Rh7DG234000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000253
Physical Location & Seq
Forward (+)
23280855 .. 23281274
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG234000.1

Sequence Viewer

Length: 420 bp
ATGGATGATAACCTTAGAGGCGATGGTCACCTTTCTCCAAGGGATGATGGTGTTGCCTTCCATATTAGTGATGGAATCATTATCCCGAAGCTGAAATCAGTAATAGTACGAGCTCTAGCGTCGAATGATCCAGATCCTGAGCCCAATCCAAATGACTTGGAGGCGAGACCAAGGGAATCAGTGGCAAAAGAATGCGATATAGAGCCATTATCGGAGGCTCCAATTCCAGAGACAAAGGTTTCTGAACAACAACCTGAGCCTAAATTAAGGGACTTCAATATCCAAATTGAAGACACCCGTGACTCTGCTAGTGGGGCCACTGAACCTATCAATTCTAATGCCTCCGAGCATATTGATGAAGATATTAGCTCACCCACTGAGGCTACATCGACTCTGCATGAAATTTTGGTGAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.18

Weight (kDa)

4.36

Isoelectric Point (pI)

62.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 122, 128
AcsI RAATTY 1 cut(s) 402
AfaI GTAC 1 cut(s) 108
AgsI TTSAA 2 cut(s) 277, 290
AluBI AGCT 3 cut(s) 91, 113, 369
AluI AGCT 3 cut(s) 91, 113, 369
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 160, 224
AlwI GGATC 2 cut(s) 122, 128
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 1 cut(s) 315
ApoI RAATTY 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 20, 363
BanII GRGCYC 2 cut(s) 115, 144
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 115
BccI CCATC 3 cut(s) 17, 41, 65
BcoDI GTCTC 2 cut(s) 160, 224
BfaI CTAG 2 cut(s) 116, 309
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 219, 316
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 2 cut(s) 138, 255
BsaBI GATNNNNATC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 38, 170
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 38, 170
BseGI GGATG 2 cut(s) 10, 49
BseJI GATNNNNATC 1 cut(s) 132
BseMII CTCAG 3 cut(s) 129, 246, 369
BshFI GGCC 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 160, 224
BsmFI GGGAC 1 cut(s) 284
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 1 cut(s) 317
Bso31I GGTCTC 1 cut(s) 160
Bsp1286I GDGCHC 2 cut(s) 115, 144
Bsp143I GATC 2 cut(s) 127, 133
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 3 cut(s) 130, 247, 370
BspLI GGNNCC 2 cut(s) 219, 316
BspPI GGATC 2 cut(s) 122, 128
BspTNI GGTCTC 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 38, 170
BssMI GATC 2 cut(s) 127, 133
BssT1I CCWWGG 2 cut(s) 38, 170
BstDEI CTNAG 4 cut(s) 14, 138, 255, 378
BstEII GGTNACC 1 cut(s) 26
BstF5I GGATG 2 cut(s) 10, 49
BstKTI GATC 2 cut(s) 130, 136
BstMAI GTCTC 2 cut(s) 160, 224
BstMBI GATC 2 cut(s) 127, 133
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstPI GGTNACC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 317
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 10, 49
BtsIMutI CAGTG 3 cut(s) 186, 318, 375
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 107
CviAII CATG 1 cut(s) 398
CviJI RGCY 9 cut(s) 91, 113, 142, 205, 218, 259, 317, 369, 383
CviKI_1 RGCY 9 cut(s) 91, 113, 142, 205, 218, 259, 317, 369, 383
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 4 cut(s) 14, 138, 255, 378
DpnI GATC 2 cut(s) 129, 135
DpnII GATC 2 cut(s) 127, 133
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 38, 170
Eco24I GRGCYC 2 cut(s) 115, 144
Eco31I GGTCTC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 26
EcoT14I CCWWGG 2 cut(s) 38, 170
EcoT38I GRGCYC 2 cut(s) 115, 144
ErhI CCWWGG 2 cut(s) 38, 170
FaeI CATG 1 cut(s) 401
FaiI YATR 4 cut(s) 63, 200, 351, 399
FaqI GGGAC 1 cut(s) 284
FatI CATG 1 cut(s) 397
FokI GGATG 2 cut(s) 17, 56
FriOI GRGCYC 2 cut(s) 115, 144
FspBI CTAG 2 cut(s) 116, 309
HaeIII GGCC 1 cut(s) 317
HgaI GACGC 1 cut(s) 108
Hin1II CATG 1 cut(s) 401
HinfI GANTC 4 cut(s) 75, 176, 302, 391
HphI GGTGA 2 cut(s) 20, 363
Hpy188I TCNGA 3 cut(s) 214, 244, 346
Hpy188III TCNNGA 4 cut(s) 85, 131, 137, 227
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 67, 406
HpyCH4V TGCA 1 cut(s) 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 4 cut(s) 14, 138, 255, 378
Hsp92II CATG 1 cut(s) 401
Kzo9I GATC 2 cut(s) 127, 133
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 4 cut(s) 144, 150, 240, 267
MaeI CTAG 2 cut(s) 116, 309
MaeIII GTNAC 2 cut(s) 26, 299
MalI GATC 2 cut(s) 129, 135
MboI GATC 2 cut(s) 127, 133
MboII GAAGA 2 cut(s) 302, 371
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 115, 144
MluCI AATT 5 cut(s) 222, 263, 285, 331, 402
MlyI GAGTC 2 cut(s) 296, 385
MnlI CCTC 5 cut(s) 11, 154, 208, 352, 373
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 2 cut(s) 66, 354
Mva1269I GAATGC 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 2 cut(s) 127, 133
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 2 cut(s) 219, 316
NmuCI GTSAC 2 cut(s) 26, 299
PctI GAATGC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 75, 176
PleI GAGTC 2 cut(s) 296, 385
PpsI GAGTC 2 cut(s) 296, 385
Psp124BI GAGCTC 1 cut(s) 115
PspEI GGTNACC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 219, 316
PspPI GGNCC 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 2 cut(s) 66, 354
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 266
Sau3AI GATC 2 cut(s) 127, 133
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 2 cut(s) 296, 385
SduI GDGCHC 2 cut(s) 115, 144
SetI ASST 8 cut(s) 15, 33, 93, 115, 240, 256, 328, 371
SmiMI CAYNNNNRTG 2 cut(s) 66, 354
Sse9I AATT 5 cut(s) 222, 263, 285, 331, 402
SspMI CTAG 2 cut(s) 116, 309
SstI GAGCTC 1 cut(s) 115
StyI CCWWGG 2 cut(s) 38, 170
TaqI TCGA 2 cut(s) 122, 389
TasI AATT 5 cut(s) 222, 263, 285, 331, 402
TfiI GAWTC 2 cut(s) 75, 176
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 3 cut(s) 186, 325, 382
TseFI GTSAC 2 cut(s) 26, 299
Tsp45I GTSAC 2 cut(s) 26, 299
TspDTI ATGAA 2 cut(s) 372, 414
TspRI CASTG 3 cut(s) 186, 325, 382
XapI RAATTY 1 cut(s) 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
XspI CTAG 2 cut(s) 116, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.