Rmu_sc0003936.1_g000040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003936.1
OG0000253
Physical Location & Seq
Reverse (-)
186984 .. 187355
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003936.1_g000040.1.cds

Sequence Viewer

Length: 372 bp
atgtatgttgtaccctctcaggtaatggaagcacatggacatatatgtattgaacgagcacttaacaagcgcgggcaggaagccatagagggtccagagtataggcggtcttcaccattgaattctgtacaagttgatgcatcagtgaaagacaaaattacatggataagcgaagtgccagtgcattctggttatctcacattcagtcatgattctaaagatcaagccataaagacttgtcgctcctactgtgctatatttccagattgcacccttgagaaagttaataatgaagaggatggggatttcttcactcaccaagagaacttttatcctgttctttataaaatgttgaaagacaaacaagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.14

Weight (kDa)

5.49

Isoelectric Point (pI)

65.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 72, 106
AcsI RAATTY 1 cut(s) 121
AfaI GTAC 2 cut(s) 12, 129
AgsI TTSAA 3 cut(s) 53, 121, 355
Alw21I GWGCWC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 121
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 105, 308
AvaII GGWCC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 61
BccI CCATC 1 cut(s) 293
BfaI CTAG 1 cut(s) 370
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 2 cut(s) 127, 149
BpiI GAAGAC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 61
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 2 cut(s) 72, 106
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 72
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 93
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 1 cut(s) 179
BssMI GATC 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 288
BstAUI TGTACA 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstUI CGCG 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 150, 186
Cac8I GCNNGC 1 cut(s) 74
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 11, 128
CviAII CATG 3 cut(s) 35, 162, 209
CviJI RGCY 2 cut(s) 83, 227
CviKI_1 RGCY 2 cut(s) 83, 227
CviQI GTAC 2 cut(s) 11, 128
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 142
FaeI CATG 3 cut(s) 38, 165, 212
FatI CATG 3 cut(s) 34, 161, 208
FauI CCCGC 1 cut(s) 65
FokI GGATG 1 cut(s) 311
FspBI CTAG 1 cut(s) 370
GlaI GCGC 1 cut(s) 71
HhaI GCGC 1 cut(s) 72
Hin1II CATG 3 cut(s) 38, 165, 212
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 212
HphI GGTGA 2 cut(s) 105, 308
Hpy188III TCNNGA 3 cut(s) 95, 209, 263
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 3 cut(s) 140, 184, 270
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 3 cut(s) 38, 165, 212
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 7 cut(s) 5, 62, 108, 174, 192, 276, 348
LweI GCATC 2 cut(s) 127, 149
MaeI CTAG 1 cut(s) 370
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 102, 301, 305
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 2 cut(s) 121, 156
MnlI CCTC 3 cut(s) 25, 82, 289
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 2 cut(s) 63, 285
Mva1269I GAATGC 1 cut(s) 184
MvnI CGCG 1 cut(s) 72
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 38, 165, 212
NlaIV GGNNCC 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 142
PagI TCATGA 1 cut(s) 208
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 92
RsaI GTAC 2 cut(s) 12, 129
RsaNI GTAC 2 cut(s) 11, 128
SaqAI TTAA 2 cut(s) 63, 285
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 61
SetI ASST 1 cut(s) 24
SfaNI GCATC 2 cut(s) 127, 149
SinI GGWCC 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 2 cut(s) 121, 156
SsiI CCGC 2 cut(s) 72, 106
SspMI CTAG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 251
TasI AATT 2 cut(s) 121, 156
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 63, 285
Tru9I TTAA 2 cut(s) 63, 285
TscAI CASTG 2 cut(s) 150, 186
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 2 cut(s) 150, 186
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 121
XspI CTAG 1 cut(s) 370
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.