Rh5BG244600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000253
Physical Location & Seq
Reverse (-)
29617235 .. 29618124
890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG244600.1

Sequence Viewer

Length: 810 bp
ATGGAATGGACAGAATTAATATTAGATCATTTCACGGGGAAGCTGGACCAAGCAGGAATATATGGTGTCGTTGGTGTTTCTCGCTTCCCCTATCATTATTGTGGGAACACATGGAGAGCATTTTGCGAACTTTGGAGTCCTTTGACTAACACCTTACACCATGGGAATGGAGAGATGAGTGTGTCCCTTTATGATTTGAAGCTTATTGGTGGTCTTCCCATTCTGGGTGTCCCATATGAAGAATTCATTCCTGCAAATAAAGAATTACATCGTAATGGGAGATATCCGTATACCATTGTTGAACTTTTGCGAATACATTCTGAATTGAGCGCACCCAATAGCAAGACTTATGTTTCCTGGAGGCAATGGCTTGCTCATTTTTATCGGGGTCGCTTGGTATACGCCGCCTATGGTGAGACTACATATCGGGGAGATCAAATGCAACAAAATATGTTTATGGGTAGAAAACCAGCTCTGGATATTTCAAAAGAAGGAGAACTTGCTGCTTTTCTAGCATTTTGGCTCAGCCGGTTTGTTTTGCCTTCTAATGATTCTAGAATCAGACCTGAAACCTTTTATATGGCAGGCTTAATGGCCCAGGGGGTCAAGGTTTCTCTTGCACCATCAGTTTTAGGCTATATTTATCATGGCCTTGGTGAGTTTGTGACTGATCCGAGAGGGCCTAAAGAGTCTCGAGGCTGCCTTCCTGTTCATTACGTGATCGGTTGGTTAGGAGAGCACTTTACTTGTTTGTATAGATGCCGAGGTGCAAGTGACATACCCGCACGTCACCCTCATTTGGCCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

269

Amino Acids

30.69

Weight (kDa)

8.52

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 19 - 253 8.4e-22 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 290, 399
AciI CCGC 2 cut(s) 405, 783
AclWI GGATC 1 cut(s) 665
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 224, 799
AgsI TTSAA 3 cut(s) 199, 302, 486
AjiI CACGTC 1 cut(s) 788
AjnI CCWGG 3 cut(s) 356, 597, 803
AluBI AGCT 3 cut(s) 43, 202, 473
AluI AGCT 3 cut(s) 43, 202, 473
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 2 cut(s) 410, 696
AlwI GGATC 1 cut(s) 665
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 4 cut(s) 594, 649, 680, 801
ApeKI GCWGC 2 cut(s) 503, 699
ApoI RAATTY 1 cut(s) 242
AseI ATTAAT 1 cut(s) 17
Asp700I GAANNNNTTC 2 cut(s) 246, 316
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 3 cut(s) 46, 595, 680
AsuHPI GGTGA 3 cut(s) 425, 668, 782
AvaI CYCGRG 1 cut(s) 693
AvaII GGWCC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 2 cut(s) 490, 686
BccI CCATC 1 cut(s) 631
BciT130I CCWGG 3 cut(s) 358, 599, 805
BcoDI GTCTC 2 cut(s) 410, 696
BfaI CTAG 2 cut(s) 512, 555
BisI GCNGC 3 cut(s) 405, 504, 700
BlpI GCTNAGC 1 cut(s) 524
BlsI GCNGC 3 cut(s) 406, 505, 701
Bme1390I CCNGG 3 cut(s) 358, 599, 805
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 693
BmgBI CACGTC 1 cut(s) 788
BmgT120I GGNCC 3 cut(s) 46, 595, 680
BmrFI CCNGG 3 cut(s) 358, 599, 805
BmsI GCATC 1 cut(s) 749
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 379
Bpu1102I GCTNAGC 1 cut(s) 524
BsaAI YACGTR 1 cut(s) 718
BsaJI CCNNGG 5 cut(s) 160, 597, 598, 652, 763
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 799
Bse118I RCCGGY 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 3 cut(s) 358, 599, 805
BseDI CCNNGG 5 cut(s) 160, 597, 598, 652, 763
BseLI CCNNNNNNNGG 2 cut(s) 224, 799
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 538
BseXI GCAGC 2 cut(s) 490, 686
BshFI GGCC 4 cut(s) 596, 651, 682, 803
BsiHKAI GWGCWC 1 cut(s) 741
BsiHKCI CYCGRG 1 cut(s) 693
BsiSI CCGG 1 cut(s) 529
BslFI GGGAC 2 cut(s) 169, 215
BslI CCNNNNNNNGG 2 cut(s) 224, 799
BsmAI GTCTC 2 cut(s) 410, 696
BsmFI GGGAC 2 cut(s) 169, 215
BsnI GGCC 4 cut(s) 596, 651, 682, 803
BsoBI CYCGRG 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 741
Bsp143I GATC 4 cut(s) 25, 433, 670, 720
Bsp1720I GCTNAGC 1 cut(s) 524
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 2 cut(s) 405, 783
BspANI GGCC 4 cut(s) 596, 651, 682, 803
BspCNI CTCAG 1 cut(s) 537
BspPI GGATC 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 371
BsrFI RCCGGY 1 cut(s) 528
BssAI RCCGGY 1 cut(s) 528
BssECI CCNNGG 5 cut(s) 160, 597, 598, 652, 763
BssMI GATC 4 cut(s) 25, 433, 670, 720
BssNAI GTATAC 2 cut(s) 291, 400
BssT1I CCWWGG 2 cut(s) 160, 652
Bst1107I GTATAC 2 cut(s) 291, 400
Bst2UI CCWGG 3 cut(s) 358, 599, 805
BstBAI YACGTR 1 cut(s) 718
BstC8I GCNNGC 2 cut(s) 372, 586
BstDEI CTNAG 1 cut(s) 524
BstDSI CCRYGG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 4 cut(s) 28, 436, 673, 723
BstMAI GTCTC 2 cut(s) 410, 696
BstMBI GATC 4 cut(s) 25, 433, 670, 720
BstMWI GCNNNNNNNGC 1 cut(s) 512
BstNI CCWGG 3 cut(s) 358, 599, 805
BstSCI CCNGG 3 cut(s) 356, 597, 803
BstV1I GCAGC 2 cut(s) 490, 686
BstV2I GAAGAC 1 cut(s) 206
BstXI CCANNNNNNTGG 1 cut(s) 167
BstZ17I GTATAC 2 cut(s) 291, 400
BsuRI GGCC 4 cut(s) 596, 651, 682, 803
BtgI CCRYGG 1 cut(s) 160
BtrI CACGTC 1 cut(s) 788
Cac8I GCNNGC 2 cut(s) 372, 586
CfoI GCGC 1 cut(s) 332
Cfr10I RCCGGY 1 cut(s) 528
Cfr13I GGNCC 3 cut(s) 46, 595, 680
CviAII CATG 3 cut(s) 111, 161, 647
DdeI CTNAG 1 cut(s) 524
DpnI GATC 4 cut(s) 27, 435, 672, 722
DpnII GATC 4 cut(s) 25, 433, 670, 720
EaeI YGGCCR 1 cut(s) 801
Eco130I CCWWGG 2 cut(s) 160, 652
Eco32I GATATC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 693
EcoO109I RGGNCCY 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 3 cut(s) 356, 597, 803
EcoRV GATATC 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 160, 652
ErhI CCWWGG 2 cut(s) 160, 652
FaeI CATG 3 cut(s) 114, 164, 650
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FaqI GGGAC 2 cut(s) 169, 215
FatI CATG 3 cut(s) 110, 160, 646
FauI CCCGC 1 cut(s) 790
FauNDI CATATG 1 cut(s) 235
FblI GTMKAC 2 cut(s) 290, 399
Fnu4HI GCNGC 3 cut(s) 405, 504, 700
Fsp4HI GCNGC 3 cut(s) 405, 504, 700
FspBI CTAG 2 cut(s) 512, 555
GlaI GCGC 1 cut(s) 331
GluI GCNGC 3 cut(s) 405, 504, 700
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 4 cut(s) 596, 651, 682, 803
HapII CCGG 1 cut(s) 529
HhaI GCGC 1 cut(s) 332
Hin1II CATG 3 cut(s) 114, 164, 650
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 4 cut(s) 136, 551, 558, 689
HpaII CCGG 1 cut(s) 529
HphI GGTGA 3 cut(s) 425, 668, 782
Hpy166II GTNNAC 2 cut(s) 291, 400
Hpy188I TCNGA 3 cut(s) 322, 563, 675
Hpy188III TCNNGA 3 cut(s) 476, 555, 693
Hpy8I GTNNAC 2 cut(s) 291, 400
HpyAV CCTTC 3 cut(s) 485, 552, 713
HpyCH4IV ACGT 2 cut(s) 717, 787
HpyCH4V TGCA 4 cut(s) 254, 442, 620, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 512
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 2 cut(s) 717, 787
Hsp92II CATG 3 cut(s) 114, 164, 650
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 4 cut(s) 25, 433, 670, 720
Lsp1109I GCAGC 2 cut(s) 490, 686
LweI GCATC 1 cut(s) 749
MaeI CTAG 2 cut(s) 512, 555
MaeII ACGT 2 cut(s) 717, 787
MaeIII GTNAC 3 cut(s) 664, 773, 788
MalI GATC 4 cut(s) 27, 435, 672, 722
MboI GATC 4 cut(s) 25, 433, 670, 720
MboII GAAGA 2 cut(s) 206, 251
MhlI GDGCHC 1 cut(s) 741
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 4 cut(s) 14, 242, 263, 323
MluNI TGGCCA 1 cut(s) 803
MlyI GAGTC 2 cut(s) 145, 698
MnlI CCTC 5 cut(s) 354, 671, 689, 758, 804
Mox20I TGGCCA 1 cut(s) 803
MroXI GAANNNNTTC 2 cut(s) 246, 316
MscI TGGCCA 1 cut(s) 803
MseI TTAA 2 cut(s) 17, 590
MslI CAYNNNNRTG 3 cut(s) 99, 165, 273
Msp20I TGGCCA 1 cut(s) 803
MspI CCGG 1 cut(s) 529
MspR9I CCNGG 3 cut(s) 358, 599, 805
MvaI CCWGG 3 cut(s) 358, 599, 805
MwoI GCNNNNNNNGC 1 cut(s) 512
NcoI CCATGG 1 cut(s) 160
NdeI CATATG 1 cut(s) 235
NdeII GATC 4 cut(s) 25, 433, 670, 720
NlaIII CATG 3 cut(s) 114, 164, 650
NmeAIII GCCGAG 1 cut(s) 788
NmuCI GTSAC 3 cut(s) 664, 773, 788
PaeR7I CTCGAG 1 cut(s) 693
PasI CCCWGGG 1 cut(s) 598
PdmI GAANNNNTTC 2 cut(s) 246, 316
PfeI GAWTC 2 cut(s) 551, 558
PfoI TCCNGGA 1 cut(s) 356
PkrI GCNGC 3 cut(s) 406, 505, 701
PleI GAGTC 2 cut(s) 144, 697
PpsI GAGTC 2 cut(s) 144, 697
Ppu21I YACGTR 1 cut(s) 718
PshBI ATTAAT 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 356, 597, 803
PspGI CCWGG 3 cut(s) 356, 597, 803
PspPI GGNCC 3 cut(s) 46, 595, 680
RseI CAYNNNNRTG 3 cut(s) 99, 165, 273
SaqAI TTAA 2 cut(s) 17, 590
SatI GCNGC 3 cut(s) 405, 504, 700
Sau3AI GATC 4 cut(s) 25, 433, 670, 720
Sau96I GGNCC 3 cut(s) 46, 595, 680
SchI GAGTC 2 cut(s) 145, 698
ScrFI CCNGG 3 cut(s) 358, 599, 805
SduI GDGCHC 1 cut(s) 741
SfaNI GCATC 1 cut(s) 749
Sfr274I CTCGAG 1 cut(s) 693
SinI GGWCC 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 693
SmiMI CAYNNNNRTG 3 cut(s) 99, 165, 273
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
Sse9I AATT 4 cut(s) 14, 242, 263, 323
SsiI CCGC 2 cut(s) 405, 783
SspI AATATT 1 cut(s) 21
SspMI CTAG 2 cut(s) 512, 555
StyD4I CCNGG 3 cut(s) 356, 597, 803
StyI CCWWGG 2 cut(s) 160, 652
TaiI ACGT 2 cut(s) 720, 790
TaqI TCGA 1 cut(s) 694
TasI AATT 4 cut(s) 14, 242, 263, 323
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 2 cut(s) 551, 558
Tru1I TTAA 2 cut(s) 17, 590
Tru9I TTAA 2 cut(s) 17, 590
TseFI GTSAC 3 cut(s) 664, 773, 788
TseI GCWGC 2 cut(s) 503, 699
Tsp45I GTSAC 3 cut(s) 664, 773, 788
TspDTI ATGAA 3 cut(s) 235, 252, 701
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 46
VspI ATTAAT 1 cut(s) 17
XapI RAATTY 1 cut(s) 242
XbaI TCTAGA 1 cut(s) 554
XhoI CTCGAG 1 cut(s) 693
XmiI GTMKAC 2 cut(s) 290, 399
XmnI GAANNNNTTC 2 cut(s) 246, 316
XspI CTAG 2 cut(s) 512, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.