Rorug06G0087300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000253
Physical Location & Seq
Reverse (-)
11698577 .. 11702286
3710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0087300.1

Sequence Viewer

Length: 1905 bp
ATGGGAACCTCCCAGAGCCGCGAGGACTACATCTCCGACTCCGACGACTACAAAGAGGAGGAGGAAGAAGAAGAACGATCCGACGATACAGAAGAGTACCAAGACGCTCGAGAGAAACAGCCCACCCCAATCGGCGATCTCGACGCCAAGCTTAAAGCCTTGAAGCTCAAGTACGGTACTCCTTCCTCTTCCTCCTCCTCCACCTCATCGCCCGCCGTCTCACATAACGCCGTCAAGCTCTACCTCCACATCGGCGGCAACGCTCCCAGCGCCAAGTGGATCGTCTCCAACAAGCTCACCTCCTTCTCCTTCGTCAAGACCTCCAACGTCGACGGCGACAGCGACGACGACGACGACTACGAGGGCTCGTCGGATGGTAAAGGACAGTGGATTCTCAAGGTTGGGGGCAAGGTCCGAGCTAGGGTTTCCACCGACATGCAATTGAAGATGTTCGGCGATCAGCGACGTGTGGATTTCGTGTCTAGAGGCGTCTGGGCCCTGAAATTCTTCACCGACGAGCAGTACCGGAGATTCGTCACCGAATTTCAGGACTGCTTTTTTGAGAACTTGCACGGGCTTAAGGCGACGGAGGAGAACAAGGTCAAGATTTACGGTAAGGAGTTTTTGGGGTGGGTGAAGCCGGAGGCGGCGGACGACTCGGCGTGGGAGTATGCCGACGATTATGACATGGCCGCCAGGAGCCCCAATTCGGTGACGCCGGTCCGCTCCAACCAGCAATTGATGGAGGAGTTTGAGGAGGCTGCGAATGGAGGTGTTCAGAGCTTGACGCTTGGTGCATTGGATAATAGTTTCTTGGTGAATGATTCTGGTGTTCAGGTGTATAGGAATTTCAGAGATGGGATTCATGGGAAGGGTGTGGTTGTGAAATTCGACAGTGGGGGTGGTTCGAAATCGACACCGAAGAAGGCTCTGCTTATGAGGGGGGAGACTAATATGATGCTTATGAGTCCACTGAAGGAGGGAAAGCCTCAGGCAAATGGGCTTCAGCAGCTGGACATTGAGACTGGGAAGATTGTCACGGAATGGAAGTTTGAGAAGGATGGGACAGAGATTACAATGAGGGATATCACCAATGACACTAAGGAGTCGCAATTGGATCCTTCTGAGTCGACATTTCTGGGTTTGGATGATAACAGGCTTTGCCAGTGGGATATGCGTGAACGCAGAGGAATGGTTCAGAACATTGCTAGTTTGAATTCGCCGGTGCTGCAGTGGTCTCAGGGGCATCAGTTTTCTCGTGGGACCAATTTTCAGTGCTTTGCTACTACTGGAGATGGGTCTATTGTTGTTGGGTCTCTGGATGGGAAGATACGGTTGTATTCAAAGACCTCTATGAGGCAGGCAAAGACTGCTTTCCCAGGGCTGGGTTCCCCCATTACTCATGTTGATGTGACTTATGATGGGAAGTGGGTGTTGGGTACAACTGACACTTACTTGGTCCTTATATGCACTCTCTTCACTGACAAAGATGGAAAGACCAAGACTGGGTTTAGTGGTAGAATGGGAAACAAGATACCAGCTCCCAGGTTGTTGAAGCTGATCCCTCTGGACTCACATTTGGCTGGTGCAGACAATAAGTTTCATGGAGGCCACTTCTCATGGGTCACTGAAAGTGGTAAACAAGAGCGTCACCTTGTTGCAACAGTGGGAAAGTTCAGTGTGATATGGGATTTCCAGCAGGTGAAGAATAGTGCCCATGAATGTTACAGGAATCAGCAAGGCCTCAAGAGTTGTTACTGCTACAAGATCCTTTTGAAGGACGAGTCCATTGTGGAGAGCCGTTTCATGCACGATAAGTATGCTGTCAGTGACTCCCCTGAAGCTCCTCTGGTGGTGGCAACCCCGATGAAAGTCAGCTCGATCAGTCTCTCTGGCAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

634

Amino Acids

70.65

Weight (kDa)

5.63

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7135 PF23581 36 - 205 9.3e-72 Domain of unknown function (DUF7135)
VID27 PF08553 262 - 577 1.8e-45 VID27 C-terminal WD40-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1690
Acc36I ACCTGC 1 cut(s) 1690
AccBSI CCGCTC 1 cut(s) 726
AccI GTMKAC 2 cut(s) 330, 1130
AccII CGCG 1 cut(s) 21
AciI CCGC 7 cut(s) 19, 213, 255, 647, 650, 693, 724
AclWI GGATC 6 cut(s) 72, 287, 1112, 1125, 1555, 1762
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 5 cut(s) 503, 542, 847, 887, 1216
AcuI CTGAAG 3 cut(s) 989, 995, 1860
AcyI GRCGYC 3 cut(s) 144, 489, 716
AfaI GTAC 5 cut(s) 98, 173, 178, 524, 1441
AfiI CCNNNNNNNGG 7 cut(s) 421, 709, 1356, 1384, 1385, 1506, 1777
AflII CTTAAG 1 cut(s) 578
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 6 cut(s) 163, 445, 1216, 1344, 1555, 1777
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 3 cut(s) 695, 1378, 1544
AjuI GAANNNNNNNTTGG 2 cut(s) 1418, 1450
Alw26I GTCTC 7 cut(s) 223, 289, 941, 1016, 1242, 1320, 1892
AlwI GGATC 6 cut(s) 72, 287, 1112, 1125, 1555, 1762
AlwNI CAGNNNCTG 1 cut(s) 1012
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 4 cut(s) 495, 690, 1609, 1741
ApaI GGGCCC 1 cut(s) 499
ApeKI GCWGC 3 cut(s) 761, 1009, 1228
ApoI RAATTY 5 cut(s) 503, 542, 847, 887, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
Asp700I GAANNNNTTC 2 cut(s) 449, 506
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 6 cut(s) 412, 495, 496, 721, 1263, 1459
AsuHPI GGTGA 9 cut(s) 289, 502, 529, 646, 724, 829, 1081, 1643, 1714
AsuII TTCGAA 1 cut(s) 908
AvaI CYCGRG 1 cut(s) 108
AvaII GGWCC 4 cut(s) 412, 721, 1263, 1459
AxyI CCTNAGG 1 cut(s) 990
BaeGI GKGCMC 2 cut(s) 499, 1717
BaeI ACNNNNGTAYC 2 cut(s) 1322, 1355
BamHI GGATCC 1 cut(s) 1117
BanII GRGCYC 3 cut(s) 368, 499, 704
BarI GAAGNNNNNNTAC 2 cut(s) 155, 187
BauI CACGAG 1 cut(s) 1257
BbvI GCAGC 3 cut(s) 748, 1021, 1215
BccI CCATC 8 cut(s) 368, 736, 851, 1055, 1289, 1316, 1415, 1484
BceAI ACGGC 4 cut(s) 200, 215, 349, 1785
BcgI CGANNNNNNTGC 2 cut(s) 1802, 1836
BciT130I CCWGG 3 cut(s) 697, 1380, 1546
BcoDI GTCTC 7 cut(s) 223, 289, 941, 1016, 1242, 1320, 1892
BfaI CTAG 3 cut(s) 420, 483, 1209
BfmI CTRYAG 1 cut(s) 1229
BfoI RGCGCY 1 cut(s) 273
BfrI CTTAAG 1 cut(s) 578
BfuAI ACCTGC 1 cut(s) 1690
BisI GCNGC 7 cut(s) 19, 256, 648, 693, 762, 1010, 1229
BlsI GCNGC 7 cut(s) 20, 257, 649, 694, 763, 1011, 1230
Bme1390I CCNGG 3 cut(s) 697, 1380, 1546
Bme18I GGWCC 4 cut(s) 412, 721, 1263, 1459
BmeT110I CYCGRG 1 cut(s) 108
BmgBI CACGTC 1 cut(s) 467
BmgT120I GGNCC 6 cut(s) 412, 495, 496, 721, 1263, 1459
BmiI GGNNCC 6 cut(s) 7, 497, 701, 1119, 1264, 1390
BmrFI CCNGG 3 cut(s) 697, 1380, 1546
BmrI ACTGGG 2 cut(s) 1035, 1515
BmsI GCATC 2 cut(s) 948, 1255
BmuI ACTGGG 2 cut(s) 1035, 1515
BoxI GACNNNNGTC 1 cut(s) 719
BpmI CTGGAG 1 cut(s) 1311
Bpu14I TTCGAA 1 cut(s) 908
BpuEI CTTGAG 3 cut(s) 152, 380, 1730
BsaHI GRCGYC 3 cut(s) 144, 489, 716
BsaI GGTCTC 2 cut(s) 1242, 1320
BsaJI CCNNGG 3 cut(s) 1378, 1379, 1544
BsaWI WCCGGW 1 cut(s) 525
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 7 cut(s) 421, 709, 1356, 1384, 1385, 1506, 1777
Bse118I RCCGGY 2 cut(s) 718, 1222
Bse1I ACTGG 4 cut(s) 1030, 1165, 1294, 1510
Bse21I CCTNAGG 1 cut(s) 990
Bse3DI GCAATG 1 cut(s) 1203
BseBI CCWGG 3 cut(s) 697, 1380, 1546
BseDI CCNNGG 3 cut(s) 1378, 1379, 1544
BseGI GGATG 4 cut(s) 379, 1066, 1153, 1327
BseLI CCNNNNNNNGG 7 cut(s) 421, 709, 1356, 1384, 1385, 1506, 1777
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 3 cut(s) 1004, 1116, 1253
BseNI ACTGG 4 cut(s) 1030, 1165, 1294, 1510
BseRI GAGGAG 8 cut(s) 71, 74, 184, 187, 605, 761, 770, 1836
BseSI GKGCMC 2 cut(s) 499, 1717
BseXI GCAGC 3 cut(s) 748, 1021, 1215
BseYI CCCAGC 2 cut(s) 266, 1384
BsgI GTGCAG 1 cut(s) 1608
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 4 cut(s) 497, 692, 1611, 1743
BsiHKCI CYCGRG 1 cut(s) 108
BsiSI CCGG 4 cut(s) 526, 641, 719, 1223
BslFI GGGAC 2 cut(s) 1078, 1276
BslI CCNNNNNNNGG 7 cut(s) 421, 709, 1356, 1384, 1385, 1506, 1777
BsmAI GTCTC 7 cut(s) 223, 289, 941, 1016, 1242, 1320, 1892
BsmBI CGTCTC 2 cut(s) 223, 289
BsmFI GGGAC 2 cut(s) 1078, 1276
BsnI GGCC 4 cut(s) 497, 692, 1611, 1743
Bso31I GGTCTC 2 cut(s) 1242, 1320
BsoBI CYCGRG 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 908
Bsp120I GGGCCC 1 cut(s) 495
Bsp1286I GDGCHC 4 cut(s) 368, 499, 704, 1717
Bsp143I GATC 8 cut(s) 77, 136, 279, 457, 1117, 1560, 1767, 1881
BspACI CCGC 7 cut(s) 19, 213, 255, 647, 650, 693, 724
BspANI GGCC 4 cut(s) 497, 692, 1611, 1743
BspCNI CTCAG 3 cut(s) 1003, 1117, 1252
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 6 cut(s) 7, 497, 701, 1119, 1264, 1390
BspMAI CTGCAG 1 cut(s) 1233
BspMI ACCTGC 1 cut(s) 1690
BspPI GGATC 6 cut(s) 72, 287, 1112, 1125, 1555, 1762
BspT104I TTCGAA 1 cut(s) 908
BspTI CTTAAG 1 cut(s) 578
BspTNI GGTCTC 2 cut(s) 1242, 1320
BsrBI CCGCTC 1 cut(s) 726
BsrDI GCAATG 1 cut(s) 1203
BsrFI RCCGGY 2 cut(s) 718, 1222
BsrI ACTGG 4 cut(s) 1030, 1165, 1294, 1510
BssAI RCCGGY 2 cut(s) 718, 1222
BssECI CCNNGG 3 cut(s) 1378, 1379, 1544
BssMI GATC 8 cut(s) 77, 136, 279, 457, 1117, 1560, 1767, 1881
BssNI GRCGYC 3 cut(s) 144, 489, 716
BssSI CACGAG 1 cut(s) 1257
Bst2BI CACGAG 1 cut(s) 1257
Bst2UI CCWGG 3 cut(s) 697, 1380, 1546
Bst4CI ACNGT 6 cut(s) 176, 387, 614, 896, 1335, 1666
Bst6I CTCTTC 3 cut(s) 87, 193, 1481
BstACI GRCGYC 3 cut(s) 144, 489, 716
BstAFI CTTAAG 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 1370
BstBI TTCGAA 1 cut(s) 908
BstC8I GCNNGC 2 cut(s) 213, 1362
BstDEI CTNAG 4 cut(s) 990, 1101, 1125, 1239
BstENI CCTNNNNNAGG 2 cut(s) 1354, 1775
BstF5I GGATG 4 cut(s) 379, 1066, 1153, 1327
BstFNI CGCG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 8 cut(s) 80, 139, 282, 460, 1120, 1563, 1770, 1884
BstMAI GTCTC 7 cut(s) 223, 289, 941, 1016, 1242, 1320, 1892
BstMBI GATC 8 cut(s) 77, 136, 279, 457, 1117, 1560, 1767, 1881
BstMWI GCNNNNNNNGC 4 cut(s) 269, 1009, 1228, 1370
BstNI CCWGG 3 cut(s) 697, 1380, 1546
BstNSI RCATGY 1 cut(s) 439
BstPAI GACNNNNGTC 1 cut(s) 719
BstSCI CCNGG 3 cut(s) 695, 1378, 1544
BstSFI CTRYAG 1 cut(s) 1229
BstSLI GKGCMC 2 cut(s) 499, 1717
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 748, 1021, 1215
BstX2I RGATCY 2 cut(s) 1117, 1767
BstYI RGATCY 2 cut(s) 1117, 1767
Bsu36I CCTNAGG 1 cut(s) 990
BsuRI GGCC 4 cut(s) 497, 692, 1611, 1743
BtgZI GCGATG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 4 cut(s) 379, 1066, 1153, 1327
BtsI GCAGTG 1 cut(s) 1238
BveI ACCTGC 1 cut(s) 1690
Cac8I GCNNGC 2 cut(s) 213, 1362
CaiI CAGNNNCTG 1 cut(s) 1012
CfoI GCGC 1 cut(s) 272
Cfr10I RCCGGY 2 cut(s) 718, 1222
Cfr13I GGNCC 6 cut(s) 412, 495, 496, 721, 1263, 1459
CpoI CGGWCCG 1 cut(s) 721
CseI GACGC 6 cut(s) 113, 152, 478, 724, 796, 1637
Csp6I GTAC 5 cut(s) 97, 172, 177, 523, 1440
CspI CGGWCCG 1 cut(s) 721
CviAII CATG 8 cut(s) 436, 688, 866, 1403, 1604, 1620, 1718, 1807
CviQI GTAC 5 cut(s) 97, 172, 177, 523, 1440
DdeI CTNAG 4 cut(s) 990, 1101, 1125, 1239
DpnI GATC 8 cut(s) 79, 138, 281, 459, 1119, 1562, 1769, 1883
DpnII GATC 8 cut(s) 77, 136, 279, 457, 1117, 1560, 1767, 1881
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 3 cut(s) 87, 193, 1481
EarI CTCTTC 3 cut(s) 87, 193, 1481
EciI GGCGGA 1 cut(s) 665
Eco147I AGGCCT 1 cut(s) 1743
Eco24I GRGCYC 3 cut(s) 368, 499, 704
Eco31I GGTCTC 2 cut(s) 1242, 1320
Eco32I GATATC 1 cut(s) 1087
Eco47I GGWCC 4 cut(s) 412, 721, 1263, 1459
Eco57I CTGAAG 3 cut(s) 989, 995, 1860
Eco81I CCTNAGG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 108
EcoNI CCTNNNNNAGG 2 cut(s) 1354, 1775
EcoO109I RGGNCCY 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 1216
EcoRII CCWGG 3 cut(s) 695, 1378, 1544
EcoRV GATATC 1 cut(s) 1087
EcoT38I GRGCYC 3 cut(s) 368, 499, 704
Esp3I CGTCTC 2 cut(s) 223, 289
FaeI CATG 8 cut(s) 439, 691, 869, 1406, 1607, 1623, 1721, 1810
FaqI GGGAC 2 cut(s) 1078, 1276
FatI CATG 8 cut(s) 435, 687, 865, 1402, 1603, 1619, 1717, 1806
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 2 cut(s) 330, 1130
Fnu4HI GCNGC 7 cut(s) 19, 256, 648, 693, 762, 1010, 1229
FokI GGATG 4 cut(s) 386, 1073, 1160, 1334
FriOI GRGCYC 3 cut(s) 368, 499, 704
Fsp4HI GCNGC 7 cut(s) 19, 256, 648, 693, 762, 1010, 1229
FspBI CTAG 3 cut(s) 420, 483, 1209
GlaI GCGC 1 cut(s) 271
GluI GCNGC 7 cut(s) 19, 256, 648, 693, 762, 1010, 1229
GsaI CCCAGC 2 cut(s) 270, 1388
GsuI CTGGAG 1 cut(s) 1311
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 4 cut(s) 497, 692, 1611, 1743
HapII CCGG 4 cut(s) 526, 641, 719, 1223
HgaI GACGC 6 cut(s) 113, 152, 478, 724, 796, 1637
HhaI GCGC 1 cut(s) 272
Hin1I GRCGYC 3 cut(s) 144, 489, 716
Hin1II CATG 8 cut(s) 439, 691, 869, 1406, 1607, 1623, 1721, 1810
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 2 cut(s) 331, 1131
HindII GTYRAC 2 cut(s) 331, 1131
HindIII AAGCTT 1 cut(s) 149
HpaII CCGG 4 cut(s) 526, 641, 719, 1223
HphI GGTGA 9 cut(s) 289, 502, 529, 646, 724, 829, 1081, 1643, 1714
Hpy166II GTNNAC 5 cut(s) 331, 971, 1131, 1181, 1640
Hpy188I TCNGA 9 cut(s) 37, 43, 82, 373, 416, 780, 854, 1126, 1200
Hpy188III TCNNGA 9 cut(s) 110, 140, 316, 483, 548, 604, 1319, 1568, 1747
Hpy8I GTNNAC 5 cut(s) 331, 971, 1131, 1181, 1640
HpyAV CCTTC 9 cut(s) 192, 313, 319, 865, 919, 970, 1051, 1131, 1771
HpyCH4III ACNGT 6 cut(s) 176, 387, 614, 896, 1335, 1666
HpyCH4IV ACGT 2 cut(s) 327, 466
HpyCH4V TGCA 8 cut(s) 439, 571, 797, 1231, 1470, 1589, 1661, 1810
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 1009, 1228, 1370
HpyF3I CTNAG 4 cut(s) 990, 1101, 1125, 1239
HpySE526I ACGT 2 cut(s) 327, 466
Hsp92I GRCGYC 3 cut(s) 144, 489, 716
Hsp92II CATG 8 cut(s) 439, 691, 869, 1406, 1607, 1623, 1721, 1810
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 8 cut(s) 77, 136, 279, 457, 1117, 1560, 1767, 1881
LmnI GCTCC 5 cut(s) 268, 699, 731, 1546, 1849
Lsp1109I GCAGC 3 cut(s) 748, 1021, 1215
LweI GCATC 2 cut(s) 948, 1255
MaeI CTAG 3 cut(s) 420, 483, 1209
MaeII ACGT 2 cut(s) 327, 466
MaeIII GTNAC 9 cut(s) 535, 712, 1036, 1411, 1624, 1649, 1724, 1754, 1829
MalI GATC 8 cut(s) 79, 138, 281, 459, 1119, 1562, 1769, 1883
MbiI CCGCTC 1 cut(s) 726
MboI GATC 8 cut(s) 77, 136, 279, 457, 1117, 1560, 1767, 1881
MfeI CAATTG 3 cut(s) 440, 737, 1112
MflI RGATCY 2 cut(s) 1117, 1767
MhlI GDGCHC 4 cut(s) 368, 499, 704, 1717
MlyI GAGTC 8 cut(s) 32, 650, 976, 1115, 1136, 1565, 1793, 1826
MmeI TCCRAC 7 cut(s) 60, 66, 105, 312, 348, 351, 753
MroXI GAANNNNTTC 2 cut(s) 449, 506
MseI TTAA 2 cut(s) 153, 579
MslI CAYNNNNRTG 2 cut(s) 434, 1407
MspA1I CMGCKG 1 cut(s) 1012
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 4 cut(s) 526, 641, 719, 1223
MspR9I CCNGG 3 cut(s) 697, 1380, 1546
MunI CAATTG 3 cut(s) 440, 737, 1112
MvaI CCWGG 3 cut(s) 697, 1380, 1546
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 4 cut(s) 269, 1009, 1228, 1370
NdeII GATC 8 cut(s) 77, 136, 279, 457, 1117, 1560, 1767, 1881
NlaIII CATG 8 cut(s) 439, 691, 869, 1406, 1607, 1623, 1721, 1810
NlaIV GGNNCC 6 cut(s) 7, 497, 701, 1119, 1264, 1390
NmeAIII GCCGAG 1 cut(s) 638
NmuCI GTSAC 7 cut(s) 535, 712, 1036, 1411, 1624, 1649, 1829
NspI RCATGY 1 cut(s) 439
NspV TTCGAA 1 cut(s) 908
PaeR7I CTCGAG 1 cut(s) 108
PaqCI CACCTGC 1 cut(s) 1690
PasI CCCWGGG 1 cut(s) 1379
PceI AGGCCT 1 cut(s) 1743
PcsI WCGNNNNNNNCGW 5 cut(s) 138, 333, 339, 351, 357
PdmI GAANNNNTTC 2 cut(s) 449, 506
PfeI GAWTC 5 cut(s) 391, 531, 824, 862, 1732
PkrI GCNGC 7 cut(s) 20, 257, 649, 694, 763, 1011, 1230
PleI GAGTC 8 cut(s) 32, 650, 975, 1114, 1135, 1565, 1792, 1826
PpsI GAGTC 8 cut(s) 32, 650, 975, 1114, 1135, 1565, 1792, 1826
PshAI GACNNNNGTC 1 cut(s) 719
Psp6I CCWGG 3 cut(s) 695, 1378, 1544
PspFI CCCAGC 2 cut(s) 266, 1384
PspGI CCWGG 3 cut(s) 695, 1378, 1544
PspN4I GGNNCC 6 cut(s) 7, 497, 701, 1119, 1264, 1390
PspOMI GGGCCC 1 cut(s) 495
PspPI GGNCC 6 cut(s) 412, 495, 496, 721, 1263, 1459
PstI CTGCAG 1 cut(s) 1233
PstNI CAGNNNCTG 1 cut(s) 1012
PsuI RGATCY 2 cut(s) 1117, 1767
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 5 cut(s) 98, 173, 178, 524, 1441
RsaNI GTAC 5 cut(s) 97, 172, 177, 523, 1440
RseI CAYNNNNRTG 2 cut(s) 434, 1407
Rsr2I CGGWCCG 1 cut(s) 721
RsrII CGGWCCG 1 cut(s) 721
SalI GTCGAC 2 cut(s) 329, 1129
SaqAI TTAA 2 cut(s) 153, 579
SatI GCNGC 7 cut(s) 19, 256, 648, 693, 762, 1010, 1229
Sau3AI GATC 8 cut(s) 77, 136, 279, 457, 1117, 1560, 1767, 1881
Sau96I GGNCC 6 cut(s) 412, 495, 496, 721, 1263, 1459
SchI GAGTC 8 cut(s) 32, 650, 976, 1115, 1136, 1565, 1793, 1826
ScrFI CCNGG 3 cut(s) 697, 1380, 1546
SduI GDGCHC 4 cut(s) 368, 499, 704, 1717
SfaNI GCATC 2 cut(s) 948, 1255
SfcI CTRYAG 1 cut(s) 1229
Sfr274I CTCGAG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 908
SgrAI CRCCGGYG 1 cut(s) 1222
SgrDI CGTCGACG 1 cut(s) 329
SinI GGWCC 4 cut(s) 412, 721, 1263, 1459
SlaI CTCGAG 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 434, 1407
SmlI CTYRAG 5 cut(s) 108, 167, 395, 578, 1745
SmoI CTYRAG 5 cut(s) 108, 167, 395, 578, 1745
SseBI AGGCCT 1 cut(s) 1743
SsiI CCGC 7 cut(s) 19, 213, 255, 647, 650, 693, 724
SspMI CTAG 3 cut(s) 420, 483, 1209
StuI AGGCCT 1 cut(s) 1743
StyD4I CCNGG 3 cut(s) 695, 1378, 1544
TaaI ACNGT 6 cut(s) 176, 387, 614, 896, 1335, 1666
TaiI ACGT 2 cut(s) 330, 469
TaqI TCGA 8 cut(s) 109, 141, 330, 891, 908, 914, 1130, 1880
TauI GCSGC 4 cut(s) 21, 258, 650, 695
TfiI GAWTC 5 cut(s) 391, 531, 824, 862, 1732
Tru1I TTAA 2 cut(s) 153, 579
Tru9I TTAA 2 cut(s) 153, 579
TseFI GTSAC 7 cut(s) 535, 712, 1036, 1411, 1624, 1649, 1829
TseI GCWGC 3 cut(s) 761, 1009, 1228
Tsp45I GTSAC 7 cut(s) 535, 712, 1036, 1411, 1624, 1649, 1829
TspDTI ATGAA 5 cut(s) 854, 1592, 1734, 1795, 1883
TspGWI ACGGA 2 cut(s) 602, 1055
Vha464I CTTAAG 1 cut(s) 578
VpaK11BI GGWCC 4 cut(s) 412, 721, 1263, 1459
XagI CCTNNNNNAGG 2 cut(s) 1354, 1775
XapI RAATTY 5 cut(s) 503, 542, 847, 887, 1216
XbaI TCTAGA 1 cut(s) 482
XceI RCATGY 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 108
XmiI GTMKAC 2 cut(s) 330, 1130
XmnI GAANNNNTTC 2 cut(s) 449, 506
XspI CTAG 3 cut(s) 420, 483, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.