Rh2DG529400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000253
Physical Location & Seq
Reverse (-)
75531881 .. 75532165
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG529400.1

Sequence Viewer

Length: 285 bp
ATGGATGTTGAACTTGAGGTGTGTAAGAAATCCAAGGGAAGTTTAGAGTCTCAGCTTGTGGGATCTTCCAAAGAGCTTGAAGCCTTGAAAGCCACGGAATCTGATATCATAGCAAATGAGCAGCGTGTTCGGAAGAGGCGATCAGAATATAATGCTAAGAGACAATCTCTTGAAGAAACTCTGCAGGAACTGAAGGATTCCTTGAAAGAGCATGATGAACGAGGCCAGAAGCTTCAAGAAGACAGAGCTTCTTATATGGCGGAGAAACTTCCTGAGATTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.87

Weight (kDa)

5.2

Isoelectric Point (pI)

75.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 212
AgsI TTSAA 6 cut(s) 11, 80, 88, 173, 205, 236
AluBI AGCT 4 cut(s) 55, 76, 232, 248
AluI AGCT 4 cut(s) 55, 76, 232, 248
Alw26I GTCTC 2 cut(s) 54, 154
AlwI GGATC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcoDI GTCTC 2 cut(s) 54, 154
BfmI CTRYAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 246
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpuEI CTTGAG 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 33, 93
BseDI CCNNGG 2 cut(s) 33, 93
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 2 cut(s) 65, 264
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 54, 154
BsnI GGCC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 62, 140
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 64, 265
BspMAI CTGCAG 1 cut(s) 186
BspPI GGATC 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 33, 93
BssMI GATC 2 cut(s) 62, 140
BssT1I CCWWGG 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 128
BstDEI CTNAG 3 cut(s) 51, 156, 273
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 65, 143
BstMAI GTCTC 2 cut(s) 54, 154
BstMBI GATC 2 cut(s) 62, 140
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 190
CviAII CATG 1 cut(s) 212
CviJI RGCY 7 cut(s) 55, 76, 83, 92, 225, 232, 248
CviKI_1 RGCY 7 cut(s) 55, 76, 83, 92, 225, 232, 248
DdeI CTNAG 3 cut(s) 51, 156, 273
DpnI GATC 2 cut(s) 64, 142
DpnII GATC 2 cut(s) 62, 140
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 33
Eco32I GATATC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 212
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 215
FaiI YATR 5 cut(s) 110, 150, 213, 255, 257
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 122
HaeIII GGCC 1 cut(s) 225
Hin1II CATG 1 cut(s) 215
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 3 cut(s) 47, 98, 197
Hpy188I TCNGA 3 cut(s) 103, 132, 145
Hpy188III TCNNGA 3 cut(s) 170, 236, 272
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 51, 156, 273
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 2 cut(s) 62, 140
LpnPI CCDG 2 cut(s) 170, 239
Lsp1109I GCAGC 1 cut(s) 133
MalI GATC 2 cut(s) 64, 142
MboI GATC 2 cut(s) 62, 140
MboII GAAGA 4 cut(s) 57, 145, 185, 251
MflI RGATCY 1 cut(s) 62
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 3 cut(s) 10, 129, 215
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 62, 140
NlaIII CATG 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PfeI GAWTC 2 cut(s) 98, 197
PkrI GCNGC 1 cut(s) 123
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 62
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 2 cut(s) 62, 140
SchI GAGTC 1 cut(s) 56
SetI ASST 5 cut(s) 21, 57, 78, 234, 250
SfcI CTRYAG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SsiI CCGC 1 cut(s) 260
StyI CCWWGG 1 cut(s) 33
TfiI GAWTC 2 cut(s) 98, 197
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.