Rh1CG118800

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000253
Physical Location & Seq
Reverse (-)
25709940 .. 25712800
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG118800.1

Sequence Viewer

Length: 321 bp
ATGTTGGTCGGAATGAACTTTTATCCGGCACTGCACAGGATGTTGCAGAGTAAGCAAGAATGGGGCCATGATTTTAAATTTCAAGGTCGATCAATCTTTGGCTTCGGCGTATTAGAATGGACTGAAACTATCTTGGAGACCTTCAAGGATACCTTATACAAAGCAGGTATATATGGAGCTGTTGCTGTTTCTCGCTATCCTTACGAGTCTTCAAAGAATGTTTGGAGGGCATTTTGTGAATTATGGGGCCCTTTGTCCAACACATTGCATTTTGCCGATGGTGAGATGAGCATTTCTTTATCTGACTTGCAAGTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

106

Amino Acids

12.21

Weight (kDa)

5.85

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AcsI RAATTY 1 cut(s) 77
AgsI TTSAA 3 cut(s) 83, 145, 213
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 131
AoxI GGCC 2 cut(s) 64, 247
ApaI GGGCCC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 3 cut(s) 64, 247, 248
AsuHPI GGTGA 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 272
BciVI GTATCC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 155
BfuI GTATCC 1 cut(s) 142
BmgT120I GGNCC 3 cut(s) 64, 247, 248
BmiI GGNNCC 3 cut(s) 65, 248, 249
BpiI GAAGAC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 263
BseGI GGATG 1 cut(s) 45
BseMI GCAATG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 17
BshFI GGCC 2 cut(s) 66, 249
BsiSI CCGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 2 cut(s) 66, 249
Bso31I GGTCTC 1 cut(s) 131
Bsp120I GGGCCC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 89
BspANI GGCC 2 cut(s) 66, 249
BspLI GGNNCC 3 cut(s) 65, 248, 249
BspMI ACCTGC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 263
BssMI GATC 1 cut(s) 89
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 1 cut(s) 92
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 201
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 66, 249
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
BveI ACCTGC 1 cut(s) 155
Cfr13I GGNCC 3 cut(s) 64, 247, 248
CviAII CATG 1 cut(s) 68
CviJI RGCY 4 cut(s) 66, 102, 179, 249
CviKI_1 RGCY 4 cut(s) 66, 102, 179, 249
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
DraI TTTAAA 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 131
EcoO109I RGGNCCY 2 cut(s) 247, 248
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 1 cut(s) 71
FaiI YATR 6 cut(s) 69, 157, 170, 172, 174, 244
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 1 cut(s) 67
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 251
HaeIII GGCC 2 cut(s) 66, 249
HapII CCGG 1 cut(s) 26
Hin1II CATG 1 cut(s) 71
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 3 cut(s) 11, 304, 320
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 34, 46, 268, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
Hsp92II CATG 1 cut(s) 71
Kzo9I GATC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 3 cut(s) 22, 39, 150
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MboII GAAGA 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 2 cut(s) 77, 239
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 1 cut(s) 219
MseI TTAA 1 cut(s) 75
MspI CCGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 1 cut(s) 89
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 3 cut(s) 65, 248, 249
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 65, 248, 249
PspOMI GGGCCC 1 cut(s) 247
PspPI GGNCC 3 cut(s) 64, 247, 248
SaqAI TTAA 1 cut(s) 75
Sau3AI GATC 1 cut(s) 89
Sau96I GGNCC 3 cut(s) 64, 247, 248
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 251
SetI ASST 5 cut(s) 88, 143, 155, 169, 181
Sse9I AATT 2 cut(s) 77, 239
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 77, 239
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 36
XapI RAATTY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.