Rh1AG073300

Alcohol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000253
Physical Location & Seq
Reverse (-)
12202092 .. 12202577
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG073300.1

Sequence Viewer

Length: 486 bp
ATGGCTACTCACCCTGTCGGTCCCGGCTCTTCCAACTCTTGTTTGCCTATCCACTACGTCATTGGTTACCTTGGAGAATATTTTCCTTATCTGTACTCATCACTCTCTGATAAAGAGTTCCTAGCAGCGTACCCTCGTTTGGCCAAGTATGCAGGTGTTCAAGGCAGGAGTCTAAGCATTACAGAGGCTCGTATGGTTTTCAGGACCAATAAATTTGTCGTGCATCGCCATATCTCTGTACCTAGTGAAAAAGACCGTTTTTTGCTTGATGACGACGAATTGCCTGATGTGTTATTTGAGGTCCTCGTCTGTATGCGTTCTGCAGTGCTGCCTGTGCGAGTTGGCGAGAGTCTTTTCCTTGAGCCCTATTATCTGAATAGGTTTGTTCGTCAGTTTGGTCTTGATCAGAATGTTCCCTCCAACAAACTATCCTTTAGTGTTTCCAAAAGGCAGCAATGTGGTGTTGATGATCTGTTGAGGGCATAG

Protein Analysis

161

Amino Acids

18.28

Weight (kDa)

7.73

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 3 cut(s) 95, 131, 240
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 161
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 125, 328, 451
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 3 cut(s) 20, 204, 301
AsuC2I CCSGG 1 cut(s) 24
AvaII GGWCC 3 cut(s) 20, 204, 301
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 137, 315, 463
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 1 cut(s) 24
BfaI CTAG 2 cut(s) 122, 243
BfmI CTRYAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 3 cut(s) 126, 329, 452
BlsI GCNGC 3 cut(s) 127, 330, 453
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 3 cut(s) 20, 204, 301
BmgT120I GGNCC 3 cut(s) 20, 204, 301
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 461
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 461
BseXI GCAGC 3 cut(s) 137, 315, 463
BshFI GGCC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 6
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 403, 469
BspANI GGCC 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 143
BspQI GCTCTTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 2 cut(s) 403, 469
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 173
BstEII GGTNACC 1 cut(s) 65
BstKTI GATC 2 cut(s) 406, 472
BstMBI GATC 2 cut(s) 403, 469
BstMWI GCNNNNNNNGC 2 cut(s) 149, 334
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 3 cut(s) 137, 315, 463
BsuRI GGCC 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 143
Cfr13I GGNCC 3 cut(s) 20, 204, 301
Csp6I GTAC 3 cut(s) 94, 130, 239
CviJI RGCY 5 cut(s) 5, 27, 143, 188, 364
CviKI_1 RGCY 5 cut(s) 5, 27, 143, 188, 364
CviQI GTAC 3 cut(s) 94, 130, 239
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 405, 471
DpnII GATC 2 cut(s) 403, 469
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 20, 204, 301
Eco91I GGTNACC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 301
EcoO65I GGTNACC 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 70
FaiI YATR 5 cut(s) 150, 194, 231, 314, 484
FaqI GGGAC 1 cut(s) 6
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 3 cut(s) 126, 329, 452
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 126, 329, 452
FspBI CTAG 2 cut(s) 122, 243
GluI GCNGC 3 cut(s) 126, 329, 452
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 24
HinfI GANTC 2 cut(s) 169, 349
HpaII CCGG 1 cut(s) 24
Hpy188I TCNGA 3 cut(s) 109, 375, 408
Hpy188III TCNNGA 2 cut(s) 202, 401
Hpy99I CGWCG 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 152, 223, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 334
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 2 cut(s) 403, 469
LguI GCTCTTC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 27, 37, 138, 151, 187, 297, 345
Lsp1109I GCAGC 3 cut(s) 137, 315, 463
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 122, 243
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 65
MalI GATC 2 cut(s) 405, 471
MboI GATC 2 cut(s) 403, 469
MboII GAAGA 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 366
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 2 cut(s) 212, 278
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 2 cut(s) 178, 358
MmeI TCCRAC 2 cut(s) 57, 444
MnlI CCTC 6 cut(s) 144, 178, 292, 314, 427, 471
Mox20I TGGCCA 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 81
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 149, 334
NciI CCSGG 1 cut(s) 24
NdeII GATC 2 cut(s) 403, 469
NlaIV GGNNCC 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 81
PkrI GCNGC 3 cut(s) 127, 330, 453
PleI GAGTC 2 cut(s) 177, 357
PpsI GAGTC 2 cut(s) 177, 357
PpuMI RGGWCCY 1 cut(s) 301
Psp5II RGGWCCY 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 3 cut(s) 20, 204, 301
PspPPI RGGWCCY 1 cut(s) 301
PstI CTGCAG 1 cut(s) 325
RsaI GTAC 3 cut(s) 95, 131, 240
RsaNI GTAC 3 cut(s) 94, 130, 239
SapI GCTCTTC 1 cut(s) 34
SatI GCNGC 3 cut(s) 126, 329, 452
Sau3AI GATC 2 cut(s) 403, 469
Sau96I GGNCC 3 cut(s) 20, 204, 301
SchI GAGTC 2 cut(s) 178, 358
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 1 cut(s) 366
SetI ASST 6 cut(s) 60, 72, 157, 244, 303, 383
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 3 cut(s) 20, 204, 301
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 2 cut(s) 212, 278
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 122, 243
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 60
TaqII GACCGA 1 cut(s) 8
TasI AATT 2 cut(s) 212, 278
TatI WGTACW 1 cut(s) 93
TscAI CASTG 1 cut(s) 330
TseI GCWGC 3 cut(s) 125, 328, 451
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 3 cut(s) 20, 204, 301
XapI RAATTY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 2 cut(s) 122, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.