Rh7AG441200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000253
Physical Location & Seq
Reverse (-)
59789006 .. 59789290
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG441200.1

Sequence Viewer

Length: 285 bp
ATGGAAGCTCCAGATCAAGTCATTGAGAATGAACTAGTTGTGCCAACCATTTGTTTGAGTGAAGCTTCTTCAAACCAAGCTCTGTCAAAATTGTCGAACCTAGAGAGTTCTATGTCTGATTTACTTGGTTCAGAATTGTCATCCTTCAAGAAGAATTGTCTCATTGCTCAGATTGTGGACATTTATGATGAAGTTTCTTCCTCTTTGACACCAAAGGAACTATTAGCCCATGTTCCGGACATCACATCAAGGCTTGACATGCTCCGCCCTATAATTAAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.27

Weight (kDa)

4.42

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 2 cut(s) 72, 148
AhlI ACTAGT 1 cut(s) 34
AluBI AGCT 3 cut(s) 8, 65, 80
AluI AGCT 3 cut(s) 8, 65, 80
Alw26I GTCTC 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 164
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 2 cut(s) 35, 101
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 162
BseAI TCCGGA 1 cut(s) 235
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 182
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 164
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 162
BssMI GATC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 262
BtsCI GGATG 1 cut(s) 140
CviAII CATG 2 cut(s) 230, 259
CviJI RGCY 5 cut(s) 8, 65, 80, 227, 253
CviKI_1 RGCY 5 cut(s) 8, 65, 80, 227, 253
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EciI GGCGGA 1 cut(s) 254
FaeI CATG 2 cut(s) 233, 262
FaiI YATR 5 cut(s) 113, 186, 231, 260, 272
FatI CATG 2 cut(s) 229, 258
FokI GGATG 1 cut(s) 127
FspBI CTAG 2 cut(s) 35, 101
HapII CCGG 1 cut(s) 236
Hin1II CATG 2 cut(s) 233, 262
HindIII AAGCTT 1 cut(s) 63
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 118, 133, 171
Hpy188III TCNNGA 3 cut(s) 11, 148, 236
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 2 cut(s) 233, 262
Kpn2I TCCGGA 1 cut(s) 235
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 2 cut(s) 13, 267
LpnPI CCDG 2 cut(s) 24, 249
MaeI CTAG 2 cut(s) 35, 101
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 3 cut(s) 60, 163, 189
MluCI AATT 4 cut(s) 89, 134, 154, 273
MnlI CCTC 1 cut(s) 211
MroI TCCGGA 1 cut(s) 235
MseI TTAA 1 cut(s) 276
MspI CCGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 1 cut(s) 13
NlaIII CATG 2 cut(s) 233, 262
NspI RCATGY 1 cut(s) 262
SaqAI TTAA 1 cut(s) 276
Sau3AI GATC 1 cut(s) 13
SetI ASST 4 cut(s) 10, 67, 82, 102
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 4 cut(s) 89, 134, 154, 273
SsiI CCGC 1 cut(s) 265
SspMI CTAG 2 cut(s) 35, 101
TaqI TCGA 1 cut(s) 95
TasI AATT 4 cut(s) 89, 134, 154, 273
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 45, 204
XceI RCATGY 1 cut(s) 262
XspI CTAG 2 cut(s) 35, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.