Rmu_sc0007102.1_g000011

Conserved gene of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007102.1
OG0000253
Physical Location & Seq
Reverse (-)
41936 .. 43133
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007102.1_g000011.1.cds

Sequence Viewer

Length: 1056 bp
atggatgctcaaggatttatttgctccgagcgagccccaaagaagcaagggaaagatcttgactacggttctgaataccgaagatcgttacctttgaactcgatcagtctcacagtgtcccttgagagtaggcttacctgggttaccactgccaacttgaattttggtcaccttagatttgatccttatgccgaagacggtgttataaagaatgttcgctatttcggtgctcattttgatgctcacacattgatgaaggtgaacaatgaagaggatggtgacaacaagttcccagttggagaagatttttacccagcccttcatagaatgctgaagtgtaagaaagactggggtgaagacttttgttttcgtggtcgggccgtaattgagcatggcattttagaatggacggaaactaccttaactgactttgaagactcattagacaaagccggtatctttggtgcagttgctgtttctcgttatccatatgagtattgcaataatgtgtggagggcattttgtgagctgtgggggcctttgacaaacacttttcatcatgcagatggggaaatgagcatctctttgcatgatttgaatgttattggaggattgccggtttcgggagaaccatacgaagaattcgttcctccaaacaaagatctggtgaaggctgaattatatcctcctatggttgcaaagcttttgaggatttacacctatctgtatgctgcttataagagcagatatgtctactggccatggtggatcgaacatttttatcgtggggagataatttacagagcctatggtgaatgtaagaattctggggttccgaaactgagagaaccaaagcttgagttgaagatttcaaagcaaggaagactggctgcattccttgcgttctggcttagcaggaatgacatgcagacacgccgccagacgggctacaacttcaacgtcggaccacctccagatcgccgccgacgcccaagatggcatcagaagcttctgaagctgggaactgaagcatatcagtcccacatcgaaaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

351

Amino Acids

40.88

Weight (kDa)

7.64

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 206, 738
AccI GTMKAC 1 cut(s) 753
AciI CCGC 2 cut(s) 937, 982
AclWI GGATC 2 cut(s) 176, 776
AcoI YGGCCR 1 cut(s) 758
AcsI RAATTY 3 cut(s) 160, 641, 823
AcuI CTGAAG 3 cut(s) 353, 1034, 1047
AcyI GRCGYC 1 cut(s) 988
AfiI CCNNNNNNNGG 2 cut(s) 623, 943
AgsI TTSAA 7 cut(s) 97, 160, 434, 598, 865, 873, 958
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 5 cut(s) 529, 703, 856, 1009, 1018
AluI AGCT 5 cut(s) 529, 703, 856, 1009, 1018
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 176, 776
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 3 cut(s) 378, 536, 758
ApeKI GCWGC 2 cut(s) 731, 890
ApoI RAATTY 3 cut(s) 160, 641, 823
Asp700I GAANNNNTTC 1 cut(s) 645
AspS9I GGNCC 3 cut(s) 378, 536, 965
AsuHPI GGTGA 6 cut(s) 161, 271, 290, 365, 679, 824
AvaII GGWCC 1 cut(s) 965
BalI TGGCCA 1 cut(s) 760
BanII GRGCYC 1 cut(s) 37
BbsI GAAGAC 4 cut(s) 201, 363, 441, 889
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 2 cut(s) 718, 877
BccI CCATC 3 cut(s) 269, 560, 990
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 945
BglII AGATCT 2 cut(s) 55, 661
BisI GCNGC 4 cut(s) 732, 891, 937, 982
BlpI GCTNAGC 1 cut(s) 911
BlsI GCNGC 4 cut(s) 733, 892, 938, 983
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 965
BmgT120I GGNCC 3 cut(s) 378, 536, 965
BmiI GGNNCC 2 cut(s) 537, 834
BmrFI CCNGG 1 cut(s) 139
BmrI ACTGGG 2 cut(s) 287, 358
BmsI GCATC 3 cut(s) 229, 588, 1009
BmuI ACTGGG 2 cut(s) 287, 358
BpiI GAAGAC 4 cut(s) 201, 363, 441, 889
BpmI CTGGAG 1 cut(s) 957
Bpu1102I GCTNAGC 1 cut(s) 911
BpuEI CTTGAG 2 cut(s) 143, 878
BsaHI GRCGYC 1 cut(s) 988
BsaJI CCNNGG 2 cut(s) 138, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 623, 943
Bse118I RCCGGY 2 cut(s) 452, 616
Bse1I ACTGG 4 cut(s) 293, 353, 761, 891
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 138, 761
BseGI GGATG 2 cut(s) 10, 280
BseLI CCNNNNNNNGG 2 cut(s) 623, 943
BseMII CTCAG 1 cut(s) 833
BseNI ACTGG 4 cut(s) 293, 353, 761, 891
BseXI GCAGC 2 cut(s) 718, 877
BseYI CCCAGC 2 cut(s) 313, 1018
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 3 cut(s) 380, 538, 760
BsiHKAI GWGCWC 1 cut(s) 232
BsiSI CCGG 2 cut(s) 453, 617
BslFI GGGAC 2 cut(s) 103, 1024
BslI CCNNNNNNNGG 2 cut(s) 623, 943
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 103, 1024
BsmI GAATGC 2 cut(s) 333, 893
BsnI GGCC 3 cut(s) 380, 538, 760
Bsp1286I GDGCHC 2 cut(s) 37, 232
Bsp143I GATC 7 cut(s) 55, 83, 102, 181, 661, 768, 976
Bsp1720I GCTNAGC 1 cut(s) 911
Bsp19I CCATGG 1 cut(s) 761
BspACI CCGC 2 cut(s) 937, 982
BspANI GGCC 3 cut(s) 380, 538, 760
BspCNI CTCAG 1 cut(s) 834
BspLI GGNNCC 2 cut(s) 537, 834
BspPI GGATC 2 cut(s) 176, 776
BsrFI RCCGGY 2 cut(s) 452, 616
BsrI ACTGG 4 cut(s) 293, 353, 761, 891
BssAI RCCGGY 2 cut(s) 452, 616
BssECI CCNNGG 2 cut(s) 138, 761
BssMI GATC 7 cut(s) 55, 83, 102, 181, 661, 768, 976
BssNI GRCGYC 1 cut(s) 988
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 3 cut(s) 68, 115, 200
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 988
BstAPI GCANNNNNTGC 1 cut(s) 899
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 173, 842, 911
BstDSI CCRYGG 1 cut(s) 761
BstEII GGTNACC 2 cut(s) 142, 167
BstF5I GGATG 2 cut(s) 10, 280
BstKTI GATC 7 cut(s) 58, 86, 105, 184, 664, 771, 979
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 7 cut(s) 55, 83, 102, 181, 661, 768, 976
BstMWI GCNNNNNNNGC 6 cut(s) 535, 899, 945, 987, 1006, 1015
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 928
BstPI GGTNACC 2 cut(s) 142, 167
BstSCI CCNGG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 718, 877
BstV2I GAAGAC 4 cut(s) 201, 363, 441, 889
BstX2I RGATCY 2 cut(s) 55, 661
BstYI RGATCY 2 cut(s) 55, 661
BsuRI GGCC 3 cut(s) 380, 538, 760
BtgI CCRYGG 1 cut(s) 761
BtsCI GGATG 2 cut(s) 10, 280
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 120, 147
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 473
Cfr10I RCCGGY 2 cut(s) 452, 616
Cfr13I GGNCC 3 cut(s) 378, 536, 965
CseI GACGC 1 cut(s) 996
CviAII CATG 5 cut(s) 392, 560, 590, 762, 925
DdeI CTNAG 3 cut(s) 173, 842, 911
DpnI GATC 7 cut(s) 57, 85, 104, 183, 663, 770, 978
DpnII GATC 7 cut(s) 55, 83, 102, 181, 661, 768, 976
EaeI YGGCCR 1 cut(s) 758
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 761
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 965
Eco57I CTGAAG 3 cut(s) 353, 1034, 1047
Eco91I GGTNACC 2 cut(s) 142, 167
EcoO109I RGGNCCY 1 cut(s) 536
EcoO65I GGTNACC 2 cut(s) 142, 167
EcoRI GAATTC 2 cut(s) 641, 823
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 761
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 5 cut(s) 395, 563, 593, 765, 928
FaqI GGGAC 2 cut(s) 103, 1024
FatI CATG 5 cut(s) 391, 559, 589, 761, 924
FauNDI CATATG 1 cut(s) 490
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 4 cut(s) 732, 891, 937, 982
FokI GGATG 2 cut(s) 17, 287
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 4 cut(s) 732, 891, 937, 982
GluI GCNGC 4 cut(s) 732, 891, 937, 982
GsaI CCCAGC 2 cut(s) 317, 1022
GsuI CTGGAG 1 cut(s) 957
HaeIII GGCC 3 cut(s) 380, 538, 760
HapII CCGG 2 cut(s) 453, 617
HgaI GACGC 1 cut(s) 996
Hin1I GRCGYC 1 cut(s) 988
Hin1II CATG 5 cut(s) 395, 563, 593, 765, 928
HindIII AAGCTT 3 cut(s) 701, 854, 1007
HinfI GANTC 1 cut(s) 437
HpaII CCGG 2 cut(s) 453, 617
HphI GGTGA 6 cut(s) 161, 271, 290, 365, 679, 824
Hpy166II GTNNAC 2 cut(s) 262, 754
Hpy188I TCNGA 6 cut(s) 28, 73, 837, 965, 1005, 1014
Hpy188III TCNNGA 3 cut(s) 59, 624, 974
Hpy8I GTNNAC 2 cut(s) 262, 754
Hpy99I CGWCG 2 cut(s) 965, 990
HpyAV CCTTC 3 cut(s) 250, 329, 664
HpyCH4III ACNGT 3 cut(s) 68, 115, 200
HpyCH4IV ACGT 1 cut(s) 960
HpyCH4V TGCA 7 cut(s) 467, 501, 563, 589, 698, 893, 928
HpyF10VI GCNNNNNNNGC 6 cut(s) 535, 899, 945, 987, 1006, 1015
HpyF3I CTNAG 3 cut(s) 173, 842, 911
HpySE526I ACGT 1 cut(s) 960
Hsp92I GRCGYC 1 cut(s) 988
Hsp92II CATG 5 cut(s) 395, 563, 593, 765, 928
Kzo9I GATC 7 cut(s) 55, 83, 102, 181, 661, 768, 976
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 2 cut(s) 718, 877
LweI GCATC 3 cut(s) 229, 588, 1009
MaeII ACGT 1 cut(s) 960
MaeIII GTNAC 4 cut(s) 87, 142, 167, 278
MalI GATC 7 cut(s) 57, 85, 104, 183, 663, 770, 978
MboI GATC 7 cut(s) 55, 83, 102, 181, 661, 768, 976
MboII GAAGA 9 cut(s) 93, 206, 281, 314, 368, 446, 650, 877, 894
MflI RGATCY 2 cut(s) 55, 661
MhlI GDGCHC 2 cut(s) 37, 232
MlsI TGGCCA 1 cut(s) 760
MluCI AATT 6 cut(s) 160, 384, 641, 677, 795, 823
MluNI TGGCCA 1 cut(s) 760
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 277, 943
MnlI CCTC 7 cut(s) 265, 507, 602, 660, 696, 702, 981
Mox20I TGGCCA 1 cut(s) 760
MroXI GAANNNNTTC 1 cut(s) 645
MscI TGGCCA 1 cut(s) 760
MseI TTAA 1 cut(s) 422
MslI CAYNNNNRTG 3 cut(s) 237, 251, 564
Msp20I TGGCCA 1 cut(s) 760
MspI CCGG 2 cut(s) 453, 617
MspR9I CCNGG 1 cut(s) 139
Mva1269I GAATGC 2 cut(s) 333, 893
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 6 cut(s) 535, 899, 945, 987, 1006, 1015
NcoI CCATGG 1 cut(s) 761
NdeI CATATG 1 cut(s) 490
NdeII GATC 7 cut(s) 55, 83, 102, 181, 661, 768, 976
NlaIII CATG 5 cut(s) 395, 563, 593, 765, 928
NlaIV GGNNCC 2 cut(s) 537, 834
NmuCI GTSAC 2 cut(s) 167, 278
NspI RCATGY 1 cut(s) 928
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PctI GAATGC 2 cut(s) 333, 893
PdmI GAANNNNTTC 1 cut(s) 645
PkrI GCNGC 4 cut(s) 733, 892, 938, 983
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PsiI TTATAA 2 cut(s) 206, 738
Psp6I CCWGG 1 cut(s) 137
PspEI GGTNACC 2 cut(s) 142, 167
PspFI CCCAGC 2 cut(s) 313, 1018
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 537, 834
PspPI GGNCC 3 cut(s) 378, 536, 965
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 2 cut(s) 55, 661
RseI CAYNNNNRTG 3 cut(s) 237, 251, 564
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 4 cut(s) 732, 891, 937, 982
Sau3AI GATC 7 cut(s) 55, 83, 102, 181, 661, 768, 976
Sau96I GGNCC 3 cut(s) 378, 536, 965
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 2 cut(s) 37, 232
SfaNI GCATC 3 cut(s) 229, 588, 1009
SinI GGWCC 1 cut(s) 965
SmiMI CAYNNNNRTG 3 cut(s) 237, 251, 564
SmlI CTYRAG 3 cut(s) 9, 122, 857
SmoI CTYRAG 3 cut(s) 9, 122, 857
Sse9I AATT 6 cut(s) 160, 384, 641, 677, 795, 823
SsiI CCGC 2 cut(s) 937, 982
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 3 cut(s) 68, 115, 200
TaiI ACGT 1 cut(s) 963
TaqI TCGA 3 cut(s) 101, 771, 1047
TasI AATT 6 cut(s) 160, 384, 641, 677, 795, 823
TauI GCSGC 2 cut(s) 939, 984
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 2 cut(s) 120, 154
TseFI GTSAC 2 cut(s) 167, 278
TseI GCWGC 2 cut(s) 731, 890
Tsp45I GTSAC 2 cut(s) 167, 278
TspDTI ATGAA 4 cut(s) 269, 282, 311, 545
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 2 cut(s) 120, 154
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 3 cut(s) 160, 641, 823
XceI RCATGY 1 cut(s) 928
XmiI GTMKAC 1 cut(s) 753
XmnI GAANNNNTTC 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.