Rh2DG433000

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
62610337 .. 62613519
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG433000.1

Sequence Viewer

Length: 3183 bp
ATGACCCCCCTTGTATGGTTGCAGGTCATGGATGCAAGTGGCCACATTTGTACTGAAAGAGCTCTTGACGCCCGCGGAAAGGTACTTGAACAAGGACCGGAATATCACAGATCCTCATTCCTGAGCAGCATACCTATTCATCCACCTCCTAAAGACATAGTCACTTGGGTGACTGAGGTACAAGTTCATTCAGGGTACCTTACTTTTGATCAGAGTTCCGAGGATCAAGTAATAAGAACCTGTCGAACTCATGGTGCTTCATTTCAAGCTCGTACATTAGAAAAGGTCAACAATGATGAGGAAGGTGATTCTTTTACTCTTCAGGAAGATTTCTATCCTATTCTTCATAAGATGCTGAGAGACAAACAAGACTGGAAACATACTCCTTATTTCCGAGGAGTAGCAACCTTTGAGCTTGGCACTATGGAGTGGACTGATTCTATAATGAGAAGATTTGGGGGTATTTTGGAGAATGCAGGAATACTTGGTGCTGTTGGAGTCTCTTGTTTTCCATACCACTATTCTACGAATACATGGAAGGCCTTTTGTGAATTATGGGGGCCACTAACCAATACACTGCACCATGGGAATGGAGAAATGGGCATTTCTTTATATGATATGAGAGTGATCGGAGGTTTACCAATTCTGGGGCATCCATATGAAGAATTTATCCCTGTCAACAGTGAGTTGCACTGCAGTGAGCGTTATCCATCTACAGTTGTAGAGCTCTTGCGCATTCACTCTCAGTTGTGTATTTTTCACAAAAGGGATTTCATTTATTGGGATGAGTGGGTTGATTATTTTTACCGCGGAAAGATATTGTACGCGGCTTATGGTGAGGTTGGGAATAGAAAGGCTTATCCACATCAAGGCAGATTCTCACGGCAGCAACCCGATTTAACTATTTCGAAGGAGGGGGCCCTGGCTGCATTTTTGGCATATTGGCTTAGCAGGTTTGTCTTACCCTCTAGTCATTCCAATCTCCGTCCCGACACATTTTATATGGCCTCTTTGATGGCACAAGGCATCAGGGTTTCTTTAGCACCTTCAGTACTGGGCTATATTTACCATGGTCTTGGCCTAGCTGCCACTGATCCAGAAGGGCCTGGAAATTCGAATGTTTGCTTTCCCATTCATTATGTTATTGGTTGGCTAGGAGAACACTTCCCCTGCTTATATAGAGCCCGAGCTGATAGTGACTTCCCAACTAACCATCCGTATTTGGCAAGATATGCGGGTATTGAGGCCGTTGATTTGGATATTTCATCGGCTAGACGTGTTTTCAGAACTGATATTTCTGTGATTTACCGTCCTAGTTCATTTATTGAACAAAGCGGTTGCTTTTTGACTGACGACAGTGGCCTGTCAAGTGATCAGTTCGAGTTTTTGGTTTGTATGCGCTCTTCATTGTTGCCGGTGAGAGTAGGACGTGATCTCCGCTTGGAACCATATTATCCGAACAGATTTGCTCGCCAATTTGGCTTTGATCAAGGGGTTCCCTCAAACAGACTCAGTTTTGGCCTTGCAAGAAGGCGCCAGTGCTGCATTGAGGATTTAGCCAAGGCCCAGCAGGTACTCCTCCAAACAGATACCGGTGCTCGCTTTTACATCCCACGTTCCACCTATAATGGGACATGTACCTGGACATATTGTAGGTGGTGGATGAGAGCTTGTGCACCATACCTAGGCAGGTCTGTGTCCAATGTTTACTTGACATTGACCAAACGTCGACTTGAGAAAAGAGATGATATATTTGTGATCAAATCCATCAGAGAGTTCTCTTCCAATTTGCGAAAAGAGGTCTTGTTTTCAGAAGAGGACATAAGTAGGTCGGCCGCTTATGACAAGAATCCCCAACCTGCTAGAAGGACGAACAGGTCGGGTGAATATCGGAAAGCATCTTCGAGTAATTTTGAAACTAGGCATTCAAAACGACAACGCAACGAGCGACATGGCATCAAAGAAACTACCAGAGCTCCATTTCAAAATAGTGGGGCAGCAAAGACTCTCAAGTGTGCTCAATTTGAGAGATACGATGGTTATGAAGATGGTAGAATTGATGATACAACTATTCCTCAGGATGATTTTGTTCAGGACAAAGATGTTTCCCCCTGTGATGGTGACAAAATGACTACTCCAAGGTTGAAATCAGTAATATTGCGAGTTACAGAATCAAATGGTTCAGAGGTGGAGACACCACTAAAGGACTTGGAACAAAAGTCAAGAAGACCACCCGAGTTGGAGCCGGAAAATTTGGAACCAAAATCAATTTGCTCAACGTCTAAAGAATGTGATGTAGGGGTACTAGTGGAGACCCCAGTGCTGGAGACAAATGATTTTGAACAAAACCTGCAGCAATCAGAGCCTAGGTTGAGAGATTCCAAAATCCAAGCTGAAGATGTCCATGACTCTGTTAGTGGAGCCACTGAACCTATCGATTCCAACGCCTCCGAGCATATTGATGAAGGTATTAACTCACTCACTGAGGCTATATCGATTCCGCATGAAATTTTTGGTGAAGGATTGAATAAACTCCGGATGGATTTTATTATTGCCGAGATACAACAGATCCTAGGCAAATTGAACTCGTCTCAATCATTTGGGGCAATTCTTGATTGCCAAGACGAAATTTCAAAAACACTTGATGTGTTGGAGTTGATGTTCAAAACCCTCGGCTCTGGTAAGGACAGATTTGAGTGGTTTACTGCAAAAGTTTATCTAGCCTTTGACTTGGCAGCTCAGCTTTCTCAAGACATGAGCATTATTGAGAAAGATCATGGATTGGACATTGAGCGCATCAATGAGTTAATTCAAAACCATAAAAAGTGTCAAGCTGCCAAGAAAGTCCTTGATTTGGAATTATTGAGCCTTAATCAGGAACTTGAAAATTTAAAGGCCACCGAACGAAGTATTATTGAGGTAGAAGAGAAAGCTCAACGGCTGCGCAAGGATTATGAGACTGCAAAAAATCACCTTGAAAAGAAAATAAGCTGGTCTGAGGCTTCTCTTGAGCGTCAAAACAAACTGGATGAAGAGCTTTGTCAGGCAAGGCTTGAGGCTCGAGAGGATAAACTTGCAGAATTTAAGAATGTCGAGAGCTCATTTAAAGTCCGGCAAGAGGAGCTGGAGAAGCAAATAGACACTTTGAAGTCGTTTGGTCAACAGCTTAAGCAAAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1060

Amino Acids

121.26

Weight (kDa)

5.79

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 160 - 555 1.3e-36 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1876
Acc16I TGCGCA 2 cut(s) 734, 2945
Acc36I ACCTGC 6 cut(s) 13, 942, 1561, 1680, 1867, 2358
Acc65I GGTACC 1 cut(s) 195
AccB1I GGYRCC 2 cut(s) 195, 1533
AccI GTMKAC 1 cut(s) 1729
AccII CGCG 3 cut(s) 75, 810, 827
AccIII TCCGGA 1 cut(s) 2535
AclWI GGATC 4 cut(s) 105, 231, 1088, 2563
AcoI YGGCCR 2 cut(s) 40, 1833
AcsI RAATTY 7 cut(s) 665, 1111, 2251, 2508, 2628, 2887, 3080
AcuI CTGAAG 3 cut(s) 305, 1032, 2415
AcyI GRCGYC 2 cut(s) 69, 1534
AflII CTTAAG 1 cut(s) 3167
AflIII ACRYGT 2 cut(s) 1276, 1634
AgeI ACCGGT 1 cut(s) 1592
AhdI GACNNNNNGTC 1 cut(s) 1725
AhlI ACTAGT 1 cut(s) 2305
AjiI CACGTC 2 cut(s) 1277, 1430
AjnI CCWGG 3 cut(s) 921, 1105, 1640
AleI CACNNNNGTG 2 cut(s) 167, 696
AloI GAACNNNNNNTCC 2 cut(s) 2645, 2677
Alw21I GWGCWC 7 cut(s) 64, 729, 1600, 1678, 1978, 2020, 3101
Alw26I GTCTC 7 cut(s) 354, 505, 2186, 2306, 2321, 2595, 2951
Alw44I GTGCAC 1 cut(s) 1674
AlwI GGATC 4 cut(s) 105, 231, 1088, 2563
Ama87I CYCGRG 3 cut(s) 1185, 2234, 3060
Aor13HI TCCGGA 1 cut(s) 2535
ApaI GGGCCC 1 cut(s) 922
ApaLI GTGCAC 1 cut(s) 1674
ApoI RAATTY 7 cut(s) 665, 1111, 2251, 2508, 2628, 2887, 3080
AsiGI ACCGGT 1 cut(s) 1592
Asp718I GGTACC 1 cut(s) 195
AspA2I CCTAGG 3 cut(s) 1684, 2366, 2572
AspLEI GCGC 5 cut(s) 735, 1401, 1536, 2796, 2946
AspS9I GGNCC 6 cut(s) 95, 560, 918, 919, 1103, 1564
AsuHPI GGTGA 8 cut(s) 181, 317, 848, 1429, 1895, 2132, 2528, 2963
AsuII TTCGAA 2 cut(s) 908, 1115
AvaI CYCGRG 3 cut(s) 1185, 2234, 3060
AvaII GGWCC 1 cut(s) 95
AvrII CCTAGG 3 cut(s) 1684, 2366, 2572
AxyI CCTNAGG 1 cut(s) 2076
BaeGI GKGCMC 2 cut(s) 922, 1678
BaeI ACNNNNGTAYC 2 cut(s) 2023, 2056
BalI TGGCCA 1 cut(s) 42
BanI GGYRCC 2 cut(s) 195, 1533
BanII GRGCYC 6 cut(s) 64, 729, 922, 1186, 1978, 3101
BarI GAAGNNNNNNTAC 2 cut(s) 1387, 1419
BbsI GAAGAC 1 cut(s) 2233
Bbv12I GWGCWC 7 cut(s) 64, 729, 1600, 1678, 1978, 2020, 3101
BccI CCATC 8 cut(s) 718, 1009, 1221, 1775, 2030, 2042, 2111, 2533
BceAI ACGGC 3 cut(s) 899, 1232, 2954
BciT130I CCWGG 3 cut(s) 923, 1107, 1642
BclI TGATCA 4 cut(s) 208, 1372, 1486, 1758
BcoDI GTCTC 7 cut(s) 354, 505, 2186, 2306, 2321, 2595, 2951
BcuI ACTAGT 1 cut(s) 2305
BfmI CTRYAG 3 cut(s) 694, 714, 2351
BfoI RGCGCY 1 cut(s) 1537
BfrI CTTAAG 1 cut(s) 3167
BfuAI ACCTGC 6 cut(s) 13, 942, 1561, 1680, 1867, 2358
BglI GCCNNNNNGGC 1 cut(s) 1479
BlnI CCTAGG 3 cut(s) 1684, 2366, 2572
BlpI GCTNAGC 2 cut(s) 947, 2739
BmcAI AGTACT 1 cut(s) 1053
Bme1390I CCNGG 3 cut(s) 923, 1107, 1642
Bme18I GGWCC 1 cut(s) 95
BmeRI GACNNNNNGTC 1 cut(s) 1725
BmeT110I CYCGRG 3 cut(s) 1185, 2234, 3060
BmgBI CACGTC 2 cut(s) 1277, 1430
BmgT120I GGNCC 6 cut(s) 95, 560, 918, 919, 1103, 1564
BmrFI CCNGG 3 cut(s) 923, 1107, 1642
BmrI ACTGGG 2 cut(s) 1064, 2312
BmsI GCATC 7 cut(s) 22, 342, 661, 1035, 1907, 1965, 2805
BmuI ACTGGG 2 cut(s) 1064, 2312
BpiI GAAGAC 1 cut(s) 2233
BpmI CTGGAG 2 cut(s) 2345, 3146
Bpu10I CCTNAGC 1 cut(s) 122
Bpu1102I GCTNAGC 2 cut(s) 947, 2739
Bpu14I TTCGAA 2 cut(s) 908, 1115
BpuEI CTTGAG 5 cut(s) 1754, 1994, 2733, 3029, 3074
Bsa29I ATCGAT 2 cut(s) 2436, 2495
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 2 cut(s) 69, 1534
BsaI GGTCTC 1 cut(s) 2306
BsaWI WCCGGW 3 cut(s) 97, 1592, 2535
BsaXI ACNNNNNCTCC 6 cut(s) 1419, 1449, 1960, 1990, 2645, 2675
Bse118I RCCGGY 2 cut(s) 1414, 1592
Bse1I ACTGG 5 cut(s) 377, 1059, 1537, 2318, 3030
Bse21I CCTNAGG 1 cut(s) 2076
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 2535
BseBI CCWGG 3 cut(s) 923, 1107, 1642
BseCI ATCGAT 2 cut(s) 2436, 2495
BseJI GATNNNNATC 1 cut(s) 333
BseMII CTCAG 9 cut(s) 113, 165, 347, 758, 1525, 2090, 2475, 2753, 2988
BseNI ACTGG 5 cut(s) 377, 1059, 1537, 2318, 3030
BseRI GAGGAG 3 cut(s) 411, 1568, 3134
BseSI GKGCMC 2 cut(s) 922, 1678
BseX3I CGGCCG 1 cut(s) 1833
BseYI CCCAGC 1 cut(s) 1566
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 3 cut(s) 75, 810, 827
Bsh1285I CGRYCG 1 cut(s) 1836
BshNI GGYRCC 2 cut(s) 195, 1533
BshTI ACCGGT 1 cut(s) 1592
BshVI ATCGAT 2 cut(s) 2436, 2495
BsiEI CGRYCG 1 cut(s) 1836
BsiHKAI GWGCWC 7 cut(s) 64, 729, 1600, 1678, 1978, 2020, 3101
BsiHKCI CYCGRG 3 cut(s) 1185, 2234, 3060
BsiSI CCGG 6 cut(s) 98, 1415, 1593, 2246, 2536, 3112
BslFI GGGAC 2 cut(s) 972, 1645
BsmAI GTCTC 7 cut(s) 354, 505, 2186, 2306, 2321, 2595, 2951
BsmBI CGTCTC 1 cut(s) 2595
BsmFI GGGAC 2 cut(s) 972, 1645
BsmI GAATGC 3 cut(s) 478, 735, 1924
Bso31I GGTCTC 1 cut(s) 2306
BsoBI CYCGRG 3 cut(s) 1185, 2234, 3060
Bsp119I TTCGAA 2 cut(s) 908, 1115
Bsp120I GGGCCC 1 cut(s) 918
Bsp1286I GDGCHC 9 cut(s) 64, 729, 922, 1186, 1600, 1678, 1978, 2020, 3101
Bsp13I TCCGGA 1 cut(s) 2535
Bsp1720I GCTNAGC 2 cut(s) 947, 2739
Bsp19I CCATGG 2 cut(s) 583, 1069
BspCNI CTCAG 9 cut(s) 114, 166, 348, 757, 1524, 2089, 2476, 2752, 2989
BspDI ATCGAT 2 cut(s) 2436, 2495
BspEI TCCGGA 1 cut(s) 2535
BspFNI CGCG 3 cut(s) 75, 810, 827
BspMAI CTGCAG 2 cut(s) 698, 2355
BspMI ACCTGC 6 cut(s) 13, 942, 1561, 1680, 1867, 2358
BspPI GGATC 4 cut(s) 105, 231, 1088, 2563
BspQI GCTCTTC 2 cut(s) 1408, 3027
BspT104I TTCGAA 2 cut(s) 908, 1115
BspT107I GGYRCC 2 cut(s) 195, 1533
BspTI CTTAAG 1 cut(s) 3167
BspTNI GGTCTC 1 cut(s) 2306
BsrFI RCCGGY 2 cut(s) 1414, 1592
BsrI ACTGG 5 cut(s) 377, 1059, 1537, 2318, 3030
BssAI RCCGGY 2 cut(s) 1414, 1592
BssNI GRCGYC 2 cut(s) 69, 1534
BssT1I CCWWGG 7 cut(s) 583, 1069, 1560, 1684, 2138, 2366, 2572
Bst2UI CCWGG 3 cut(s) 923, 1107, 1642
Bst4CI ACNGT 4 cut(s) 683, 718, 1310, 1358
Bst6I CTCTTC 6 cut(s) 324, 1408, 1786, 1809, 2919, 3027
BstACI GRCGYC 2 cut(s) 69, 1534
BstAFI CTTAAG 1 cut(s) 3167
BstAPI GCANNNNNTGC 1 cut(s) 1232
BstBI TTCGAA 2 cut(s) 908, 1115
BstC8I GCNNGC 3 cut(s) 73, 1471, 1600
BstDSI CCRYGG 4 cut(s) 73, 583, 808, 1069
BstENI CCTNNNNNAGG 1 cut(s) 2873
BstFNI CGCG 3 cut(s) 75, 810, 827
BstH2I RGCGCY 1 cut(s) 1537
BstHHI GCGC 5 cut(s) 735, 1401, 1536, 2796, 2946
BstMAI GTCTC 7 cut(s) 354, 505, 2186, 2306, 2321, 2595, 2951
BstMCI CGRYCG 1 cut(s) 1836
BstMWI GCNNNNNNNGC 9 cut(s) 68, 926, 935, 1232, 1479, 1542, 2362, 3121, 3130
BstNI CCWGG 3 cut(s) 923, 1107, 1642
BstNSI RCATGY 1 cut(s) 1638
BstSCI CCNGG 3 cut(s) 921, 1105, 1640
BstSFI CTRYAG 3 cut(s) 694, 714, 2351
BstSLI GKGCMC 2 cut(s) 922, 1678
BstUI CGCG 3 cut(s) 75, 810, 827
BstV2I GAAGAC 1 cut(s) 2233
BstX2I RGATCY 2 cut(s) 110, 2568
BstXI CCANNNNNNTGG 2 cut(s) 590, 1076
BstYI RGATCY 2 cut(s) 110, 2568
BstZI CGGCCG 1 cut(s) 1833
Bsu15I ATCGAT 2 cut(s) 2436, 2495
Bsu36I CCTNAGG 1 cut(s) 2076
BsuTUI ATCGAT 2 cut(s) 2436, 2495
BtgI CCRYGG 4 cut(s) 73, 583, 808, 1069
BtrI CACGTC 2 cut(s) 1277, 1430
BtsI GCAGTG 3 cut(s) 575, 691, 703
BveI ACCTGC 6 cut(s) 13, 942, 1561, 1680, 1867, 2358
Cac8I GCNNGC 3 cut(s) 73, 1471, 1600
CfoI GCGC 5 cut(s) 735, 1401, 1536, 2796, 2946
Cfr10I RCCGGY 2 cut(s) 1414, 1592
Cfr13I GGNCC 6 cut(s) 95, 560, 918, 919, 1103, 1564
Cfr42I CCGCGG 2 cut(s) 76, 811
ClaI ATCGAT 2 cut(s) 2436, 2495
CseI GACGC 2 cut(s) 77, 3002
CspAI ACCGGT 1 cut(s) 1592
CspCI CAANNNNNGTGG 2 cut(s) 2220, 2255
DinI GGCGCC 1 cut(s) 1535
DraI TTTAAA 2 cut(s) 2892, 3106
DrdI GACNNNNNNGTC 1 cut(s) 1876
DriI GACNNNNNGTC 1 cut(s) 1725
DseDI GACNNNNNNGTC 1 cut(s) 1876
EaeI YGGCCR 2 cut(s) 40, 1833
EagI CGGCCG 1 cut(s) 1833
Eam1104I CTCTTC 6 cut(s) 324, 1408, 1786, 1809, 2919, 3027
Eam1105I GACNNNNNGTC 1 cut(s) 1725
EarI CTCTTC 6 cut(s) 324, 1408, 1786, 1809, 2919, 3027
Ecl136II GAGCTC 4 cut(s) 62, 727, 1976, 3099
EclXI CGGCCG 1 cut(s) 1833
Eco130I CCWWGG 7 cut(s) 583, 1069, 1560, 1684, 2138, 2366, 2572
Eco147I AGGCCT 1 cut(s) 542
Eco24I GRGCYC 6 cut(s) 64, 729, 922, 1186, 1978, 3101
Eco31I GGTCTC 1 cut(s) 2306
Eco47I GGWCC 1 cut(s) 95
Eco52I CGGCCG 1 cut(s) 1833
Eco53kI GAGCTC 4 cut(s) 62, 727, 1976, 3099
Eco57I CTGAAG 3 cut(s) 305, 1032, 2415
Eco81I CCTNAGG 1 cut(s) 2076
Eco88I CYCGRG 3 cut(s) 1185, 2234, 3060
EcoICRI GAGCTC 4 cut(s) 62, 727, 1976, 3099
EcoNI CCTNNNNNAGG 1 cut(s) 2873
EcoO109I RGGNCCY 3 cut(s) 918, 919, 1103
EcoRII CCWGG 3 cut(s) 921, 1105, 1640
EcoT14I CCWWGG 7 cut(s) 583, 1069, 1560, 1684, 2138, 2366, 2572
EcoT38I GRGCYC 6 cut(s) 64, 729, 922, 1186, 1978, 3101
EgeI GGCGCC 1 cut(s) 1535
EheI GGCGCC 1 cut(s) 1535
ErhI CCWWGG 7 cut(s) 583, 1069, 1560, 1684, 2138, 2366, 2572
Esp3I CGTCTC 1 cut(s) 2595
FaqI GGGAC 2 cut(s) 972, 1645
FauI CCCGC 2 cut(s) 80, 1228
FauNDI CATATG 1 cut(s) 658
FbaI TGATCA 4 cut(s) 208, 1372, 1486, 1758
FblI GTMKAC 1 cut(s) 1729
FriOI GRGCYC 6 cut(s) 64, 729, 922, 1186, 1978, 3101
FspI TGCGCA 2 cut(s) 734, 2945
GlaI GCGC 5 cut(s) 734, 1400, 1535, 2795, 2945
GsaI CCCAGC 1 cut(s) 1570
GsuI CTGGAG 2 cut(s) 2345, 3146
HaeII RGCGCY 1 cut(s) 1537
HapII CCGG 6 cut(s) 98, 1415, 1593, 2246, 2536, 3112
HgaI GACGC 2 cut(s) 77, 3002
HhaI GCGC 5 cut(s) 735, 1401, 1536, 2796, 2946
Hin1I GRCGYC 2 cut(s) 69, 1534
Hin6I GCGC 5 cut(s) 733, 1399, 1534, 2794, 2944
HinP1I GCGC 5 cut(s) 733, 1399, 1534, 2794, 2944
HincII GTYRAC 4 cut(s) 289, 679, 1730, 3161
HindII GTYRAC 4 cut(s) 289, 679, 1730, 3161
HpaII CCGG 6 cut(s) 98, 1415, 1593, 2246, 2536, 3112
HphI GGTGA 8 cut(s) 181, 317, 848, 1429, 1895, 2132, 2528, 2963
Hpy166II GTNNAC 9 cut(s) 289, 432, 638, 679, 1676, 1708, 1730, 2703, 3161
Hpy8I GTNNAC 9 cut(s) 289, 432, 638, 679, 1676, 1708, 1730, 2703, 3161
Hpy99I CGWCG 1 cut(s) 1731
HpyAV CCTTC 9 cut(s) 296, 532, 904, 1056, 1094, 1524, 1860, 2459, 2513
HpyCH4III ACNGT 4 cut(s) 683, 718, 1310, 1358
HpyCH4IV ACGT 5 cut(s) 1276, 1429, 1615, 1726, 2279
HpyF10VI GCNNNNNNNGC 9 cut(s) 68, 926, 935, 1232, 1479, 1542, 2362, 3121, 3130
HpySE526I ACGT 5 cut(s) 1276, 1429, 1615, 1726, 2279
Hsp92I GRCGYC 2 cut(s) 69, 1534
HspAI GCGC 5 cut(s) 733, 1399, 1534, 2794, 2944
KasI GGCGCC 1 cut(s) 1533
Kpn2I TCCGGA 1 cut(s) 2535
KpnI GGTACC 1 cut(s) 199
Ksp22I TGATCA 4 cut(s) 208, 1372, 1486, 1758
KspI CCGCGG 2 cut(s) 76, 811
LguI GCTCTTC 2 cut(s) 1408, 3027
LmnI GCTCC 4 cut(s) 1981, 2242, 2420, 3121
LweI GCATC 7 cut(s) 22, 342, 661, 1035, 1907, 1965, 2805
MaeII ACGT 5 cut(s) 1276, 1429, 1615, 1726, 2279
MaeIII GTNAC 5 cut(s) 160, 169, 1196, 2120, 2164
MflI RGATCY 2 cut(s) 110, 2568
MhlI GDGCHC 9 cut(s) 64, 729, 922, 1186, 1600, 1678, 1978, 2020, 3101
MlsI TGGCCA 1 cut(s) 42
MluNI TGGCCA 1 cut(s) 42
Mly113I GGCGCC 1 cut(s) 1534
MlyI GAGTC 4 cut(s) 507, 1503, 1999, 2402
MmeI TCCRAC 4 cut(s) 475, 2220, 2466, 2631
Mox20I TGGCCA 1 cut(s) 42
MroI TCCGGA 1 cut(s) 2535
MscI TGGCCA 1 cut(s) 42
MseI TTAA 8 cut(s) 899, 2472, 2807, 2871, 2891, 3084, 3105, 3168
MslI CAYNNNNRTG 5 cut(s) 167, 588, 657, 696, 2460
Msp20I TGGCCA 1 cut(s) 42
MspA1I CMGCKG 2 cut(s) 75, 810
MspCI CTTAAG 1 cut(s) 3167
MspI CCGG 6 cut(s) 98, 1415, 1593, 2246, 2536, 3112
MspR9I CCNGG 3 cut(s) 923, 1107, 1642
Mva1269I GAATGC 3 cut(s) 478, 735, 1924
MvaI CCWGG 3 cut(s) 923, 1107, 1642
MvnI CGCG 3 cut(s) 75, 810, 827
MwoI GCNNNNNNNGC 9 cut(s) 68, 926, 935, 1232, 1479, 1542, 2362, 3121, 3130
NarI GGCGCC 1 cut(s) 1534
NcoI CCATGG 2 cut(s) 583, 1069
NdeI CATATG 1 cut(s) 658
NmeAIII GCCGAG 2 cut(s) 2581, 2652
NmuCI GTSAC 4 cut(s) 160, 169, 1196, 2120
NsbI TGCGCA 2 cut(s) 734, 2945
NspI RCATGY 1 cut(s) 1638
NspV TTCGAA 2 cut(s) 908, 1115
OliI CACNNNNGTG 2 cut(s) 167, 696
PaeR7I CTCGAG 1 cut(s) 3060
PceI AGGCCT 1 cut(s) 542
PciI ACATGT 1 cut(s) 1634
PciSI GCTCTTC 2 cut(s) 1408, 3027
PcsI WCGNNNNNNNCGW 1 cut(s) 1945
PctI GAATGC 3 cut(s) 478, 735, 1924
PfeI GAWTC 8 cut(s) 308, 437, 876, 1849, 2171, 2378, 2438, 2497
PflFI GACNNNGTC 1 cut(s) 158
PinAI ACCGGT 1 cut(s) 1592
PleI GAGTC 4 cut(s) 506, 1503, 1999, 2402
PluTI GGCGCC 1 cut(s) 1537
PpsI GAGTC 4 cut(s) 506, 1503, 1999, 2402
PscI ACATGT 1 cut(s) 1634
Psp124BI GAGCTC 4 cut(s) 64, 729, 1978, 3101
Psp6I CCWGG 3 cut(s) 921, 1105, 1640
PspFI CCCAGC 1 cut(s) 1566
PspGI CCWGG 3 cut(s) 921, 1105, 1640
PspOMI GGGCCC 1 cut(s) 918
PspPI GGNCC 6 cut(s) 95, 560, 918, 919, 1103, 1564
PstI CTGCAG 2 cut(s) 698, 2355
PsuI RGATCY 2 cut(s) 110, 2568
PsyI GACNNNGTC 1 cut(s) 158
RseI CAYNNNNRTG 5 cut(s) 167, 588, 657, 696, 2460
SacI GAGCTC 4 cut(s) 64, 729, 1978, 3101
SacII CCGCGG 2 cut(s) 76, 811
SalI GTCGAC 1 cut(s) 1728
SapI GCTCTTC 2 cut(s) 1408, 3027
SaqAI TTAA 8 cut(s) 899, 2472, 2807, 2871, 2891, 3084, 3105, 3168
Sau96I GGNCC 6 cut(s) 95, 560, 918, 919, 1103, 1564
ScaI AGTACT 1 cut(s) 1053
SchI GAGTC 4 cut(s) 507, 1503, 1999, 2402
ScrFI CCNGG 3 cut(s) 923, 1107, 1642
SduI GDGCHC 9 cut(s) 64, 729, 922, 1186, 1600, 1678, 1978, 2020, 3101
SfaNI GCATC 7 cut(s) 22, 342, 661, 1035, 1907, 1965, 2805
SfcI CTRYAG 3 cut(s) 694, 714, 2351
SfoI GGCGCC 1 cut(s) 1535
Sfr274I CTCGAG 1 cut(s) 3060
Sfr303I CCGCGG 2 cut(s) 76, 811
SfuI TTCGAA 2 cut(s) 908, 1115
SgrBI CCGCGG 2 cut(s) 76, 811
SinI GGWCC 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 3060
SmiMI CAYNNNNRTG 5 cut(s) 167, 588, 657, 696, 2460
SmlI CTYRAG 7 cut(s) 1733, 2009, 2748, 3008, 3053, 3060, 3167
SmoI CTYRAG 7 cut(s) 1733, 2009, 2748, 3008, 3053, 3060, 3167
SpeI ACTAGT 1 cut(s) 2305
SseBI AGGCCT 1 cut(s) 542
SspDI GGCGCC 1 cut(s) 1533
SspI AATATT 1 cut(s) 2157
SstI GAGCTC 4 cut(s) 64, 729, 1978, 3101
StuI AGGCCT 1 cut(s) 542
StyD4I CCNGG 3 cut(s) 921, 1105, 1640
StyI CCWWGG 7 cut(s) 583, 1069, 1560, 1684, 2138, 2366, 2572
TaaI ACNGT 4 cut(s) 683, 718, 1310, 1358
TaiI ACGT 5 cut(s) 1279, 1432, 1618, 1729, 2282
TatI WGTACW 2 cut(s) 50, 1051
TauI GCSGC 2 cut(s) 830, 1838
TfiI GAWTC 8 cut(s) 308, 437, 876, 1849, 2171, 2378, 2438, 2497
Tru1I TTAA 8 cut(s) 899, 2472, 2807, 2871, 2891, 3084, 3105, 3168
Tru9I TTAA 8 cut(s) 899, 2472, 2807, 2871, 2891, 3084, 3105, 3168
TseFI GTSAC 4 cut(s) 160, 169, 1196, 2120
Tsp45I GTSAC 4 cut(s) 160, 169, 1196, 2120
TspGWI ACGGA 2 cut(s) 974, 1206
Tth111I GACNNNGTC 1 cut(s) 158
Vha464I CTTAAG 1 cut(s) 3167
VneI GTGCAC 1 cut(s) 1674
VpaK11BI GGWCC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 2873
XapI RAATTY 7 cut(s) 665, 1111, 2251, 2508, 2628, 2887, 3080
XceI RCATGY 1 cut(s) 1638
XhoI CTCGAG 1 cut(s) 3060
XmaJI CCTAGG 3 cut(s) 1684, 2366, 2572
XmiI GTMKAC 1 cut(s) 1729
ZrmI AGTACT 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.