43, 202, 304, 370
CviKI_1 RGCY 4 cut(s) 43, 202, 304, 370
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 160
Eco32I GATATC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 356
EcoRV GATATC 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 114, 164
FaqI GGGAC 2 cut(s) 169, 215
FatI CATG 2 cut(s) 110, 160
FauNDI CATATG 2 cut(s) 235, 409
FokI GGATG 1 cut(s) 319
FspBI CTAG 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 379
Hin1II CATG 2 cut(s) 114, 164
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 14, 136
Hpy166II GTNNAC 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 254, 332, 404
Hsp92II CATG 2 cut(s) 114, 164
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 6 cut(s) 29, 39, 209, 264, 343, 370
LweI GCATC 1 cut(s) 341
MaeI CTAG 1 cut(s) 427
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 206, 251
MluCI AATT 2 cut(s) 242, 263
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 1 cut(s) 354
MroXI GAANNNNTTC 2 cut(s) 246, 316
MslI CAYNNNNRTG 3 cut(s) 99, 165, 273
MspR9I CCNGG 1 cut(s) 358
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 1 cut(s) 358
NcoI CCATGG 1 cut(s) 160
NdeI CATATG 2 cut(s) 235, 409
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 114, 164
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 2 cut(s) 246, 316
PfeI GAWTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 356
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspPI GGNCC 1 cut(s) 46
RseI CAYNNNNRTG 3 cut(s) 99, 165, 273
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 358
SetI ASST 4 cut(s) 45, 155, 204, 306
SfaNI GCATC 1 cut(s) 341
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 3 cut(s) 99, 165, 273
Sse9I AATT 2 cut(s) 242, 263
SsiI CCGC 1 cut(s) 287
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 160
TasI AATT 2 cut(s) 242, 263
TfiI GAWTC 1 cut(s) 14
TspDTI ATGAA 2 cut(s) 235, 252
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 242
XmnI GAANNNNTTC 2 cut(s) 246, 316
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.