Rmu_sc0020929.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020929.1
OG0000253
Physical Location & Seq
Forward (+)
1 .. 997
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020929.1_g000001.1.cds

Sequence Viewer

Length: 550 bp
aagatgaatccacatggagaactttgcactgaaagagttctcggaaaaggtgaacgagtggccaaaaacggtcgggaatatgagagatctcttcctttaagttcgatcaaactcaccatgtcgcttgagagtcggccaagggctactcaggccaatgtgcattctggcattcttagattcgaccctcatacagaggatgaggtcatcaaatcgtgtccttgttatggcaacatgtttcaggcctattctctggaaaaggtgaacaatgatgagtatggtgatgataagatgttggtcggaacgaacttttatccggcactccactggatgttgcagagtaagcaagaatggggcaatgattttaactttcgaggtcgatccatccttggctttggcgtattagaatggaccgaaaatgtcttggagaccttcaaggataccttatatgaagtaggtatatatggagctattgctgtttctcgctatccttacaagtcttcaaagaatgtttggagagcgttttgtgaattatggggccctttgtccaaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

183

Amino Acids

21.02

Weight (kDa)

6.49

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 2 cut(s) 60, 134
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 2 cut(s) 433, 501
AluBI AGCT 1 cut(s) 467
AluI AGCT 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 1 cut(s) 372
AoxI GGCC 5 cut(s) 60, 134, 150, 240, 535
ApaI GGGCCC 1 cut(s) 539
Asp700I GAANNNNTTC 1 cut(s) 36
AspS9I GGNCC 3 cut(s) 408, 535, 536
AsuHPI GGTGA 4 cut(s) 62, 106, 271, 290
AvaII GGWCC 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 539
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 489
BccI CCATC 1 cut(s) 389
BciVI GTATCC 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 419
BfuI GTATCC 1 cut(s) 430
BglII AGATCT 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 3 cut(s) 408, 535, 536
BmiI GGNNCC 2 cut(s) 536, 537
BpiI GAAGAC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 137, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 137, 385
BseGI GGATG 3 cut(s) 202, 333, 381
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 539
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 5 cut(s) 62, 136, 152, 242, 537
BsiEI CGRYCG 1 cut(s) 73
BsiSI CCGG 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 419
BsmI GAATGC 2 cut(s) 160, 168
BsnI GGCC 5 cut(s) 62, 136, 152, 242, 537
Bso31I GGTCTC 1 cut(s) 419
Bsp120I GGGCCC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 3 cut(s) 86, 105, 377
BspANI GGCC 5 cut(s) 62, 136, 152, 242, 537
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 536, 537
BspPI GGATC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 137, 385
BssMI GATC 3 cut(s) 86, 105, 377
BssT1I CCWWGG 2 cut(s) 137, 385
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 147, 173
BstF5I GGATG 3 cut(s) 202, 333, 381
BstKTI GATC 3 cut(s) 89, 108, 380
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 3 cut(s) 86, 105, 377
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 149, 340
BstNSI RCATGY 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 539
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 5 cut(s) 62, 136, 152, 242, 537
BtsCI GGATG 3 cut(s) 202, 333, 381
BtsIMutI CAGTG 2 cut(s) 27, 322
Cfr13I GGNCC 3 cut(s) 408, 535, 536
CviAII CATG 3 cut(s) 14, 118, 232
CviJI RGCY 8 cut(s) 62, 136, 143, 152, 242, 390, 467, 537
CviKI_1 RGCY 8 cut(s) 62, 136, 143, 152, 242, 390, 467, 537
DdeI CTNAG 2 cut(s) 147, 173
DpnI GATC 3 cut(s) 88, 107, 379
DpnII GATC 3 cut(s) 86, 105, 377
EaeI YGGCCR 2 cut(s) 60, 134
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 137, 385
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 408
EcoO109I RGGNCCY 2 cut(s) 535, 536
EcoT14I CCWWGG 2 cut(s) 137, 385
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 2 cut(s) 137, 385
FaeI CATG 3 cut(s) 17, 121, 235
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FatI CATG 3 cut(s) 13, 117, 231
FokI GGATG 3 cut(s) 209, 340, 368
FriOI GRGCYC 1 cut(s) 539
HaeIII GGCC 5 cut(s) 62, 136, 152, 242, 537
HapII CCGG 1 cut(s) 314
Hin1II CATG 3 cut(s) 17, 121, 235
HinfI GANTC 3 cut(s) 7, 130, 177
HpaII CCGG 1 cut(s) 314
HphI GGTGA 4 cut(s) 62, 106, 271, 290
Hpy166II GTNNAC 2 cut(s) 53, 262
Hpy188I TCNGA 2 cut(s) 44, 299
Hpy188III TCNNGA 2 cut(s) 74, 251
Hpy8I GTNNAC 2 cut(s) 53, 262
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 27, 160, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 340
HpyF3I CTNAG 2 cut(s) 147, 173
Hsp92II CATG 3 cut(s) 17, 121, 235
Kzo9I GATC 3 cut(s) 86, 105, 377
LmnI GCTCC 1 cut(s) 464
LpnPI CCDG 6 cut(s) 134, 150, 224, 236, 310, 327
MalI GATC 3 cut(s) 88, 107, 379
MboI GATC 3 cut(s) 86, 105, 377
MboII GAAGA 2 cut(s) 83, 489
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 539
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 1 cut(s) 527
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 4 cut(s) 187, 193, 195, 365
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 1 cut(s) 62
MseI TTAA 2 cut(s) 98, 363
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 314
Mva1269I GAATGC 2 cut(s) 160, 168
MwoI GCNNNNNNNGC 2 cut(s) 149, 340
NdeII GATC 3 cut(s) 86, 105, 377
NlaIII CATG 3 cut(s) 17, 121, 235
NlaIV GGNNCC 2 cut(s) 536, 537
NspI RCATGY 1 cut(s) 235
PceI AGGCCT 1 cut(s) 242
PciI ACATGT 1 cut(s) 231
PctI GAATGC 2 cut(s) 160, 168
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 7, 177
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PscI ACATGT 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 536, 537
PspOMI GGGCCC 1 cut(s) 535
PspPI GGNCC 3 cut(s) 408, 535, 536
PsuI RGATCY 1 cut(s) 86
SaqAI TTAA 2 cut(s) 98, 363
Sau3AI GATC 3 cut(s) 86, 105, 377
Sau96I GGNCC 3 cut(s) 408, 535, 536
SchI GAGTC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 539
SetI ASST 8 cut(s) 52, 204, 261, 376, 431, 443, 457, 469
SinI GGWCC 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 527
SseBI AGGCCT 1 cut(s) 242
StuI AGGCCT 1 cut(s) 242
StyI CCWWGG 2 cut(s) 137, 385
TaaI ACNGT 1 cut(s) 71
TaqI TCGA 4 cut(s) 104, 180, 370, 376
TaqII GACCGA 1 cut(s) 425
TasI AATT 1 cut(s) 527
TfiI GAWTC 2 cut(s) 7, 177
Tru1I TTAA 2 cut(s) 98, 363
Tru9I TTAA 2 cut(s) 98, 363
TscAI CASTG 2 cut(s) 34, 329
TspDTI ATGAA 2 cut(s) 20, 462
TspRI CASTG 2 cut(s) 34, 329
VpaK11BI GGWCC 1 cut(s) 408
XceI RCATGY 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.