Rorug04G0157900

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000253
Physical Location & Seq
Forward (+)
27541667 .. 27544231
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0157900.1

Sequence Viewer

Length: 858 bp
ATGGTGTCCACCAGAAGAACGTCGGCCTCTGCAACGCCGCCCCAACCTACCCGAATCCTCAAAACCCCATTTTCTACCCCCAAAACCATCTCTGCCTCCGTCAAATCGGTATTATTGGATGATTGGTGGCTGGTCAAGGCTCAAGGAAAGGGCTTGGCTGTGGAAGGCTTGGCTAAAACACAGAGACCTGCAATAAGAACTTTTAGCTCGGCAGCAATTTCAAAGAGACATACCACCACAGTTCTTGAGACAACAGATGGCATCATTGTTACACTCTGTGGTTTCTTAAATATCTCCCGCACAGGTCAAAATGGTTTTCCGCCCAAGGTATATAATCGCTATCTGCTTGGATTTCCATATGACTGGGAGGAGCATGCAGCTGGTTTATTGGTTCAAGGTTCTACTGACAAAAGTGCCACAGCCAGAAATTCATCGTCTCAGAAGTTCAACATGTTTTTAGAAGACAGTGAAAGTAATCCGTTACCATTTTCTATAACTGATGTCCCAGCGACAGTTGCACGTGATTTTATAATGTCTTGTGTTGGAGATTCTGAACAATTGAAGACCATATTCGGTGATATACTGACAACATCCGGGGACAATGTTCTTGGGGATACCACTCCGCAAATCAACTCAAACATGGAAGATAGTCATCCAATTGAAAATGTGAAATCTGGACGAAATGAAACACCCACCATGGCTAAGAAGGTTCGGATTGATGATGACAAAAACAAGACTACAGACACATGTTTAAAAGGCAGCCAGAAATCTAAGAAGGGAATGTGTTCCAGAAGAAACCAGACCAGCACGAAATCTGTACCCACAAGATCAAGCGCCAGGCTGAAGAATTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

285

Amino Acids

31.12

Weight (kDa)

9.62

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 37 - 124 8e-25 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 530
Acc36I ACCTGC 1 cut(s) 196
AciI CCGC 4 cut(s) 38, 298, 320, 623
AcsI RAATTY 2 cut(s) 427, 847
AcvI CACGTG 1 cut(s) 521
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 1 cut(s) 819
AflIII ACRYGT 2 cut(s) 450, 746
AgsI TTSAA 6 cut(s) 222, 395, 448, 562, 662, 853
AjnI CCWGG 1 cut(s) 836
AluBI AGCT 2 cut(s) 207, 380
AluI AGCT 2 cut(s) 207, 380
Alw26I GTCTC 4 cut(s) 178, 220, 242, 441
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 212, 377, 759
ApoI RAATTY 2 cut(s) 427, 847
Asp700I GAANNNNTTC 1 cut(s) 784
AspLEI GCGC 1 cut(s) 836
AsuC2I CCSGG 1 cut(s) 595
AsuHPI GGTGA 1 cut(s) 587
BbrPI CACGTG 1 cut(s) 521
BbsI GAAGAC 2 cut(s) 468, 569
BbvI GCAGC 3 cut(s) 224, 389, 771
BccI CCATC 2 cut(s) 95, 251
BciT130I CCWGG 1 cut(s) 838
BciVI GTATCC 1 cut(s) 607
BcnI CCSGG 1 cut(s) 595
BcoDI GTCTC 4 cut(s) 178, 220, 242, 441
BfmI CTRYAG 1 cut(s) 738
BfoI RGCGCY 1 cut(s) 837
BfuAI ACCTGC 1 cut(s) 196
BfuI GTATCC 1 cut(s) 607
BisI GCNGC 4 cut(s) 38, 213, 378, 760
BlsI GCNGC 4 cut(s) 39, 214, 379, 761
Bme1390I CCNGG 2 cut(s) 595, 838
BmrFI CCNGG 2 cut(s) 595, 838
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 2 cut(s) 468, 569
BpuEI CTTGAG 2 cut(s) 126, 266
BpuMI CCSGG 1 cut(s) 595
BsaAI YACGTR 1 cut(s) 521
BsaBI GATNNNNATC 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 324, 594, 696
Bse1I ACTGG 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 838
BseDI CCNNGG 3 cut(s) 324, 594, 696
BseGI GGATG 3 cut(s) 124, 590, 652
BseJI GATNNNNATC 1 cut(s) 651
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 3 cut(s) 224, 389, 771
BseYI CCCAGC 1 cut(s) 505
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 2 cut(s) 488, 611
BsmAI GTCTC 4 cut(s) 178, 220, 242, 441
BsmBI CGTCTC 1 cut(s) 441
BsmFI GGGAC 2 cut(s) 488, 611
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 827
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 4 cut(s) 38, 298, 320, 623
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 451
BspMI ACCTGC 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 324, 594, 696
BssMI GATC 1 cut(s) 827
BssT1I CCWWGG 2 cut(s) 324, 696
Bst2UI CCWGG 1 cut(s) 838
Bst4CI ACNGT 3 cut(s) 241, 467, 514
BstBAI YACGTR 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 3 cut(s) 438, 702, 771
BstDSI CCRYGG 1 cut(s) 696
BstF5I GGATG 3 cut(s) 124, 590, 652
BstH2I RGCGCY 1 cut(s) 837
BstHHI GCGC 1 cut(s) 836
BstKTI GATC 1 cut(s) 830
BstMAI GTCTC 4 cut(s) 178, 220, 242, 441
BstMBI GATC 1 cut(s) 827
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 1 cut(s) 838
BstNSI RCATGY 3 cut(s) 377, 454, 750
BstSCI CCNGG 2 cut(s) 593, 836
BstSFI CTRYAG 1 cut(s) 738
BstV1I GCAGC 3 cut(s) 224, 389, 771
BstV2I GAAGAC 2 cut(s) 468, 569
BstXI CCANNNNNNTGG 1 cut(s) 363
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 696
BtsCI GGATG 3 cut(s) 124, 590, 652
BtsIMutI CAGTG 1 cut(s) 472
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 375
CfoI GCGC 1 cut(s) 836
Csp6I GTAC 1 cut(s) 818
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 5 cut(s) 374, 451, 640, 697, 747
CviQI GTAC 1 cut(s) 818
DdeI CTNAG 3 cut(s) 438, 702, 771
DpnI GATC 1 cut(s) 829
DpnII GATC 1 cut(s) 827
DraI TTTAAA 1 cut(s) 753
DraIII CACNNNGTG 1 cut(s) 278
EciI GGCGGA 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 324, 696
Eco31I GGTCTC 1 cut(s) 178
Eco72I CACGTG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 836
EcoT14I CCWWGG 2 cut(s) 324, 696
ErhI CCWWGG 2 cut(s) 324, 696
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 5 cut(s) 377, 454, 643, 700, 750
FaqI GGGAC 2 cut(s) 488, 611
FatI CATG 5 cut(s) 373, 450, 639, 696, 746
FauI CCCGC 1 cut(s) 305
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 4 cut(s) 38, 213, 378, 760
FokI GGATG 3 cut(s) 131, 577, 639
Fsp4HI GCNGC 4 cut(s) 38, 213, 378, 760
GlaI GCGC 1 cut(s) 835
GluI GCNGC 4 cut(s) 38, 213, 378, 760
GsaI CCCAGC 1 cut(s) 509
HaeII RGCGCY 1 cut(s) 837
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 594
HhaI GCGC 1 cut(s) 836
Hin1II CATG 5 cut(s) 377, 454, 643, 700, 750
Hin6I GCGC 1 cut(s) 834
HinP1I GCGC 1 cut(s) 834
HinfI GANTC 2 cut(s) 54, 548
HpaII CCGG 1 cut(s) 594
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 441, 553, 714
Hpy188III TCNNGA 3 cut(s) 245, 675, 789
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 158, 700, 769
HpyCH4III ACNGT 3 cut(s) 241, 467, 514
HpyCH4IV ACGT 2 cut(s) 20, 520
HpyCH4V TGCA 4 cut(s) 32, 191, 377, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 3 cut(s) 438, 702, 771
HpySE526I ACGT 2 cut(s) 20, 520
Hsp92II CATG 5 cut(s) 377, 454, 643, 700, 750
HspAI GCGC 1 cut(s) 834
Kzo9I GATC 1 cut(s) 827
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 3 cut(s) 224, 389, 771
LweI GCATC 1 cut(s) 270
MaeII ACGT 2 cut(s) 20, 520
MaeIII GTNAC 2 cut(s) 268, 480
MalI GATC 1 cut(s) 829
MboI GATC 1 cut(s) 827
MboII GAAGA 6 cut(s) 27, 473, 574, 656, 804, 856
MfeI CAATTG 2 cut(s) 557, 657
MluCI AATT 5 cut(s) 216, 427, 557, 657, 847
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 4 cut(s) 37, 68, 106, 361
MroXI GAANNNNTTC 1 cut(s) 784
MseI TTAA 2 cut(s) 287, 752
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 2 cut(s) 595, 838
MunI CAATTG 2 cut(s) 557, 657
MvaI CCWGG 1 cut(s) 838
MwoI GCNNNNNNNGC 1 cut(s) 515
NciI CCSGG 1 cut(s) 595
NcoI CCATGG 1 cut(s) 696
NdeI CATATG 1 cut(s) 358
NdeII GATC 1 cut(s) 827
NlaIII CATG 5 cut(s) 377, 454, 643, 700, 750
NmeAIII GCCGAG 1 cut(s) 188
NspI RCATGY 3 cut(s) 377, 454, 750
PaeI GCATGC 1 cut(s) 377
PciI ACATGT 2 cut(s) 450, 746
PdmI GAANNNNTTC 1 cut(s) 784
PfeI GAWTC 2 cut(s) 54, 548
PkrI GCNGC 4 cut(s) 39, 214, 379, 761
PmaCI CACGTG 1 cut(s) 521
PmlI CACGTG 1 cut(s) 521
Ppu21I YACGTR 1 cut(s) 521
PscI ACATGT 2 cut(s) 450, 746
PsiI TTATAA 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 836
PspCI CACGTG 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 1 cut(s) 836
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 819
RsaNI GTAC 1 cut(s) 818
SaqAI TTAA 2 cut(s) 287, 752
SatI GCNGC 4 cut(s) 38, 213, 378, 760
Sau3AI GATC 1 cut(s) 827
ScrFI CCNGG 2 cut(s) 595, 838
SfaNI GCATC 1 cut(s) 270
SfcI CTRYAG 1 cut(s) 738
SmlI CTYRAG 2 cut(s) 141, 245
SmoI CTYRAG 2 cut(s) 141, 245
SphI GCATGC 1 cut(s) 377
Sse9I AATT 5 cut(s) 216, 427, 557, 657, 847
SsiI CCGC 4 cut(s) 38, 298, 320, 623
StyD4I CCNGG 2 cut(s) 593, 836
StyI CCWWGG 2 cut(s) 324, 696
TaaI ACNGT 3 cut(s) 241, 467, 514
TaiI ACGT 2 cut(s) 23, 523
TasI AATT 5 cut(s) 216, 427, 557, 657, 847
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 54, 548
Tru1I TTAA 2 cut(s) 287, 752
Tru9I TTAA 2 cut(s) 287, 752
TscAI CASTG 1 cut(s) 472
TseI GCWGC 3 cut(s) 212, 377, 759
TspDTI ATGAA 2 cut(s) 420, 699
TspGWI ACGGA 2 cut(s) 88, 468
TspRI CASTG 1 cut(s) 472
XapI RAATTY 2 cut(s) 427, 847
XceI RCATGY 3 cut(s) 377, 454, 750
XmnI GAANNNNTTC 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.