Rmu_sc0002281.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002281.1
OG0000253
Physical Location & Seq
Reverse (-)
103533 .. 104234
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002281.1_g000026.1.cds

Sequence Viewer

Length: 702 bp
atgccaactgtagaggatgtagggaactttctatcagccatagtcgatcctgggctggctgtattcacgaggaactatcttattggtcatgtgagtgacatttttgtgaaagtttcttcctcaaagacaccagaagatttattggcccatcgtgaagaaatccaattagctttaggtatgctccatcccgtcattgagtctttgaagtctggtaaagatctgttcgagaaatttacctctaccattagagatatgctagcggcagcagtggattcttcgagaactattgcacttctgaaagagagcacaggagttgatgttgagtttgctgataacctgatttctgactatgaggcgtgtatgaaagtcaaacaggacttagactcccggttggcagattcttccaagaagctccaagacttgcaagctacagaacttgatatcaaggctaacgaggagcgggttaggaagcgtcgtcggaaacatgacagtcagaaggcctctattgagaacaccataaagttgctgaaggaatccataaaagagcaggaggatcaagggcggcaacttcttaaagagaagtcagactgtgtaaaggacaagcttccagagatcgaacaggctatatcttcaagcaagttggagcgagaaaaatatcagaagtcatttgattcttttatttccctttttccaactgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.26

Weight (kDa)

5.56

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 460
AciI CCGC 3 cut(s) 260, 460, 562
AclWI GGATC 2 cut(s) 41, 561
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 548
AgsI TTSAA 2 cut(s) 205, 633
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 4 cut(s) 170, 412, 428, 604
AluI AGCT 4 cut(s) 170, 412, 428, 604
Alw21I GWGCWC 1 cut(s) 308
AlwI GGATC 2 cut(s) 41, 561
AoxI GGCC 2 cut(s) 144, 498
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 388
AsuNHI GCTAGC 1 cut(s) 256
BauI CACGAG 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 1 cut(s) 275
BccI CCATC 2 cut(s) 156, 192
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 1 cut(s) 388
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 2 cut(s) 9, 429
BglII AGATCT 1 cut(s) 217
BisI GCNGC 3 cut(s) 261, 264, 563
BlsI GCNGC 3 cut(s) 262, 265, 564
Bme1390I CCNGG 2 cut(s) 51, 388
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 51, 388
BmtI GCTAGC 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 4 cut(s) 303, 333, 368, 398
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 22, 184
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 275
BshFI GGCC 2 cut(s) 146, 500
BsiHKAI GWGCWC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 388
BsnI GGCC 2 cut(s) 146, 500
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 4 cut(s) 46, 217, 553, 612
BspACI CCGC 3 cut(s) 260, 460, 562
BspANI GGCC 2 cut(s) 146, 500
BspOI GCTAGC 1 cut(s) 260
BspPI GGATC 2 cut(s) 41, 561
BsrBI CCGCTC 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 4 cut(s) 46, 217, 553, 612
BssSI CACGAG 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 10, 491, 590
BstC8I GCNNGC 3 cut(s) 57, 258, 426
BstDEI CTNAG 1 cut(s) 379
BstF5I GGATG 2 cut(s) 22, 184
BstKTI GATC 4 cut(s) 49, 220, 556, 615
BstMBI GATC 4 cut(s) 46, 217, 553, 612
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 49, 386
BstSFI CTRYAG 2 cut(s) 9, 429
BstV1I GCAGC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 2 cut(s) 146, 500
BtsCI GGATG 2 cut(s) 22, 184
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 3 cut(s) 57, 258, 426
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 1 cut(s) 461
CviAII CATG 2 cut(s) 89, 485
DdeI CTNAG 1 cut(s) 379
DpnI GATC 4 cut(s) 48, 219, 555, 614
DpnII GATC 4 cut(s) 46, 217, 553, 612
Eco147I AGGCCT 1 cut(s) 500
Eco32I GATATC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 49
EcoRV GATATC 1 cut(s) 442
FaeI CATG 2 cut(s) 92, 488
FatI CATG 2 cut(s) 88, 484
FauI CCCGC 1 cut(s) 453
Fnu4HI GCNGC 3 cut(s) 261, 264, 563
FokI GGATG 2 cut(s) 29, 171
Fsp4HI GCNGC 3 cut(s) 261, 264, 563
FspBI CTAG 1 cut(s) 257
GluI GCNGC 3 cut(s) 261, 264, 563
HaeIII GGCC 2 cut(s) 146, 500
HapII CCGG 1 cut(s) 388
HgaI GACGC 1 cut(s) 461
Hin1II CATG 2 cut(s) 92, 488
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 6 cut(s) 197, 272, 383, 398, 533, 671
HpaII CCGG 1 cut(s) 388
Hpy188I TCNGA 6 cut(s) 297, 346, 480, 495, 586, 660
Hpy188III TCNNGA 5 cut(s) 67, 152, 226, 279, 608
Hpy99I CGWCG 2 cut(s) 477, 480
HpyAV CCTTC 2 cut(s) 490, 523
HpyCH4III ACNGT 3 cut(s) 10, 491, 590
HpyCH4V TGCA 3 cut(s) 290, 424, 698
HpyF3I CTNAG 1 cut(s) 379
Hsp92II CATG 2 cut(s) 92, 488
Kzo9I GATC 4 cut(s) 46, 217, 553, 612
LmnI GCTCC 4 cut(s) 186, 417, 457, 643
Lsp1109I GCAGC 1 cut(s) 275
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 95
MalI GATC 4 cut(s) 48, 219, 555, 614
MbiI CCGCTC 1 cut(s) 460
MboI GATC 4 cut(s) 46, 217, 553, 612
MboII GAAGA 6 cut(s) 108, 146, 167, 267, 393, 621
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 2 cut(s) 164, 230
MlyI GAGTC 2 cut(s) 206, 377
MmeI TCCRAC 2 cut(s) 458, 621
MnlI CCTC 8 cut(s) 7, 63, 130, 247, 346, 448, 511, 544
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 2 cut(s) 93, 104
MspI CCGG 1 cut(s) 388
MspR9I CCNGG 2 cut(s) 51, 388
MvaI CCWGG 1 cut(s) 51
NciI CCSGG 1 cut(s) 388
NdeII GATC 4 cut(s) 46, 217, 553, 612
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 2 cut(s) 92, 488
NmuCI GTSAC 1 cut(s) 95
PceI AGGCCT 1 cut(s) 500
PfeI GAWTC 4 cut(s) 272, 398, 533, 671
PkrI GCNGC 3 cut(s) 262, 265, 564
PleI GAGTC 2 cut(s) 205, 377
PpsI GAGTC 2 cut(s) 205, 377
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 1 cut(s) 217
RseI CAYNNNNRTG 2 cut(s) 93, 104
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 3 cut(s) 261, 264, 563
Sau3AI GATC 4 cut(s) 46, 217, 553, 612
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 2 cut(s) 206, 377
ScrFI CCNGG 2 cut(s) 51, 388
SduI GDGCHC 1 cut(s) 308
SetI ASST 7 cut(s) 172, 178, 239, 339, 414, 430, 606
SfcI CTRYAG 2 cut(s) 9, 429
SmiMI CAYNNNNRTG 2 cut(s) 93, 104
Sse9I AATT 2 cut(s) 164, 230
SseBI AGGCCT 1 cut(s) 500
SsiI CCGC 3 cut(s) 260, 460, 562
SspMI CTAG 1 cut(s) 257
StuI AGGCCT 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 49, 386
TaaI ACNGT 3 cut(s) 10, 491, 590
TaqI TCGA 4 cut(s) 45, 225, 278, 615
TasI AATT 2 cut(s) 164, 230
TauI GCSGC 2 cut(s) 263, 565
TfiI GAWTC 4 cut(s) 272, 398, 533, 671
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 377
TspRI CASTG 1 cut(s) 273
XapI RAATTY 1 cut(s) 230
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.