Rmu_sc0001016.1_g000053

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001016.1
OG0000253
Physical Location & Seq
Reverse (-)
222791 .. 225559
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001016.1_g000053.1.cds

Sequence Viewer

Length: 2769 bp
atggatgctcaaggatttctttgttccgagcgagccccaaagaagcaagggaaagatcttgactacggtcctgaataccgaaggtcgttacctttgaactcgattagtctcacggtgtcccttgagagtaggcctacctgggttaccactgccaacttgaattctagtcaccttagattcgatcctcatgccaaagacggtgttataaagaatgttcgctatttcggtgctcattttgatgcccacacgttgatgaaggcaaacaacgaagaggacggtgacaacaagttcccagttggagaagatttttacccagcccttcatagaatgctgaagtgtaagaaagactggggtgaagacttctgttttcgtggtcgggccgtatttgagcatggcattctagaatggacggaaaccaccctaactgaatttgaagagacattagacaaagctggtattttcggtgcagttgccgtttcccgttatccgtttgagtattgcagtaatgtgtggagggcattctgtgagctgtgggggcctttaacaaacaactttcaccatgcagatggggaaatgagcatctctttgcatgatttgaatgttattggaggattgccggtttcaggagaaccatatgaagaattcattcctccaaataaagatttggtaaaggttgaattatacgattctacggttgcagagctcttgaggatttatacctatctgggtgtagcttataagagcagatatgtttactggccatggtggatcgaacatttttatcatggggagataatttacggagcctatggtgaatgtaagaattctggggttccgaaactgagagaaccaaagcttcagttgaagatttcaaagcaaggaagactggctgcattcctcgcgttctggcttagcaggttcgttctcccctccaacagtaagaagataaggcctgagattttctatatggcctctttaatggcacagagcatcagggtatctcttgcgcccacagtactgggttatgtgtaccatggtcttggtgagatggctactcactctgctggtcctggctcttccaactcttgtttgcctatccactacgtcattggctggcttggagaatattttccttatctgtactcatcacgttctgataaagaattcccaggagggtatcctcgtttgtccaggtatgcaggtgttcaaggcaggagtttaagcatcacagaggctcgtatggttttcaggaccaacaaatctgtcgtgcatcgccctatctctgtagcctgtgaaaaagaccgttttttgcttgatgacgacaaattgcctgatgtgttatttgaggtcctcatctgtatgtgttctgcagtgctgccagtgcgagttggcgagagtcttttccttgagccctattatccaaacaggtttgctcgtcaatttggtattgatcagagtgttccctcttacaaactatcctttagtgtttctaaaaggcagcaatgtgctgttgaggatctgctgagggcacagactatcctgtataggaagaacactacctctcgtttctttatcccacgctcttctcgttctggacagtgtacatggtggtactgcaggtggtggtcaagagcttgtactccttacttggggttatcggtgtccaaaaccttcatgactttgaataagcgccttcctgaaaagccacaacgtgttttcgtcgtgcagaacttgagagaaatttctactggtttgaaacaagaggttaaaatctcagaggtggaaaagtctcttgggaaatcttcaagaaaggctcctcgaaaatctcgtgatggagcttcttgttctaagaccagcagggctcgtcccacagatgaatgtggtgggcacaaaagagttaggcttgaaaaggtagttgaagagactgtcgttatcccagtgaagtcttcttcaaatggtgagcgtgagttggatgttcacagtcctttgagagtggaagctctaaatccggtcattgagaatgaagtggttatgccaaccatctgtttgagtgaagcttcttcaaaccaggttctgtcaccattgtcaaatctggagaactccatatctaatttgcttggttcagaactgccgtccttcaagaagaattacctcattgctcaagttgtagacatttacgctaaagtttcttcatcttcgacgccaaaggagctgttagtccatgttttggacattagatcaagtcatgacatgcttcgccctgcaattaagcctctaaaagctggaaagctacaacttgaagcgttcgtaactgctattgagaagatgttagaggtggcagaccagtcattaaatactactgaggtccttgagcagagaactaccatggatgttgaacttgaggagtgtaagaaatccaagggaagtttagagtctcagcttgtgggatcttccaaagagcttgaagccttgaaagccacggaatctgatatcatagcagatgagcagcgtgttcagaagaggcgatcaaaatataatgctaagagacaatctcttgaagacactctacaagaactgaaggattccctgaaagagcatgatgaaagaggccagaagcttcaagaagacagagctgcttatatggcggagaaactccctgagattgagcaggcttcggcttcgtataagttggaaacagaggcgtatcagagcctatttgattctttgttcccgttattccaggtgtgcaccacctcagtacagacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

922

Amino Acids

104.65

Weight (kDa)

8.2

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 206, 738
AarI CACCTGC 2 cut(s) 1190, 1608
Acc36I ACCTGC 3 cut(s) 906, 1190, 1608
AccB7I CCANNNNNTGG 1 cut(s) 2227
AccI GTMKAC 1 cut(s) 2169
AccII CGCG 1 cut(s) 902
AciI CCGC 1 cut(s) 2645
AclWI GGATC 4 cut(s) 176, 776, 1524, 2455
AcoI YGGCCR 1 cut(s) 758
AcsI RAATTY 6 cut(s) 160, 428, 641, 823, 1163, 1740
AcuI CTGAAG 3 cut(s) 353, 842, 2597
AcyI GRCGYC 1 cut(s) 2201
AdeI CACNNNGTG 1 cut(s) 1712
AfaI GTAC 7 cut(s) 1017, 1031, 1142, 1603, 1613, 1639, 2760
AfiI CCNNNNNNNGG 3 cut(s) 623, 1649, 2227
AflIII ACRYGT 2 cut(s) 246, 1711
AjnI CCWGG 6 cut(s) 137, 1069, 1168, 1190, 2067, 2739
AjuI GAANNNNNNNTTGG 2 cut(s) 1776, 1808
Alw21I GWGCWC 3 cut(s) 232, 705, 2750
Alw26I GTCTC 6 cut(s) 113, 431, 1794, 1916, 2439, 2539
Alw44I GTGCAC 1 cut(s) 2746
AlwI GGATC 4 cut(s) 176, 776, 1524, 2455
AlwNI CAGNNNCTG 1 cut(s) 2074
AoxI GGCC 7 cut(s) 131, 378, 536, 758, 950, 969, 2608
ApaLI GTGCAC 1 cut(s) 2746
ApeKI GCWGC 5 cut(s) 890, 1375, 1498, 2506, 2633
ApoI RAATTY 6 cut(s) 160, 428, 641, 823, 1163, 1740
Asp700I GAANNNNTTC 2 cut(s) 645, 1128
AspLEI GCGC 2 cut(s) 1009, 1692
AspS9I GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
AsuHPI GGTGA 8 cut(s) 161, 290, 365, 548, 824, 1055, 1970, 2070
AvaII GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
BaeGI GKGCMC 3 cut(s) 1531, 1890, 2750
BalI TGGCCA 1 cut(s) 760
BanII GRGCYC 4 cut(s) 37, 705, 1413, 1864
BarI GAAGNNNNNNTAC 2 cut(s) 2550, 2582
BauI CACGAG 1 cut(s) 1827
BbsI GAAGAC 5 cut(s) 363, 889, 1938, 2565, 2631
Bbv12I GWGCWC 3 cut(s) 232, 705, 2750
BbvCI CCTCAGC 1 cut(s) 1523
BbvI GCAGC 5 cut(s) 877, 1362, 1510, 2518, 2620
BccI CCATC 4 cut(s) 560, 1042, 1826, 2048
BceAI ACGGC 3 cut(s) 365, 458, 2116
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 6 cut(s) 139, 1071, 1170, 1192, 2069, 2741
BciVI GTATCC 1 cut(s) 1188
BclI TGATCA 1 cut(s) 1450
BcoDI GTCTC 6 cut(s) 113, 431, 1794, 1916, 2439, 2539
BfaI CTAG 2 cut(s) 165, 401
BfmI CTRYAG 3 cut(s) 1284, 1368, 1615
BfoI RGCGCY 1 cut(s) 1693
BfuAI ACCTGC 3 cut(s) 906, 1190, 1608
BfuI GTATCC 1 cut(s) 1188
BglII AGATCT 1 cut(s) 55
BisI GCNGC 5 cut(s) 891, 1376, 1499, 2507, 2634
BlpI GCTNAGC 1 cut(s) 911
BlsI GCNGC 5 cut(s) 892, 1377, 1500, 2508, 2635
BmcAI AGTACT 1 cut(s) 1017
Bme1390I CCNGG 6 cut(s) 139, 1071, 1170, 1192, 2069, 2741
Bme18I GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
BmgT120I GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
BmiI GGNNCC 4 cut(s) 537, 805, 834, 1815
BmrFI CCNGG 6 cut(s) 139, 1071, 1170, 1192, 2069, 2741
BmrI ACTGGG 4 cut(s) 287, 358, 1028, 1931
BmsI GCATC 5 cut(s) 229, 588, 999, 1233, 1279
BmuI ACTGGG 4 cut(s) 287, 358, 1028, 1931
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 5 cut(s) 363, 889, 1938, 2565, 2631
BplI GAGNNNNNCTC 2 cut(s) 2536, 2568
BpmI CTGGAG 1 cut(s) 2114
Bpu10I CCTNAGC 1 cut(s) 1523
Bpu1102I GCTNAGC 1 cut(s) 911
BpuEI CTTGAG 7 cut(s) 143, 727, 1427, 1753, 2145, 2390, 2420
BsaHI GRCGYC 1 cut(s) 2201
BsaJI CCNNGG 7 cut(s) 138, 761, 1033, 1168, 2385, 2418, 2478
BsaWI WCCGGW 1 cut(s) 2008
Bsc4I CCNNNNNNNGG 3 cut(s) 623, 1649, 2227
Bse118I RCCGGY 1 cut(s) 616
Bse1I ACTGG 9 cut(s) 293, 353, 761, 891, 1023, 1379, 1753, 1937, 2344
Bse3DI GCAATG 2 cut(s) 1508, 2154
BseBI CCWGG 6 cut(s) 139, 1071, 1170, 1192, 2069, 2741
BseDI CCNNGG 7 cut(s) 138, 761, 1033, 1168, 2385, 2418, 2478
BseGI GGATG 3 cut(s) 10, 1978, 2395
BseLI CCNNNNNNNGG 3 cut(s) 623, 1649, 2227
BseMI GCAATG 2 cut(s) 1508, 2154
BseMII CTCAG 8 cut(s) 833, 945, 1514, 1788, 2352, 2450, 2649, 2769
BseNI ACTGG 9 cut(s) 293, 353, 761, 891, 1023, 1379, 1753, 1937, 2344
BseRI GAGGAG 2 cut(s) 1806, 2417
BseSI GKGCMC 3 cut(s) 1531, 1890, 2750
BseXI GCAGC 5 cut(s) 877, 1362, 1510, 2518, 2620
BseYI CCCAGC 1 cut(s) 313
BsgI GTGCAG 2 cut(s) 486, 1745
Bsh1236I CGCG 1 cut(s) 902
BshFI GGCC 7 cut(s) 133, 380, 538, 760, 952, 971, 2610
BsiHKAI GWGCWC 3 cut(s) 232, 705, 2750
BsiSI CCGG 2 cut(s) 617, 2009
BslFI GGGAC 2 cut(s) 103, 1851
BslI CCNNNNNNNGG 3 cut(s) 623, 1649, 2227
BsmAI GTCTC 6 cut(s) 113, 431, 1794, 1916, 2439, 2539
BsmFI GGGAC 2 cut(s) 103, 1851
BsmI GAATGC 4 cut(s) 333, 396, 518, 893
BsnI GGCC 7 cut(s) 133, 380, 538, 760, 952, 971, 2610
Bsp1286I GDGCHC 8 cut(s) 37, 232, 705, 1413, 1531, 1864, 1890, 2750
Bsp1407I TGTACA 1 cut(s) 1601
Bsp143I GATC 8 cut(s) 55, 181, 768, 1450, 1516, 2237, 2447, 2525
Bsp1720I GCTNAGC 1 cut(s) 911
Bsp19I CCATGG 3 cut(s) 761, 1033, 2385
BspACI CCGC 1 cut(s) 2645
BspANI GGCC 7 cut(s) 133, 380, 538, 760, 952, 971, 2610
BspCNI CTCAG 8 cut(s) 834, 946, 1515, 1787, 2353, 2449, 2650, 2768
BspFNI CGCG 1 cut(s) 902
BspHI TCATGA 2 cut(s) 1674, 2245
BspLI GGNNCC 4 cut(s) 537, 805, 834, 1815
BspMAI CTGCAG 2 cut(s) 1372, 1619
BspMI ACCTGC 3 cut(s) 906, 1190, 1608
BspPI GGATC 4 cut(s) 176, 776, 1524, 2455
BspQI GCTCTTC 2 cut(s) 1081, 1588
BsrDI GCAATG 2 cut(s) 1508, 2154
BsrFI RCCGGY 1 cut(s) 616
BsrGI TGTACA 1 cut(s) 1601
BsrI ACTGG 9 cut(s) 293, 353, 761, 891, 1023, 1379, 1753, 1937, 2344
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 7 cut(s) 138, 761, 1033, 1168, 2385, 2418, 2478
BssMI GATC 8 cut(s) 55, 181, 768, 1450, 1516, 2237, 2447, 2525
BssNI GRCGYC 1 cut(s) 2201
BssSI CACGAG 1 cut(s) 1827
BssT1I CCWWGG 4 cut(s) 761, 1033, 2385, 2418
Bst2BI CACGAG 1 cut(s) 1827
Bst2UI CCWGG 6 cut(s) 139, 1071, 1170, 1192, 2069, 2741
Bst6I CTCTTC 6 cut(s) 264, 429, 1081, 1588, 1914, 2513
BstACI GRCGYC 1 cut(s) 2201
BstAUI TGTACA 1 cut(s) 1601
BstC8I GCNNGC 3 cut(s) 33, 1115, 2670
BstDSI CCRYGG 4 cut(s) 761, 1033, 2385, 2478
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 3 cut(s) 10, 1978, 2395
BstFNI CGCG 1 cut(s) 902
BstH2I RGCGCY 1 cut(s) 1693
BstHHI GCGC 2 cut(s) 1009, 1692
BstKTI GATC 8 cut(s) 58, 184, 771, 1453, 1519, 2240, 2450, 2528
BstMAI GTCTC 6 cut(s) 113, 431, 1794, 1916, 2439, 2539
BstMBI GATC 8 cut(s) 55, 181, 768, 1450, 1516, 2237, 2447, 2525
BstMWI GCNNNNNNNGC 6 cut(s) 535, 899, 1381, 2209, 2474, 2642
BstNI CCWGG 6 cut(s) 139, 1071, 1170, 1192, 2069, 2741
BstNSI RCATGY 1 cut(s) 2254
BstPAI GACNNNNGTC 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 6 cut(s) 137, 1069, 1168, 1190, 2067, 2739
BstSFI CTRYAG 3 cut(s) 1284, 1368, 1615
BstSLI GKGCMC 3 cut(s) 1531, 1890, 2750
BstUI CGCG 1 cut(s) 902
BstV1I GCAGC 5 cut(s) 877, 1362, 1510, 2518, 2620
BstV2I GAAGAC 5 cut(s) 363, 889, 1938, 2565, 2631
BstX2I RGATCY 3 cut(s) 55, 1516, 2447
BstXI CCANNNNNNTGG 3 cut(s) 566, 1018, 1040
BstYI RGATCY 3 cut(s) 55, 1516, 2447
BsuI GTATCC 1 cut(s) 1188
BsuRI GGCC 7 cut(s) 133, 380, 538, 760, 952, 971, 2610
BtgI CCRYGG 4 cut(s) 761, 1033, 2385, 2478
BtgZI GCGATG 1 cut(s) 1256
BtsCI GGATG 3 cut(s) 10, 1978, 2395
BtsI GCAGTG 2 cut(s) 147, 1377
BtsIMutI CAGTG 5 cut(s) 147, 1377, 1386, 1604, 1944
BveI ACCTGC 3 cut(s) 906, 1190, 1608
Cac8I GCNNGC 3 cut(s) 33, 1115, 2670
CaiI CAGNNNCTG 1 cut(s) 2074
CciI TCATGA 2 cut(s) 1674, 2245
CfoI GCGC 2 cut(s) 1009, 1692
Cfr10I RCCGGY 1 cut(s) 616
Cfr13I GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
CseI GACGC 1 cut(s) 2209
CsiI ACCWGGT 1 cut(s) 2067
Csp6I GTAC 7 cut(s) 1016, 1030, 1141, 1602, 1612, 1638, 2759
CviQI GTAC 7 cut(s) 1016, 1030, 1141, 1602, 1612, 1638, 2759
DpnI GATC 8 cut(s) 57, 183, 770, 1452, 1518, 2239, 2449, 2527
DpnII GATC 8 cut(s) 55, 181, 768, 1450, 1516, 2237, 2447, 2525
DraIII CACNNNGTG 1 cut(s) 1712
EaeI YGGCCR 1 cut(s) 758
Eam1104I CTCTTC 6 cut(s) 264, 429, 1081, 1588, 1914, 2513
EarI CTCTTC 6 cut(s) 264, 429, 1081, 1588, 1914, 2513
EciI GGCGGA 1 cut(s) 2660
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 4 cut(s) 761, 1033, 2385, 2418
Eco147I AGGCCT 2 cut(s) 133, 952
Eco24I GRGCYC 4 cut(s) 37, 705, 1413, 1864
Eco32I GATATC 1 cut(s) 2491
Eco47I GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 3 cut(s) 353, 842, 2597
Eco91I GGTNACC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 703
EcoO109I RGGNCCY 3 cut(s) 536, 1348, 2365
EcoO65I GGTNACC 1 cut(s) 142
EcoRI GAATTC 4 cut(s) 160, 641, 823, 1163
EcoRII CCWGG 6 cut(s) 137, 1069, 1168, 1190, 2067, 2739
EcoRV GATATC 1 cut(s) 2491
EcoT14I CCWWGG 4 cut(s) 761, 1033, 2385, 2418
EcoT38I GRGCYC 4 cut(s) 37, 705, 1413, 1864
ErhI CCWWGG 4 cut(s) 761, 1033, 2385, 2418
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 2 cut(s) 103, 1851
FauNDI CATATG 1 cut(s) 634
FbaI TGATCA 1 cut(s) 1450
FblI GTMKAC 1 cut(s) 2169
Fnu4HI GCNGC 5 cut(s) 891, 1376, 1499, 2507, 2634
FokI GGATG 3 cut(s) 17, 1985, 2402
FriOI GRGCYC 4 cut(s) 37, 705, 1413, 1864
Fsp4HI GCNGC 5 cut(s) 891, 1376, 1499, 2507, 2634
FspBI CTAG 2 cut(s) 165, 401
GlaI GCGC 2 cut(s) 1008, 1691
GluI GCNGC 5 cut(s) 891, 1376, 1499, 2507, 2634
GsaI CCCAGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 2114
HaeII RGCGCY 1 cut(s) 1693
HaeIII GGCC 7 cut(s) 133, 380, 538, 760, 952, 971, 2610
HapII CCGG 2 cut(s) 617, 2009
HgaI GACGC 1 cut(s) 2209
HhaI GCGC 2 cut(s) 1009, 1692
Hin1I GRCGYC 1 cut(s) 2201
Hin6I GCGC 2 cut(s) 1007, 1690
HinP1I GCGC 2 cut(s) 1007, 1690
HindIII AAGCTT 3 cut(s) 854, 2055, 2615
HinfI GANTC 7 cut(s) 177, 686, 1396, 2432, 2483, 2582, 2720
HpaII CCGG 2 cut(s) 617, 2009
HphI GGTGA 8 cut(s) 161, 290, 365, 548, 824, 1055, 1970, 2070
Hpy166II GTNNAC 6 cut(s) 754, 1030, 1602, 1978, 2170, 2748
Hpy188I TCNGA 9 cut(s) 28, 837, 1156, 1455, 1777, 2125, 2488, 2517, 2709
Hpy8I GTNNAC 6 cut(s) 754, 1030, 1602, 1978, 2170, 2748
Hpy99I CGWCG 2 cut(s) 1724, 2203
HpyAV CCTTC 7 cut(s) 75, 250, 329, 1681, 1703, 2146, 2572
HpyCH4IV ACGT 4 cut(s) 248, 1104, 1150, 1711
HpyF10VI GCNNNNNNNGC 6 cut(s) 535, 899, 1381, 2209, 2474, 2642
HpySE526I ACGT 4 cut(s) 248, 1104, 1150, 1711
Hsp92I GRCGYC 1 cut(s) 2201
HspAI GCGC 2 cut(s) 1007, 1690
Ksp22I TGATCA 1 cut(s) 1450
Kzo9I GATC 8 cut(s) 55, 181, 768, 1450, 1516, 2237, 2447, 2525
LguI GCTCTTC 2 cut(s) 1081, 1588
LmnI GCTCC 4 cut(s) 803, 1819, 1835, 2209
Lsp1109I GCAGC 5 cut(s) 877, 1362, 1510, 2518, 2620
LweI GCATC 5 cut(s) 229, 588, 999, 1233, 1279
MabI ACCWGGT 1 cut(s) 2067
MaeI CTAG 2 cut(s) 165, 401
MaeII ACGT 4 cut(s) 248, 1104, 1150, 1711
MaeIII GTNAC 6 cut(s) 87, 142, 167, 278, 2076, 2308
MalI GATC 8 cut(s) 57, 183, 770, 1452, 1518, 2239, 2449, 2527
MboI GATC 8 cut(s) 55, 181, 768, 1450, 1516, 2237, 2447, 2525
MflI RGATCY 3 cut(s) 55, 1516, 2447
MhlI GDGCHC 8 cut(s) 37, 232, 705, 1413, 1531, 1864, 1890, 2750
MlsI TGGCCA 1 cut(s) 760
MluNI TGGCCA 1 cut(s) 760
MlyI GAGTC 2 cut(s) 1405, 2441
MmeI TCCRAC 5 cut(s) 277, 957, 1104, 1950, 2670
Mox20I TGGCCA 1 cut(s) 760
MroXI GAANNNNTTC 2 cut(s) 645, 1128
MscI TGGCCA 1 cut(s) 760
MseI TTAA 6 cut(s) 542, 977, 1220, 1767, 2268, 2351
MslI CAYNNNNRTG 4 cut(s) 237, 251, 564, 1358
Msp20I TGGCCA 1 cut(s) 760
MspI CCGG 2 cut(s) 617, 2009
MspR9I CCNGG 6 cut(s) 139, 1071, 1170, 1192, 2069, 2741
Mva1269I GAATGC 4 cut(s) 333, 396, 518, 893
MvaI CCWGG 6 cut(s) 139, 1071, 1170, 1192, 2069, 2741
MvnI CGCG 1 cut(s) 902
MwoI GCNNNNNNNGC 6 cut(s) 535, 899, 1381, 2209, 2474, 2642
NcoI CCATGG 3 cut(s) 761, 1033, 2385
NdeI CATATG 1 cut(s) 634
NdeII GATC 8 cut(s) 55, 181, 768, 1450, 1516, 2237, 2447, 2525
NlaIV GGNNCC 4 cut(s) 537, 805, 834, 1815
NmuCI GTSAC 3 cut(s) 167, 278, 2076
NspI RCATGY 1 cut(s) 2254
PagI TCATGA 2 cut(s) 1674, 2245
PaqCI CACCTGC 2 cut(s) 1190, 1608
PceI AGGCCT 2 cut(s) 133, 952
PciSI GCTCTTC 2 cut(s) 1081, 1588
PcsI WCGNNNNNNNCGW 2 cut(s) 1585, 1825
PctI GAATGC 4 cut(s) 333, 396, 518, 893
PdmI GAANNNNTTC 2 cut(s) 645, 1128
PfeI GAWTC 5 cut(s) 177, 686, 2483, 2582, 2720
PflMI CCANNNNNTGG 1 cut(s) 2227
PkrI GCNGC 5 cut(s) 892, 1377, 1500, 2508, 2635
PleI GAGTC 2 cut(s) 1404, 2440
PpsI GAGTC 2 cut(s) 1404, 2440
PpuMI RGGWCCY 2 cut(s) 1348, 2365
PshAI GACNNNNGTC 1 cut(s) 66
PsiI TTATAA 2 cut(s) 206, 738
Psp124BI GAGCTC 1 cut(s) 705
Psp5II RGGWCCY 2 cut(s) 1348, 2365
Psp6I CCWGG 6 cut(s) 137, 1069, 1168, 1190, 2067, 2739
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 313
PspGI CCWGG 6 cut(s) 137, 1069, 1168, 1190, 2067, 2739
PspN4I GGNNCC 4 cut(s) 537, 805, 834, 1815
PspPI GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
PspPPI RGGWCCY 2 cut(s) 1348, 2365
PstI CTGCAG 2 cut(s) 1372, 1619
PstNI CAGNNNCTG 1 cut(s) 2074
PsuI RGATCY 3 cut(s) 55, 1516, 2447
RsaI GTAC 7 cut(s) 1017, 1031, 1142, 1603, 1613, 1639, 2760
RsaNI GTAC 7 cut(s) 1016, 1030, 1141, 1602, 1612, 1638, 2759
RseI CAYNNNNRTG 4 cut(s) 237, 251, 564, 1358
SacI GAGCTC 1 cut(s) 705
SapI GCTCTTC 2 cut(s) 1081, 1588
SaqAI TTAA 6 cut(s) 542, 977, 1220, 1767, 2268, 2351
SatI GCNGC 5 cut(s) 891, 1376, 1499, 2507, 2634
Sau3AI GATC 8 cut(s) 55, 181, 768, 1450, 1516, 2237, 2447, 2525
Sau96I GGNCC 7 cut(s) 68, 378, 536, 1067, 1251, 1348, 2365
ScaI AGTACT 1 cut(s) 1017
SchI GAGTC 2 cut(s) 1405, 2441
ScrFI CCNGG 6 cut(s) 139, 1071, 1170, 1192, 2069, 2741
SduI GDGCHC 8 cut(s) 37, 232, 705, 1413, 1531, 1864, 1890, 2750
SexAI ACCWGGT 1 cut(s) 2067
SfaNI GCATC 5 cut(s) 229, 588, 999, 1233, 1279
SfcI CTRYAG 3 cut(s) 1284, 1368, 1615
SinI GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
SmiMI CAYNNNNRTG 4 cut(s) 237, 251, 564, 1358
SmlI CTYRAG 8 cut(s) 9, 122, 706, 1406, 1732, 2160, 2369, 2399
SmoI CTYRAG 8 cut(s) 9, 122, 706, 1406, 1732, 2160, 2369, 2399
SseBI AGGCCT 2 cut(s) 133, 952
SsiI CCGC 1 cut(s) 2645
SspI AATATT 1 cut(s) 1127
SspMI CTAG 2 cut(s) 165, 401
SstI GAGCTC 1 cut(s) 705
StuI AGGCCT 2 cut(s) 133, 952
StyD4I CCNGG 6 cut(s) 137, 1069, 1168, 1190, 2067, 2739
StyI CCWWGG 4 cut(s) 761, 1033, 2385, 2418
TaiI ACGT 4 cut(s) 251, 1107, 1153, 1714
TaqI TCGA 5 cut(s) 101, 180, 771, 1819, 2198
TatI WGTACW 5 cut(s) 1015, 1140, 1601, 1637, 2758
TfiI GAWTC 5 cut(s) 177, 686, 2483, 2582, 2720
Tru1I TTAA 6 cut(s) 542, 977, 1220, 1767, 2268, 2351
Tru9I TTAA 6 cut(s) 542, 977, 1220, 1767, 2268, 2351
TscAI CASTG 5 cut(s) 154, 1377, 1386, 1604, 1944
TseFI GTSAC 3 cut(s) 167, 278, 2076
TseI GCWGC 5 cut(s) 890, 1375, 1498, 2506, 2633
Tsp45I GTSAC 3 cut(s) 167, 278, 2076
TspDTI ATGAA 9 cut(s) 269, 311, 634, 651, 1663, 1890, 2037, 2181, 2616
TspGWI ACGGA 4 cut(s) 425, 477, 816, 2495
TspRI CASTG 5 cut(s) 154, 1377, 1386, 1604, 1944
Van91I CCANNNNNTGG 1 cut(s) 2227
VneI GTGCAC 1 cut(s) 2746
VpaK11BI GGWCC 5 cut(s) 68, 1067, 1251, 1348, 2365
XapI RAATTY 6 cut(s) 160, 428, 641, 823, 1163, 1740
XbaI TCTAGA 1 cut(s) 400
XceI RCATGY 1 cut(s) 2254
XcmI CCANNNNNNNNNTGG 1 cut(s) 1106
XmiI GTMKAC 1 cut(s) 2169
XmnI GAANNNNTTC 2 cut(s) 645, 1128
XspI CTAG 2 cut(s) 165, 401
ZrmI AGTACT 1 cut(s) 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.