Rroxscaffold_5G00349530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000253
Physical Location & Seq
Forward (+)
22523966 .. 22524516
551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349530.1

Sequence Viewer

Length: 300 bp
ATGGTGAGCGTGGGTTGGATATTCACGAGTTCTTTAAGAGTGGAAGCTCCAAATCGGGTCATTGAGAATGAAGCGATTATGCCAACCATCCGTTTGAGTGACGCTTCTTCAAACCAGGCTCGTCACCAAGTGGCGGACCAATCATTAGCTACTGCGAGGTCCTTGAGCGAAAACTACGTGGATGTTGAACTTGAGGAGTGTAAGAAATCCAAGGGAAGTTTAGAGTCTCGGCTTGTGGGATCTTCCAAAGAGCTTGAAGGCTTGAAACCTATGGAATTTGACATCATAGTAGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.97

Weight (kDa)

4.78

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 1 cut(s) 275
AdeI CACNNNGTG 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 4 cut(s) 111, 188, 257, 265
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 3 cut(s) 47, 149, 253
AluI AGCT 3 cut(s) 47, 149, 253
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 136, 159
AsuHPI GGTGA 2 cut(s) 16, 116
AvaII GGWCC 2 cut(s) 136, 159
BauI CACGAG 1 cut(s) 25
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 2 cut(s) 136, 159
BmgT120I GGNCC 2 cut(s) 136, 159
BmrFI CCNGG 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 184, 212
BsaAI YACGTR 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 87, 187
BseLI CCNNNNNNNGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 239
BspACI CCGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 239
BssSI CACGAG 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 178
BstF5I GGATG 2 cut(s) 87, 187
BstKTI GATC 1 cut(s) 242
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BtsCI GGATG 2 cut(s) 87, 187
Cfr13I GGNCC 2 cut(s) 136, 159
CseI GACGC 1 cut(s) 110
CviJI RGCY 6 cut(s) 47, 119, 149, 232, 253, 261
CviKI_1 RGCY 6 cut(s) 47, 119, 149, 232, 253, 261
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
DraIII CACNNNGTG 1 cut(s) 130
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 136, 159
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaiI YATR 3 cut(s) 80, 272, 287
FokI GGATG 2 cut(s) 74, 194
HgaI GACGC 1 cut(s) 110
HinfI GANTC 1 cut(s) 224
HphI GGTGA 2 cut(s) 16, 116
Hpy188III TCNNGA 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 177
Kzo9I GATC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 2 cut(s) 101, 128
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 98, 122
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MboII GAAGA 2 cut(s) 99, 234
MflI RGATCY 1 cut(s) 239
MluCI AATT 1 cut(s) 275
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 2 cut(s) 150, 187
MseI TTAA 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
NdeII GATC 1 cut(s) 239
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 98, 122
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspPI GGNCC 2 cut(s) 136, 159
PspPPI RGGWCCY 1 cut(s) 159
PsuI RGATCY 1 cut(s) 239
SaqAI TTAA 1 cut(s) 35
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 2 cut(s) 136, 159
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 116
SetI ASST 6 cut(s) 49, 151, 161, 180, 255, 271
SinI GGWCC 2 cut(s) 136, 159
SmlI CTYRAG 2 cut(s) 163, 191
SmoI CTYRAG 2 cut(s) 163, 191
Sse9I AATT 1 cut(s) 275
SsiI CCGC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 180
TasI AATT 1 cut(s) 275
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseFI GTSAC 2 cut(s) 98, 122
Tsp45I GTSAC 2 cut(s) 98, 122
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 136, 159
XapI RAATTY 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.